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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050091 ID=TCONS_00050091|Name=TCONS_00050091|organism=Clytia hemisphaerica|type=transcript|length=1340bp
GATTCGAAGAAGTAGTTCAGAAGATTATAGAGCAATTTTATACAAGATGG
CTGACAATTCTCATGGATGGAATTGTTTTGGATGTAATGGAAGAGTTACT
GTTGGTCAAAGTCAACGATCTTGGATGTGGTTTCGTATTGagtAATATTC
GACGCCACGACTTGACGATTTTGTCTTTATTATCTCAATTAAAGTAACAT
TCGGCAGACACCACGAAATGAACACAACTACCAATCCACTTACATGTGTT
GGGCTGAATATAAGTGAGGGGAATAAAACTTTTTGCTATACTGAAACTTG
GAAacctttttcaaaggaaatcaCATTGGGTGTTGTGCTTCCACCCTGTA
TTATCGCTTTCTTAATCGTTGCTGGTGGATTCCTGTGTAGTGGTATCCTT
TATAAACTTGAAGACATCCGAGATAAGTATTTGCAACAATATGATAGTAt
aaatgaaagtttttttagaaaacgaagtgaaaaatcaaaatggttcTTTC
TCGTCTTCGTACTCGATACATGGAGCTTCGATTCTAAGAGTCATCGCCCA
TTTTGTGCAGCATCTAAACAACGAGTTAACCAGGTTCTGTTACAAAGAAT
GGAATGGTCGTATCTACCAAACACCTTTTGATCTGAAATGTATGAGCATC
TTGGATTGGCTTCTTTTAGCATTTTCAGCCATCCCAGCACTTTGTTTTGT
CATTGCGTTCTTCATCTTTGTGGTGGTCCGCTGCCAGGAGTGCCGCATTG
AGTCACATGACGCAGACACTGAACCAATACTTGAAAGATCGTCAGAAGCA
CGTGTTTGACTCCATTTTTTGAAGACTAAACACTAAACACAACAATTTTG
AAATGTATGAAGAGACCCCCAGAAGCGCACTGCATCATGTTATCTCGTCA
AGTTTGTTCCCCCAACACAAtcacaaaaattgactaaaTTTATGTTTACC
CTATCACGCACGTCAACAAAATCCTGATCACACTGTCATGCAAATATAAA
TTTAGAGTCACGAAAAAGCTTCAATTTACACCGTCATCTTAACCGCCTGG
AAATCTCCTTGAATACTTGAAGACAGGTTTTCATTGGTTTTTCTTCTTCT
GGAAAGCTCTTATTTCTTCAGCATGGTCGGaaatgaagaaatttcgacCA
AACAAACACTGGAAGTGAAGCGAACATTGATATTGGACAATCATTATCCA
AAGTCTTGGcaatttataatatttatttaaaaagtcTTATACTCATTTAA
AATTTATGCACCACTACAGATATTATCTTATTGAAAATTATTCACAAAAA
GTATGATAACGTCAACTTTTTATAGGGAAGTCGAGGGCCC Run BLAST on NCBI transcript from alignment at scaffold_167:986813..992718- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050091 ID=TCONS_00050091|Name=TCONS_00050091|organism=Clytia hemisphaerica|type=transcript|length=5906bp|location=Sequence derived from alignment at scaffold_167:986813..992718- (Clytia hemisphaerica)
GATTCGAAGAAGTAGTTCAGAAGATTATAGAGCAATTTTATGTAAGTGTT
CTAATTCTGCTTTAATTGTTCGTTTCTTTTATATACTTTGTACTCTTTTC
GAAATCTCGACTGCTACAAAAAACTTTCTACATTTTGACAACAATCTGAG
ATCAAACAAGGCCTATTTTTTCAAATTTTTTTGAAAATTTGGTTTTTACT
TGACCAACCTCAAAGATTTGTTCAGGTCAAAGGGGTTGTCAAAAATTTGG
TGAAAGTTTGAATGTGATATTTTTTTGGTAAAGAATGTTACACATCAAAA
ATTGGATCAAGAAGGTGACAATTTTTGTTAGCTTTAAACCCGGCATCCTA
AGAGGGTTAAACAGGTTTCGTTTGAAATGGAAGTATTTTTCATCTTTCTT
CTTCCAGACAAGATGGCTGACAATTCTCATGGATGGAATTGTTTTGGATG
