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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050092 ID=TCONS_00050092|Name=TCONS_00050092|organism=Clytia hemisphaerica|type=transcript|length=1718bp
AAAATGGGCAAAATCGTTCTGCTAATTAAGagtAATATTCGACGCCACGA
CTTGACGATTTTGTCTTTATTATCTCAATTAAAGTAACATTCGGCAGACA
CCACGAAATGAACACAACTACCAATCCACTTACATGTGTTGGGCTGAATA
TAAGTGAGGGGAATAAAACTTTTTGCTATACTGAAACTTGGAAacctttt
tcaaaggaaatcaCATTGGGTGTTGTGCTTCCACCCTGTATTATCGCTTT
CTTAATCGTTGCTGGTGGATTCCTGTGTAGTGGTATCCTTTATAAACTTG
AAGACATCCGAGATAAGTATTTGCAACAATATGATAGTAtaaatgaaagt
ttttttagaaaacgaagtgaaaaatcaaaatggttcTTTCTCGTCTTCGT
ACTCGATACATGGAGGTATGTTTACGCTGTTGTTGATTTGTGTTTTGATT
TGGTGATCGTTTACAAACTCCAACAAAGTTTATATTTTCATGAAGCGATC
TATCAGAATGATGCAATCATTTGGTTTTTATATTGTATCGGTTGGTTtgg
gtttttttccaaaatgcaaGGGTTcagctttattttgaagaagaaaCCGC
CACCTCAAAACAAAGGATTTACAGATTGGAAACTGTTTTTTACACTCTCA
CAATTTTTCCTTGATGAAGGTCCTGaattaattttacaatttttctatAT
CGAAAATTATGAAGTTCGATATAAAGCTAAATATATCCTACATGATATGA
TCCTATACAAGGACTTTGTATACATCATAGTATGCGTTTCAAAATGCATT
TACCATTTCTCAAAAACACTTACAGTGATGAAGGATCGGACTCAAAGCTT
AAGAGATGTCGTTGATAAGCTCCTTTACATATCCATATGGCTTTTTACCA
TAGCTTCGATTCTAAGAGTCATCGCCCATTTTGTGCAGCATCTAAACAAC
GAGTTAACCAGGTTCTGTTACAAAGAATGGAATGGTCGTATCTACCAAAC
ACCTTTTGATCTGAAATGTATGAGCATCTTGGATTGGCTTCTTTTAGCAT
TTTCAGCCATCCCAGCACTTTGTTTTGTCATTGCGTTCTTCATCTTTGTG
GTGGTCCGCTGCCAGGAGTGCCGCATTGAGTCACATGACGCAGACACTGA
ACCAATACTTGAAAGATCGTCAGAAGCACGTGTTTGACTCCATTTTTTGA
AGACTAAACACTAAACACAACAATTTTGAAATGTATGAAGAGACCCCCAG
AAGCGCACTGCATCATGTTATCTCGTCAAGTTTGTTCCCCCAACACAAtc
acaaaaattgactaaaTTTATGTTTACCCTATCACGCACGTCAACAAAAT
CCTGATCACACTGTCATGCAAATATAAATTTAGAGTCACGAAAAAGCTTC
AATTTACACCGTCATCTTAACCGCCTGGAAATCTCCTTGAATACTTGAAG
ACAGGTTTTCATTGGTTTTTCTTCTTCTGGAAAGCTCTTATTTCTTCAGC
ATGGTCGGaaatgaagaaatttcgacCAAACAAACACTGGAAGTGAAGCG
AACATTGATATTGGACAATCATTATCCAAAGTCTTGGcaatttataatat
ttatttaaaaagtcTTATACTCATTTAAAATTTATGCACCACTACAGATA
TTATCTTATTGAAAATTATTCACAAAAAGTATGATAACGTCAACTTTTTA
TAGGGAAGTCGAGGGCCC Run BLAST on NCBI transcript from alignment at scaffold_167:986813..993526- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050092 ID=TCONS_00050092|Name=TCONS_00050092|organism=Clytia hemisphaerica|type=transcript|length=6714bp|location=Sequence derived from alignment at scaffold_167:986813..993526- (Clytia hemisphaerica)
AAAATGGGCAAAATCGTTCTGCTAATTAAGGCAAGTTTCTTTTTTTGCGC
TTTTCCCCGAAATTTAGGTCGGTGCTTCGAGTACATTTGCTCGAGAAGAG
CTGAATATATATTATCTGGGTCAGAGTACTGGCTAATCAAGCGAATTTTT
