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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050109 ID=TCONS_00050109|Name=TCONS_00050109|organism=Clytia hemisphaerica|type=transcript|length=3705bpRun BLAST on NCBI protein sequence of TCONS_00050109-protein >TCONS_00050109-protein ID=TCONS_00050109-protein|Name=TCONS_00050109-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1019bp MFDDDENDDYVTIGTPFEIPDDIENAPLKKQAKVSDQIVTDKQGRRRFHGRun BLAST on NCBI transcript from alignment at scaffold_167:1320554..1353045- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050109 ID=TCONS_00050109|Name=TCONS_00050109|organism=Clytia hemisphaerica|type=transcript|length=32492bp|location=Sequence derived from alignment at scaffold_167:1320554..1353045- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_167:1320554..1353045- >TCONS_00050109 ID=TCONS_00050109|Name=TCONS_00050109|organism=Clytia hemisphaerica|type=CDS|length=27540bp|location=Sequence derived from alignment at scaffold_167:1320554..1353045- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050109 vs. Swiss-Prot (Human)
Match: GPTC1 (G patch domain-containing protein 1 OS=Homo sapiens GN=GPATCH1 PE=1 SV=1) HSP 1 Score: 370.933 bits (951), Expect = 4.339e-110 Identity = 257/703 (36.56%), Postives = 361/703 (51.35%), Query Frame = 3
Query: 120 DDDENDDYVTIGTPFEIPDDIENAPLKKQAKVSDQIVTDKQGR-RRFHGAFTGGFSAGYFNTVGSKEGWTPSTFKSSRKSKNQEIDEDEGSGQNQRFQQRPEDFMDDEDFSEHGIAPRRLKTTSDFTS-TEEELNSRKRQITQHLNENEEQPASDSLLDELLLPTKLSIGIQILKKMGWKQGQGVGEK-DRAASVPEPVKGKKVYGCMRPQAT------DSTDMSAFKKLLAPKDVVQISFTRKDNFHGIGYSGLDPTTAMFGSGLESRSFKPTGKE--------------KRGIKGHAFGVGAFEDEDKDIYGVDNMSNYDISMTVEDESHK-HGWSGAPKLKQNK----------GCLSGFEKGSRVLKAPSTQKMISIPSGFIPKHTF----PSNEKNSSITCTQN--------DGDKNNKARLTSKERGLMFGETVKTLDDVNKWALKWDDRPAQEENDSEKDRDMETEKQEKSNRFSSRWDKEINQVRPKIINKPSPADTAEETKPKKDV--PMYDVKSKTFRPFAKNPEKQARYEEF-VKAKKENRDAVFQ-YDTSVTEWERQRERDEFTRASILYRPLNSMFANRFTPATSADPQNITLKSTMVEKPNDGSGGVPTKESNTFSSENDDRLSDDMKAAKMGMYGKLTRSVHQWHPDQLLCKRFNIPEPYPGSKIRGVPDRARKSKAGSFFERDFLSI 2078
D D +D V+ GT E ++ E KK + DQ V D++GR +RFHGAF+GGFSAGYFNTVGSKEGWTPSTF SSR+++ + PEDFMD+ED SE GIAP+ + TT DF S T++ + + RQ+ P + +LLD+L+ P KLS+G ++L+KMGWK+GQGVG + R +P G K+YGC P + + D APKDV + FT KDN HG+ Y GLDP A+FG+ E + G E K GI G AFGVGA E+ED DIY + +S YD + E+ +GW+ + K K L GF S+ L + +P + P H F + +NS + + D ++K +L + +R + GET + L++ + D E+ ++M+ K+ + +R + Q + SPA A + +K+ F+PFAK+PEKQ RY+EF V K+ +DA+ + D S+TEWER RERDEF RA++LY +S ++RFT A D S VE P D END + D A KM M+GKLTR +WHPD+LLCKRFN+P+PYP S + G+P R ++ K F +FL++
Sbjct: 5 DSDSEEDLVSYGTGLEPLEEGERP--KKPIPLQDQTVRDEKGRYKRFHGAFSGGFSAGYFNTVGSKEGWTPSTFVSSRQNR------------ADKSVLGPEDFMDEEDLSEFGIAPKAIVTTDDFASKTKDRIREKARQLAA---ATAPIPGA-TLLDDLITPAKLSVGFELLRKMGWKEGQGVGPRVKRRPRRQKPDPGVKIYGCALPPGSSEGSEGEDDDYLPDNVTFAPKDVTPVDFTPKDNVHGLAYKGLDPHQALFGTSGEHFNLFSGGSERAGDLGEIGLNKGRKLGISGQAFGVGALEEEDDDIYATETLSKYDTVLKDEEPGDGLYGWTAPRQYKNQKESEKDLRYVGKILDGFSLASKPLSSKKIYPPPELPRDYRPVHYFRPMVAATSENSHLLQVLSESAGKATPDPGTHSKHQLNASKRAELLGET--PIQGSATSVLEF-----LSQKDKERIKEMKQATDLKAAQLKAR---SLAQNAQSSRAQLSPAAAAGHCSWNMALGGGTATLKASNFKPFAKDPEKQKRYDEFLVHMKQGQKDALERCLDPSMTEWERGRERDEFARAALLYASSHSTLSSRFTHAKEED------DSDQVEVPRD--------------QEND--VGDKQSAVKMKMFGKLTRDTFEWHPDKLLCKRFNVPDPYPDSTLVGLP-RVKRDKYSVF---NFLTL 653 The following BLAST results are available for this feature:
BLAST of TCONS_00050109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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