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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050099 ID=TCONS_00050099|Name=TCONS_00050099|organism=Clytia hemisphaerica|type=transcript|length=1169bp
TAGAAGCAAACTTTTGTAaaacatttctactttaaaaattCAGGGAGAAG
CCTTAAATCTAGAACCCCTCCTGATTACCATACCACAGAAATAAGTTGAT
AATGATGATAATAAATCACTTTATAATCTGATATGAAACAATAATATGCA
CTAAataacaaaatttacaaaatttttaacaaagtttttaccaatttcct
ttttgtttcttcaattttctcAGCTTTGTAAATGGCTTAGAAAGGTAAAA
ATCTAATTATAAAGGTATAatgaaatttatataaaaattttacacactaa
atttaaaaaagataaaatctgACACAAGactggaaacaacaaaaatcata
tCATGCTTACgcaaaattactgtttaaaTTACTTCTTTGCTCTAGCATCA
AAGTCAATGTTTTTGAATGGTAAATATTCTTCTGAAGGTGTTGCACAAGA
ATGATGGCTAATGATCAATTTCTGTAGATCATCcatatcttgattttttt
caaaggatTTAGCTTCTACTCCAACAGCTTCTggtattttggccattgcc
acGAGCCCATCTTTaaaatcaaccatataattttGTACTTCAGCTTCATC
ATTTCGATCAATTCCAATCCATCTGGTCAGTTCattatctttctttaatt
cagTCAAACTATCAGTCAATTTCTTGtggatttcattttcatctttttgt
gACGACACATAATGAGCACCTTCCCGTCGTGGTTGAGAAGGTTTTAATAT
ACTCCTATCTTTATTGGAAGATCTCTGTGAAGGTTTATTATTAATTCTGT
TAGTTGTAGATTCAGCCAGCGTAACCCAAATGGCCGATCCATGTAAGATA
GTACCGTGAAGCTGAGTACACGCATTCACACACTCCTCAATTGTTTTGAA
CCTGACAAATGCGTAAGTAAAATTAGTACTAAATTTGTCTTGGATGTAAA
TATCTCGGACATCTCCAGTGCcaacaaataatattttcaattctTCGATT
GTGACTTTGGAATTCAAATTTCCAATATGAACAGTGTAAAGGTCTTTCTT
ATTAACGATTTCATTgtacattttcaaaaaaatggtgcTAAATCAAATGa
tgtttattttcaataaagatGTGCTAAATCAACTGTTGcagaaaaattag
ccaaaatattcaagctaaa Run BLAST on NCBI transcript from alignment at scaffold_167:1180936..1182415- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050099 ID=TCONS_00050099|Name=TCONS_00050099|organism=Clytia hemisphaerica|type=transcript|length=1480bp|location=Sequence derived from alignment at scaffold_167:1180936..1182415- (Clytia hemisphaerica)
TAGAAGCAAACTTTTGTAAAACATTTCTACTTTAAAAATTCAGGGAGAAG
CCTTAAATCTAGAACCCCTCCTGATTACCATACCACAGAAATAAGTTGAT
AATGATGATAATAAATCACTTTATAATCTGATATGAAACAATAATATGCA
CTAAATAACAAAATTTACAAAATTTTTAACAAAGTTTTTACCAATTTCCT
TTTTGTTTCTTCAATTTTCTCAGCTTTGTAAATGGCTTAGAAAGGTAAAA
ATCTAATTATAAAGGTATAATGAAATTTATATAAAAATTTTACACACTAA
ATTTAAAAAAGATAAAATCTGACACAAGACTGGAAACAACAAAAATCATA
TCATGCTTACGCAAAATTACTGTTTAAATTACTTCTTTGCTCTAGCATCA
AAGTCAATGTTTTTGAATGGTAAATATTCTTCTGAAGGTGTTGCACAAGA
ATGATGGCTAATGATCAATTTCTGTAGATCATCCATATCTTGATTTTTTT
CAAAGGATTTAGCTTCTACTCCAACAGCTTCTGGTATTTTGGCCATTGCC
ACGAGCCCATCTTTAAAATCAACCATATAATTTTGTACTTCAGCTTCATC
ATTTCGATCAATTCCAATCCATCTGGTCAGTTCATTATCTTTCTTTAATT
CAGTCAAACTATCAGTCAATTTCTTGTGGATTTCATTTTCATCTTTTTGT
GACGACACATAATGAGCACCTTCCCGTCGTGGTTGAGAAGGTTTTAATAT
ACTCCTATCTTTATTGGAAGATCTCTGTGAAGGTTTATTATTAATTCTGT
TAGTTGTAGATTCAGCCAGCGTAACCCAAATGGCCGATCCATGTAAGATA
GTACCGTGAAGCTGAGTACACGCATTCACACACTCCTCAATTGTTTTGAA
CCTGACAAATGCGTAAGTAAAATTAGTACTAAATTTGTCTTGGATGTAAA
TATCTCGGACATCTCCAGTGCCAACAAATAATATTTTCAATTCTTCGATT
GTGACTTTGGAATTCAAATTTCCAATATGAACAGTGTAAAGGTCTTTCTT
ATTAACGATTTCATTGTACATTTTCGAAAAAATGGTGCTAAATCCAATGC
TGTTTATTTTCAATAAAGATGTGCTTTAATCAACTGTTGCAGAAAAATTA
GCCAAAATATTCAAGCTAAAATTTTAGAAAAAAAATTTCGTGATCCAAGT
CCCAAGTCCTATACCTAGTATAAAATATTTGTTGATTTAATATTGTTTTT
AGGAAAATCACATCTCTATTCTTTTGCCATTCTCGAAATCTTAAAGGTTT
TTAAGATGTAAAAAGGCCTTCATTTCGTGGGTGAAAATGACTATAATGCG
CAATAGCGTGGTGGGTNAATTTCATTGTACATTTTCAAAAAAATGGTGCT
AAATCAAATGATGTTTATTTTCAATAAAGATGTGCTAAATCAACTGTTGC
AGAAAAATTAGCCAAAATATTCAAGCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050099-exon-scaffold_167-1575043694:1181347..1182415 | TCONS_00050099-exon-scaffold_167-1575043694:1181347..1182415 | Clytia hemisphaerica | exon |
| TCONS_00050099-exon-scaffold_167-1575043694:1180936..1181035 | TCONS_00050099-exon-scaffold_167-1575043694:1180936..1181035 | Clytia hemisphaerica | exon |
| TCONS_00050099-exon-scaffold_167-1510915933:1181347..1182415 | TCONS_00050099-exon-scaffold_167-1510915933:1181347..1182415 | Clytia hemisphaerica | exon |
| TCONS_00050099-exon-scaffold_167-1510915933:1180936..1181035 | TCONS_00050099-exon-scaffold_167-1510915933:1180936..1181035 | Clytia hemisphaerica | exon |
| TCONS_00050099-exon-scaffold_167-1491911889:1181347..1182415 | TCONS_00050099-exon-scaffold_167-1491911889:1181347..1182415 | Clytia hemisphaerica | exon |
| TCONS_00050099-exon-scaffold_167-1491911889:1180936..1181035 | TCONS_00050099-exon-scaffold_167-1491911889:1180936..1181035 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1180936..1182415 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000504 | RRM_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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