TTCAAATTCATCCATCGTCTTCTTCATGCAAATTCTCATACTCAAAGATC
ATGCTTGAACAGTCAAAAAATTTCTAAAAGTTCTTATAAATCTCAAACTA
AAACTGCTTACAGGCTTTGTCTGAACACGCATGCAAATATCAAGACACTT
TTATTTCTCTTAGCTTCGCGTTTCAACGTGACAGGGTGACAGATTCCACT
TAGAAATAATGATTTTTAGATCTTGTCGATAGAGGTTTTTTAGCAAGCGA
AAGATTTGCTATTCAAAGAGAAATCGCTTAGGATCAGATCTAAAACAAAT
TATGATGACAATTGTATTTTTGTGTGTTGTTGTAAAGATTCTTGGAAATA
AAAACTGGTTTATTCCATCAATATTTATTTAGAAAGCAAAATTTTCAGCT
GATTGCGTAGTCTGTGAATCCCTGGTCAAATCACATGATCGAAACGTGAG
CCAAAAAGTATTTTTTGCGAACATAAGTAAAAATTCCAGACCCGTTTTTT
ATACATACTTTCCTGATCTAGCAAGTTTACTTTTGTCTCCTTGAGTAAGA
TCAACAATGCAATGGCAGTGTGGATGAAATTTTGAGTGATGACTTTCATG
TGACAAAAGCTTGTTTATATACGAGAGAAAAATGCTACAGTAGTACATTC
ACAAGAAAGATTCGAAGAAGTAGTTCAGAAGATTATAGAGCAATTTTATG
TAAGTGTTCTAATTCTGCTTTAATTGTTCGTTTCTTTTATATACTTTGTA
CTCTTTTCGAAATCTCGACTGCTACAAAAAACTTTCTACATTTTGACAAC
AATCTGAGATCAAACAAGGCCTATTTTTTCAAATTTTTTTGAAAATTTGG
TTTTTACTTGACCAACCTCAAAGATTTGTTCAGGTCAAAGGGGTTGTCAA
AAATTTGGTGAAAGTTTGAATGTGATATTTTTTTGGTAAAGAATGTTACA
CATCAAAAATTGGATCAAGAAGGTGACAATTTTTGTTAGCTTTAAACCCG
GCATCCTAAGAGGGTTAAACAGGTTTCGTTTGAAATGGAAGTATTTTTCA
TCTTTCTTCTTCCAGACAAGATGGCTGACAATTCTCATGGATGGAATTGT
TTTGGATGTAATGGAAGAGTTACTGTTGGTCAAAGTCAACGATCTTGGAT
GTGGTTTCGTATTGGTGCGTACCTCTTCTTAATATTAGCGTTATTCGCAA
TACCAAAAGAGTTATATGAAAAATGGAATCGCTTGACGCCTGACGAACGC
TTGATGTATTTTGGTTTTTATGCTGCTGAAATTGGAATCACTGTCCTTTT
AGTTTTTCCTTTCAGACGTTGCTGTCAAAAGATTTTTAAACGCAAGCGAA
TCATTTTCTGGTCTAAAAGCAGTACGGTCAGTCTAAAATCAGCACTCGCA
AACCTTCAGAGGTACATACTTACAGAAGAAAAAGCCAAGGAGATTGAAAG
AGAAGCAACCAGTTCTATTAAAGTTATTAGCCAGCACATTTCAAACAGTT
TTCAAGGAAACCAAATCAAATTTTCGTTGACCGGTGGATTTGCAGAAGGG
TATGGAGTGCCATTATGGTCAAAATGGCTTTTAATTGAAGGAGAAGAAAA
ACTTGACAAAAGTCATGCTCTGATTAGTGATTTCGATTTTATGTTTGAAC
TTGAGAATATTTTTGCTGGATACGATCCGTCGGATGATGTTGATTTTCTC
ATAACAACAAGAGACTGCCAACTAGGATTTACTAAACTAATGGTACATAA
TCAAGATTCGGGATCAAGATTTGGCTGTGATGGGGAATACCTTTCAGCTA
AGTTTGTTAAGCAAAAAATCTACACATCCGTTTTGGAAACTGACATGGCG
ATTTACCCTGGATTCAAAAATTATTTACCACTTTGTTGCTTGAGATCCTC
TAATGAACATTATGTTGAGACAAAAATATCTGGCCCTGCTATTAAATTGA
AAATATGCAATACTGGAGTTTCACATCAGGATGTATTACATACAGGCAAA
CATAGTTTTAGTGATATCAGAATGAATTCAAAGTATCAACCAGAAACAAA
TCATTTATTAGCTGATATCACATTTAGCATCTGGTGTAAAGAGTTTCCAC
GCAGCTCAAATTTTAACAAGAGAAACGACCGACGATGGCCGAAACCTGAA
GACGTAGAGCGAATCGTAAATATGGGGTGTCATTTGGTTCCCAAATCGCA
GGAAGAAAACGATACAAAGGAGTTGACTTGGAGATTCTCTTTCTCAAAAG
CTGAAGTTGAACTCTCAAAACTCATCAATTATACTGCTCGAAAATGTTTT
CTTGCGTTGAAAGTGATCAGTAAAGATCACCTCTCATTTACATGCTCTCG
ACTATCATCTTATCATCTTAAAACAATTTTCCTGAACATGGTGGAGGAAA
