|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050098 ID=TCONS_00050098|Name=TCONS_00050098|organism=Clytia hemisphaerica|type=transcript|length=1506bp
GGCATTAGAACTAAAGGAGAAAGTTTAAAGCCTAAAACCAAAGTTATGTT
TATGCCCTTGTTAGACCGAACACCTTCAGATCCATCGACAGTTCTTACCA
CAATGTTGGAGGCAGAGCTGGTGATCCATGAGCANCTGTAAAAGTACAAC
CAATCCTAAATTGAATCGATTGCCCCCGACAGAAGAAGCTTTAATACCAA
ACATATCACGAGCGCACTGGCAACTTGCTATTCATTATTCGTGTATGGAA
CCGGATCCACCTGCTGGTGATCCATGCAAGTTTGGGTGGACACGAGATGA
GCAAGCAAAAGCCCTTAATCTATTAATGCTTCCAACTGGTACAAAGTATG
CTCCCGATGTTGTTCTCAAAAGCACAAGGTGTAATAAGGTGTAATTGTAA
AGgtaacttttctttttcaatagtaaTCATAGTCACAATAGTCTTTTTTA
TCAActatccaaaaaatatctgcgaTCTGATAGGTtaaaaaagagtacaa
tatatcttgtattttacacgtacaaattataaattgacgaaaagagcGTA
AAGTATcatacaatatggaaatatttcactcgttccggattttctgtata
ttttcctcgcctaaatattgtacggaaaaattctcggaactcgtaaaata
tttctcatatgtACTcacaactgtccgataactattacatatcaCTTTTA
CAATTACAAATTTAGGCTCTTCCACTCTTTTCAGCTTCCCAGTGTAAAAC
TAACGCATGTTCGTGTGCCAAAGCAAAGATGGGTTGTAGCGAATTTTGTG
GATGTGGAGACGAGGGTGACACGAACGAATGCAAAAACAAATGGAACGAG
AACCAGTACGAAAGCGATGATGAAgacgaaaatgaagatgaatttGAGGA
TGAGGACGAAGACAACGAAGACtagtcattttgaaaaatatttttagtgt
tCATAAGTTTTTGAActttcttaaaatgtttctaatAATTTGCTCATTTC
ATTTCAAGGTCGTTATTTTTTGCCTatgttcagagaaaaaaaattgaaaa
aatgaaaatagtgacgtcatcgtttttggcattttctcacgTTGAGtaca
ttttcagcttttgatgtaagcaaaaaagttgttaagcttgaaatttcctt
tccaacaGTGTGTCACATGCctatattcaaagaaaaaattgaaaaatgaa
aatgatgacgtcagcgtttttgacaaatttagtttttgatgtaagcaaaa
aagttgttgagctggaaatttcctttccaacggtatatgatatgacaatg
tttgaagaacttaaaattttcacatttttggatttttgcaaaaatccgcc
attttgaaaaatccgccattttgaaaaatgctcAACCGTAGAAAAATGGC
ACTCTGGCTTAAAATGATCCTAGGGGTCCCAACTATCAATTCCAGCAATA
AAATGTTGTTCATACTCCATGTATAGGTTGACCTGGTTCAGCCCCTGAct
agtttt Run BLAST on NCBI transcript from alignment at scaffold_167:1079981..1081603- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050098 ID=TCONS_00050098|Name=TCONS_00050098|organism=Clytia hemisphaerica|type=transcript|length=1623bp|location=Sequence derived from alignment at scaffold_167:1079981..1081603- (Clytia hemisphaerica)
GGCATTAGAACTAAAGGAGAAAGTTTAAAGCCTAAAACCAAAGTTATGTT
TATGCCCTTGTTAGACCGAACACCTTCAGATCCATCGACAGTTCTTACCA
CAATGTTGGAGGCAGAGCTGGTGATCCATGAGCANCTGTAAAAGTACAAC
CAATCCTAAATTGAATCGATTGCCCCCGACAGAAGAAGCTTTAATACCAA
ACATATCACGAGCGCACTGGCAACTTGCTATTCATTATTCGTGTATGGAA
CCGGATCCACCTGCTGGTGATCCATGCAAGGTAATAACTAATTGATATTT
AACATGTTAGTTTTAACAGGTTTGATTCACTTACCTCTGCAATCAGGGAT