TAATGGAAGAGTTACTGTTGGTCAAAGTCAACGATCTTGGATGTGGTTTC
GTATTGGTGCGTACCTCTTCTTAATATTAGCGTTATTCGCAATACCAAAA
GAGTTATATGAAAAATGGAATCGCTTGACGCCTGACGAACGCTTGATGTA
TTTTGGTTTTTATGCTGCTGAAATTGGAATCACTGTCCTTTTAGTTTTTC
CTTTCAGACGTTGCTGTCAAAAGATTTTTAAACGCAAGCGAATCATTTTC
TGGTCTAAAAGCAGTACGGTCAGTCTAAAATCAGCACTCGCAAACCTTCA
GAGGTACATACTTACAGAAGAAAAAGCCAAGGAGATTGAAAGAGAAGCAA
CCAGTTCTATTAAAGTTATTAGCCAGCACATTTCAAACAGTTTTCAAGGA
AACCAAATCAAATTTTCGTTGACCGGTGGATTTGCAGAAGGGTATGGAGT
GCCATTATGGTCAAAATGGCTTTTAATTGAAGGAGAAGAAAAACTTGACA
AAAGTCATGCTCTGATTAGTGATTTCGATTTTATGTTTGAACTTGAGAAT
ATTTTTGCTGGATACGATCCGTCGGATGATGTTGATTTTCTCATAACAAC
AAGAGACTGCCAACTAGGATTTACTAAACTAATGGTACATAATCAAGATT
CGGGATCAAGATTTGGCTGTGATGGGGAATACCTTTCAGCTAAGTTTGTT
AAGCAAAAAATCTACACATCCGTTTTGGAAACTGACATGGCGATTTACCC
TGGATTCAAAAATTATTTACCACTTTGTTGCTTGAGATCCTCTAATGAAC
ATTATGTTGAGACAAAAATATCTGGCCCTGCTATTAAATTGAAAATATGC
AATACTGGAGTTTCACATCAGGATGTATTACATACAGGCAAACATAGTTT
TAGTGATATCAGAATGAATTCAAAGTATCAACCAGAAACAAATCATTTAT
TAGCTGATATCACATTTAGCATCTGGTGTAAAGAGTTTCCACGCAGCTCA
AATTTTAACAAGAGAAACGACCGACGATGGCCGAAACCTGAAGACGTAGA
GCGAATCGTAAATATGGGGTGTCATTTGGTTCCCAAATCGCAGGAAGAAA
ACGATACAAAGGAGTTGACTTGGAGATTCTCTTTCTCAAAAGCTGAAGTT
GAACTCTCAAAACTCATCAATTATACTGCTCGAAAATGTTTTCTTGCGTT
GAAAGTGATCAGTAAAGATCACCTCTCATTTACATGCTCTCGACTATCAT
CTTATCATCTTAAAACAATTTTCCTGAACATGGTGGAGGAAACTGGTCTG
GAAGCTTGGACTGAAGAAAACATTGAAACCATGTTCAGATCTTTGTTAGG
AGAAGTGAAAAGTGCAATTGACAGTAAAAGATGTCAACATTTTTGGATTC
CCGAGATCAACTTATTTGAAGACATCCCAGACAGAAAGTTATTTTCCCTT
TCAAAGATTTTTGATAAGGTTCTTGAAAATCCAGCACCGTATATTCAACA
TAAAAAGAAAGTTGATAAGGAGCATGACAACCAGTCAAGAGATGTCTGCG
TTGATTTAGAGGATGTTGAAATGATTGGAAATAATTTGACCGAACCATTG
ATACCTAGATCTGCAAGATGATATCTGTGAGATAGCAAATCAAGCGAAAA
TACAACACTCTCTTGTCTGTCTTCAATGAACGAGAGCGATTTTTGCTGAT
TTTAGCTGACAAATGTTTTCCTAAAATTAGATAAGTAAAGGCACTATTTA
ACTTTCAGATTTATTTTGTAATTTCATAAAATTTTAAACTCTTCAAAATT
TGTCAAATACTATTCAAATTTTATTTTGAGATATTTCCTTGTCTTTTTCG
TTCAGGTATTACAAACTTCAGGCCCGGCGGAAGCGGGAGGCGTATTTTTT
CTCCGTCAGCGTTCGCAACCCAACTTCAGCGGTCGAAACCCAACTTAGTG
GTCGAAGTAGGCTTCTGTTCATTCTCTAGCGAAAAAAGTTTCTTATAACC
CATTTTAGTGGTCGAAGCCCATGTTTTAAATTGAAGGGGATTTTTTAAAG
GTCGAAACCCAACTCAGGTGAGTAAACAAACTTCACAGATGAATGATTCT
TTTGTTTTGACATTTCACGAATGGAAAACAGATACCTCTATTTCCAAGAA
TTGACTTCATGAAAACACAAGAAAAAATCATTTGTTCATCATAAAATTTT
TAAATAAATATCATATGATATTTTTCATCCATACACTACAGTCGTGACTA
TAGTTACAGTATCAACCTTGTTAAAAACCTTAATCAACAAAAATGTGAAT
TCAGATATTTGTATTTTGAGCGAAATTTTTCTATCACATTGAAAAATAAC