CTGGTCTGGAAGCTTGGACTGAAGAAAACATTGAAACCATGTTCAGATCT
TTGTTAGGAGAAGTGAAAAGTGCAATTGACAGTAAAAGATGTCAACATTT
TTGGATTCCCGAGATCAACTTATTTGAAGACATCCCAGACAGAAAGTTAT
TTTCCCTTTCAAAGATTTTTGATAAGGTTCTTGAAAATCCAGCACCGTAT
ATTCAACATAAAAAGAAAGTTGATAAGGAGCATGACAACCAGTCAAGAGA
TGTCTGCGTTGATTTAGAGGATGTTGAAATGATTGGAAATAATTTGACCG
AACCATTGATACCTAGATCTGCAAGATGATATCTGTGAGATAGCAAATCA
AGCGAAAATACAACACTCTCTTGTCTGTCTTCAATGAACGAGAGCGATTT
TTGCTGATTTTAGCTGACAAATGTTTTCCTAAAATTAGATAAGTAAAGGC
ACTATTTAACTTTCAGATTTATTTTGTAATTTCATAAAATTTTAAACTCT
TCAAAATTTGTCAAATACTATTCAAATTTTATTTTGAGATATTTCCTTGT
CTTTTTCGTTCAGGTATTACAAACTTCAGGCCCGGCGGAAGCGGGAGGCG
TATTTTTTCTCCGTCAGCGTTCGCAACCCAACTTCAGCGGTCGAAACCCA
ACTTAGTGGTCGAAGTAGGCTTCTGTTCATTCTCTAGCGAAAAAAGTTTC
TTATAACCCATTTTAGTGGTCGAAGCCCATGTTTTAAATTGAAGGGGATT
TTTTAAAGGTCGAAACCCAACTCAGGTGAGTAAACAAACTTCACAGATGA
ATGATTCTTTTGTTTTGACATTTCACGAATGGAAAACAGATACCTCTATT
TCCAAGAATTGACTTCATGAAAACACAAGAAAAAATCATTTGTTCATCAT
AAAATTTTTAAATAAATATCATATGATATTTTTCATCCATACACTACAGT
CGTGACTATAGTTACAGTATCAACCTTGTTAAAAACCTTAATCAACAAAA
ATGTGAATTCAGATATTTGTATTTTGAGCGAAATTTTTCTATCACATTGA
AAAATAACATAAAAAGGATAGAGAATCGTATATCAAGTCAACATTTGTTT
CACATAGTGTGTCTGGTTGTTTAGTTGTTTGGGTACTTTAAGTGACTTTA
TTATCTTAAAGTTATATTCGACACCACGATTTTGTCCATCAACTAGAGTC
TATTCACGATAAGTGTGCACTCTTTTTTCTTTCACCTATAACTTTTGAAG
GAATTCTTCAATCTTTATAAATTTGGTATAATTGGAAAGACATTAGTGAG
TGGAACAATTTGAAATAAAAAAAAATTCAAAAAAATTCTAAAAATGAAGA
TGAAAATGAAGAAGAAAAAAATGAAGATCTTGTAGAAAAATGTTATAACT
TTCATTTTCACTGGAGAGATTCTTTGATCTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTTTCATCTTCATTTTTAT
AATCTTTTTAAAGTTTTTTTTATTTCAAATTGTTCCACTCACTAATATCT
TTCCAATGATACCAAATTTATAAAGATTCAGGAATTCCTTCAAAAATTAT
AGGTAAAAGAAAAAAGAGTGCACACTTATCGTGAATAGACTTTAATTACA
CGGCGGAGCTACGGAAGGAGAAGCAGAGAAACTAAAAGATACTTAATCTT
TATAACTAGATATTTATGAGATCATGTTGAAAGAAGAACTAAAAGTAACA
GCCTAGCTCATCGGTAGTGTCCAATTTATTAAATATCCAGCTCAGGGATA
TATTGATGTCCTAGAATTGAGGATTGCTAATTTCTACATCAGAACCCATT
GATCAAATATTATTATTTTTTTTTTTAGAGTAAAATATTCGACGCCACGA
CTTGACGATTTTCTCTTTATTATATCAATTAAAGTAACATTCGGCAGACA
CCACGACTCAACGATTTTGCCGTTCATCGTGCCAATATGAACACAACTAG
NCAAATATTATTTTATTTTATTTTAGAGTAATATTCGACGCCACGACTTG
ACGATTTTGTCTTTATTATCTCAATTAAAGTAACATTCGGCAGACACCAC
GAAATGAACACAACTACCAATCCACTTACATGTGTTGGGCTGAATATAAG
TGAGGGGAATAAAACTTTTTGCTATACTGAAACTTGGAAACCTTTTTCAA
AGGAAATCACATTGGGTGTTGTGCTTCCACCCTGTATTATCGCTTTCTTA
ATCGTTGCTGGTGGATTCCTGTGTAGTGGTATCCTTTATAAACTTGAAGA
CATCCGAGATAAGTATTTGCAACAATATGATAGTATAAATGAAAGTTTTT
TTAGAAAACGAAGTGAAAAATCAAAATGGTTCTTTCTCGTCTTCGTACTC