TGATACAGCGAAGAATAGTTCAATAAATTCCATATTTTTACCTTCAGTTT
GGGTGGACACGAGATGAGCAAGCAAAAGCCCTTAATCTATTAATGCTTCC
AACTGGTACAAAGTATGCTCCCGATGTTGTTCTCAAAAGCACAAGGTGTA
ATAAGGTGTAATTGTAAAGGTAACTTTTCTTTTTCAATAGTAATCATAGT
CACAATAGTCTTTTTTATCAACTATCCAAAAAATATCTGCGATCTGATAG
GTTAAAAAAGAGTACAATATATCTTGTATTTTACACGTACAAATTATAAA
TTGACGAAAAGAGCGTAAAGTATCATACAATATGGAAATATTTCACTCGT
TCCGGATTTTCTGTATATTTTCCTCGCCTAAATATTGTACGGAAAAATTC
TCGGAACTCGTAAAATATTTCTCATATGTACTCACAACTGTCCGATAACT
ATTACATATCACTTTTACAATTACAAATTTAGGCTCTTCCACTCTTTTCA
GCTTCCCAGTGTAAAACTAACGCATGTTCGTGTGCCAAAGCAAAGATGGG
TTGTAGCGAATTTTGTGGATGTGGAGACGAGGGTGACACGAACGAATGCA
AAAACAAATGGAACGAGAACCAGTACGAAAGCGATGATGAAGACGAAAAT
GAAGATGAATTTGAGGATGAGGACGAAGACAACGAAGACTAGTCATTTTG
AAAAATATTTTTAGTGTTCATAAGTTTTTGAACTTTCTTAAAATGTTTCT
AATAATTTGCTCATTTCATTTCAAGGTCGTTATTTTTTGCCTATGTTCAG
AGAAAAAAAATTGAAAAAATGAAAATAGTGACGTCATCGTTTTTGGCATT
TTCTCACGTTGAGTACATTTTCAGCTTTTGATGTAAGCAAAAAAGTTGTT
AAGCTTGAAATTTCCTTTCCAACAGTGTGTCACATGCCTATATTCAAAGA
AAAAATTGAAAAATGAAAATGATGACGTCAGCGTTTTTGACAAATTTAGT
TTTTGATGTAAGCAAAAAAGTTGTTGAGCTGGAAATTTCCTTTCCAACGG
TATATGATATGACAATGTTTGAAGAACTTAAAATTTTCACATTTTTGGAT
TTTTGCAAAAATCCGCCATTTTGAAAAATCCGCCATTTTGAAAAATGCTC
AACCGTAGAAAAATGGCACTCTGGCTTAAAATGATCCTAGGGGTCCCAAC
TATCAATTCCAGCAATAAAATGTTGTTCATACTCCATGTATAGGTTGACC
TGGTTCAGCCCCTGACTAGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050098-exon-scaffold_167-1575043694:1081324..1081603 | TCONS_00050098-exon-scaffold_167-1575043694:1081324..1081603 | Clytia hemisphaerica | exon |
| TCONS_00050098-exon-scaffold_167-1575043694:1079981..1081206 | TCONS_00050098-exon-scaffold_167-1575043694:1079981..1081206 | Clytia hemisphaerica | exon |
| TCONS_00050098-exon-scaffold_167-1510915933:1081324..1081603 | TCONS_00050098-exon-scaffold_167-1510915933:1081324..1081603 | Clytia hemisphaerica | exon |
| TCONS_00050098-exon-scaffold_167-1510915933:1079981..1081206 | TCONS_00050098-exon-scaffold_167-1510915933:1079981..1081206 | Clytia hemisphaerica | exon |
| TCONS_00050098-exon-scaffold_167-1491911889:1081324..1081603 | TCONS_00050098-exon-scaffold_167-1491911889:1081324..1081603 | Clytia hemisphaerica | exon |
| TCONS_00050098-exon-scaffold_167-1491911889:1079981..1081206 | TCONS_00050098-exon-scaffold_167-1491911889:1079981..1081206 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1079981..1081603 - |
Blast
The following BLAST results are available for this feature:
|