ATAAAAAGGATAGAGAATCGTATATCAAGTCAACATTTGTTTCACATAGT
GTGTCTGGTTGTTTAGTTGTTTGGGTACTTTAAGTGACTTTATTATCTTA
AAGTTATATTCGACACCACGATTTTGTCCATCAACTAGAGTCTATTCACG
ATAAGTGTGCACTCTTTTTTCTTTCACCTATAACTTTTGAAGGAATTCTT
CAATCTTTATAAATTTGGTATAATTGGAAAGACATTAGTGAGTGGAACAA
TTTGAAATAAAAAAAAATTCAAAAAAATTCTAAAAATGAAGATGAAAATG
AAGAAGAAAAAAATGAAGATCTTGTAGAAAAATGTTATAACTTTCATTTT
CACTGGAGAGATTCTTTGATCTTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTCATTTTCATCTTCATTTTTATAATCTTTT
TAAAGTTTTTTTTATTTCAAATTGTTCCACTCACTAATATCTTTCCAATG
ATACCAAATTTATAAAGATTCAGGAATTCCTTCAAAAATTATAGGTAAAA
GAAAAAAGAGTGCACACTTATCGTGAATAGACTTTAATTACACGGCGGAG
CTACGGAAGGAGAAGCAGAGAAACTAAAAGATACTTAATCTTTATAACTA
GATATTTATGAGATCATGTTGAAAGAAGAACTAAAAGTAACAGCCTAGCT
CATCGGTAGTGTCCAATTTATTAAATATCCAGCTCAGGGATATATTGATG
TCCTAGAATTGAGGATTGCTAATTTCTACATCAGAACCCATTGATCAAAT
ATTATTATTTTTTTTTTTAGAGTAAAATATTCGACGCCACGACTTGACGA
TTTTCTCTTTATTATATCAATTAAAGTAACATTCGGCAGACACCACGACT
CAACGATTTTGCCGTTCATCGTGCCAATATGAACACAACTAGNCAAATAT
TATTTTATTTTATTTTAGAGTAATATTCGACGCCACGACTTGACGATTTT
GTCTTTATTATCTCAATTAAAGTAACATTCGGCAGACACCACGAAATGAA
CACAACTACCAATCCACTTACATGTGTTGGGCTGAATATAAGTGAGGGGA
ATAAAACTTTTTGCTATACTGAAACTTGGAAACCTTTTTCAAAGGAAATC
ACATTGGGTGTTGTGCTTCCACCCTGTATTATCGCTTTCTTAATCGTTGC
TGGTGGATTCCTGTGTAGTGGTATCCTTTATAAACTTGAAGACATCCGAG
ATAAGTATTTGCAACAATATGATAGTATAAATGAAAGTTTTTTTAGAAAA
CGAAGTGAAAAATCAAAATGGTTCTTTCTCGTCTTCGTACTCGATACATG
GAGGTATGTTTACGCTGTTGTTGATTTGTGTTTTGATTTGGTGATCGTTT
ACAAACTCCAACAAAGTTTATATTTTCATGAAGCGATCTATCAGAATGAT
GCAATCATTTGGTTTTTATATTGTATCGGTTGGTTTGGGTTTTTTTCCAA
AATGCAAGGGTTCAGCTTTATTTTGAAGAAGAAACCGCCACCTCAAAACA
AAGGATTTACAGATTGGAAACTGTTTTTTACACTCTCACAATTTTTCCTT
GATGAAGGTCCTGAATTAATTTTACAATTTTTCTATATCGAAAATTATGA
AGTTCGATATAAAGCTAAATATATCCTACATGATATGATCCTATACAAGG
ACTTTGTATACATCATAGTATGCGTTTCAAAATGCATTTACCATTTCTCA
AAAACACTTACAGTGATGAAGGATCGGACTCAAAGCTTAAGAGATGTCGT
TGATAAGCTCCTTTACATATCCATATGGCTTTTTACCATAGCTTCGATTC
TAAGAGTCATCGCCCATTTTGTGCAGCATCTAAACAACGAGTTAACCAGG
TTCTGTTACAAAGAATGGAATGGTCGTATCTACCAAACACCTTTTGATCT
GAAATGTATGAGCATCTTGGATTGGCTTCTTTTAGCATTTTCAGCCATCC
CAGCACTTTGTTTTGTCATTGCGTTCTTCATCTTTGTGGTGGTCCGCTGC
CAGGAGTGCCGCATTGAGTCACATGACGCAGACACTGAACCAATACTTGA
AAGATCGTCAGAAGCACGTGTTTGACTCCATTTTTTGAAGACTAAACACT
AAACACAACAATTTTGAAATGTATGAAGAGACCCCCAGAAGCGCACTGCA
TCATGTTATCTCGTCAAGTTTGTTCCCCCAACACAATCACAAAAATTGAC
TAAATTTATGTTTACCCTATCACGCACGTCAACAAAATCCTGATCACACT
GTCATGCAAATATAAATTTAGAGTCACGAAAAAGCTTCAATTTACACCGT