GATACATGGAGGTATGTTTACGCTGTTGTTGATTTGTGTTTTGATTTGGT
GATCGTTTACAAACTCCAACAAAGTTTATATTTTCATGAAGCGATCTATC
AGAATGATGCAATCATTTGGTTTTTATATTGTATCGGTTGGTTTGGGTTT
TTTTCCAAAATGCAAGGGTTCAGCTTTATTTTGAAGAAGAAACCGCCACC
TCAAAACAAAGGATTTACAGATTGGAAACTGTTTTTTACACTCTCACAAT
TTTTCCTTGATGAAGGTCCTGAATTAATTTTACAATTTTTCTATATCGAA
AATTATGAAGTTCGATATAAAGCTAAATATATCCTACATGATATGATCCT
ATACAAGGACTTTGTATACATCATAGTATGCGTTTCAAAATGCATTTACC
ATTTCTCAAAAACACTTACAGTGATGAAGGATCGGACTCAAAGCTTAAGA
GATGTCGTTGATAAGCTCCTTTACATATCCATATGGCTTTTTACCATAGC
TTCGATTCTAAGAGTCATCGCCCATTTTGTGCAGCATCTAAACAACGAGT
TAACCAGGTTCTGTTACAAAGAATGGAATGGTCGTATCTACCAAACACCT
TTTGATCTGAAATGTATGAGCATCTTGGATTGGCTTCTTTTAGCATTTTC
AGCCATCCCAGCACTTTGTTTTGTCATTGCGTTCTTCATCTTTGTGGTGG
TCCGCTGCCAGGAGTGCCGCATTGAGTCACATGACGCAGACACTGAACCA
ATACTTGAAAGATCGTCAGAAGCACGTGTTTGACTCCATTTTTTGAAGAC
TAAACACTAAACACAACAATTTTGAAATGTATGAAGAGACCCCCAGAAGC
GCACTGCATCATGTTATCTCGTCAAGTTTGTTCCCCCAACACAATCACAA
AAATTGACTAAATTTATGTTTACCCTATCACGCACGTCAACAAAATCCTG
ATCACACTGTCATGCAAATATAAATTTAGAGTCACGAAAAAGCTTCAATT
TACACCGTCATCTTAACCGCCTGGAAATCTCCTTGAATACTTGAAGACAG
GTTTTCATTGGTTTTTCTTCTTCTGGAAAGCTCTTATTTCTTCAGCATGG
TCGGAAATGAAGAAATTTCGACCAAACAAACACTGGAAGTGAAGCGAACA
TTGATATTGGACAATCATTATCCAAAGTCTTGGCAATTTATAATATTTAT
TTAAAAAGTCTTATACTCATTTAAAATTTATGCACCACTACAGATATTAT
CTTATTGAAAATTATTCACAAAAAGTATGATAACGTCAACTTTTTATAGG
GAAGTCGAGGGCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050092-exon-scaffold_167-1575043694:993497..993526 | TCONS_00050092-exon-scaffold_167-1575043694:993497..993526 | Clytia hemisphaerica | exon |
| TCONS_00050092-exon-scaffold_167-1575043694:986813..988500 | TCONS_00050092-exon-scaffold_167-1575043694:986813..988500 | Clytia hemisphaerica | exon |
| TCONS_00050092-exon-scaffold_167-1510915933:993497..993526 | TCONS_00050092-exon-scaffold_167-1510915933:993497..993526 | Clytia hemisphaerica | exon |
| TCONS_00050092-exon-scaffold_167-1510915933:986813..988500 | TCONS_00050092-exon-scaffold_167-1510915933:986813..988500 | Clytia hemisphaerica | exon |
| TCONS_00050092-exon-scaffold_167-1491911889:993497..993526 | TCONS_00050092-exon-scaffold_167-1491911889:993497..993526 | Clytia hemisphaerica | exon |
| TCONS_00050092-exon-scaffold_167-1491911889:986813..988500 | TCONS_00050092-exon-scaffold_167-1491911889:986813..988500 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:986813..993526 - |
Blast
The following BLAST results are available for this feature:
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