CATCTTAACCGCCTGGAAATCTCCTTGAATACTTGAAGACAGGTTTTCAT
TGGTTTTTCTTCTTCTGGAAAGCTCTTATTTCTTCAGCATGGTCGGAAAT
GAAGAAATTTCGACCAAACAAACACTGGAAGTGAAGCGAACATTGATATT
GGACAATCATTATCCAAAGTCTTGGCAATTTATAATATTTATTTAAAAAG
TCTTATACTCATTTAAAATTTATGCACCACTACAGATATTATCTTATTGA
AAATTATTCACAAAAAGTATGATAACGTCAACTTTTTATAGGGAAGTCGA
GGGCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050091-exon-scaffold_167-1575043694:992678..992718 | TCONS_00050091-exon-scaffold_167-1575043694:992678..992718 | Clytia hemisphaerica | exon |
| TCONS_00050091-exon-scaffold_167-1575043694:992213..992311 | TCONS_00050091-exon-scaffold_167-1575043694:992213..992311 | Clytia hemisphaerica | exon |
| TCONS_00050091-exon-scaffold_167-1575043694:988116..988500 | TCONS_00050091-exon-scaffold_167-1575043694:988116..988500 | Clytia hemisphaerica | exon |
| TCONS_00050091-exon-scaffold_167-1575043694:986813..987627 | TCONS_00050091-exon-scaffold_167-1575043694:986813..987627 | Clytia hemisphaerica | exon |
| TCONS_00050091-exon-scaffold_167-1510915933:992678..992718 | TCONS_00050091-exon-scaffold_167-1510915933:992678..992718 | Clytia hemisphaerica | exon |
| TCONS_00050091-exon-scaffold_167-1510915933:992213..992311 | TCONS_00050091-exon-scaffold_167-1510915933:992213..992311 | Clytia hemisphaerica | exon |
| TCONS_00050091-exon-scaffold_167-1510915933:988116..988500 | TCONS_00050091-exon-scaffold_167-1510915933:988116..988500 | Clytia hemisphaerica | exon |
| TCONS_00050091-exon-scaffold_167-1510915933:986813..987627 | TCONS_00050091-exon-scaffold_167-1510915933:986813..987627 | Clytia hemisphaerica | exon |
| TCONS_00050091-exon-scaffold_167-1491911889:992678..992718 | TCONS_00050091-exon-scaffold_167-1491911889:992678..992718 | Clytia hemisphaerica | exon |
| TCONS_00050091-exon-scaffold_167-1491911889:992213..992311 | TCONS_00050091-exon-scaffold_167-1491911889:992213..992311 | Clytia hemisphaerica | exon |
| TCONS_00050091-exon-scaffold_167-1491911889:988116..988500 | TCONS_00050091-exon-scaffold_167-1491911889:988116..988500 | Clytia hemisphaerica | exon |
| TCONS_00050091-exon-scaffold_167-1491911889:986813..987627 | TCONS_00050091-exon-scaffold_167-1491911889:986813..987627 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:986813..992718 - |
Blast
The following BLAST results are available for this feature:
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