TCONS_00050110 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050110
Unique NameTCONS_00050110
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050110 ID=TCONS_00050110|Name=TCONS_00050110|organism=Clytia hemisphaerica|type=transcript|length=364bp
AATTGGAATTTTGGAGTATAATGGACCACCTTGAATTTCACCAGTTTTCT
TATCGATGAAAACTACAGTTAAATAAATCGTCATTGATTCTTTAAGCTCC
TCAACATGCAGcacaacttgatttttttgacCAGCATTGATAGACATTTT
ATCGTTGAATTTCTGTTTTCCAAATTTGGTAACTCCTTTGATATCATCCC
AAATAGGTTGAATGATTTGGTTCTCGTCTGCCTGATGGTAGATTgtcaac
caatcagctttttCGTTTGACAATGGCAAAACATTCCACGTTAACGTTAC
ATTTGAATTTCTTGAAACTTGTACAGACTTTTGTGTAGGATCGATTCTGC
CAGGCCaaactaaa
Run BLAST on NCBI

transcript from alignment at scaffold_167:1325812..1326796-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050110 ID=TCONS_00050110|Name=TCONS_00050110|organism=Clytia hemisphaerica|type=transcript|length=985bp|location=Sequence derived from alignment at scaffold_167:1325812..1326796- (Clytia hemisphaerica)
AATTGGAATTTTGGAGTATAATGGACCACCTTGAATTTCACCAGTTTTCT
TATCGATGAAAACTACAGTTAAATAAATCGTCATTGATTCTTTAAGCTCC
TCAACATGCAGCACAACTTGATTCTTTTGACCAGCATTGATAGACATTTT
ATCGTTGAATTTCTGTTTTCCAAATTTGGTANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAG
AATTGAACCATTTTAAATTTTGCGGAAAATTTTTCTAAAAAGATGTGTCA
AAAGTTATGACTGCTTTTTTAAGCAAAATCCAGATGAAAAATAGATGAAA
AACCACTATTTTGAAGATTTCGAGACAAAGAAGCATTTACAAAAATTTTC
CGCAAAAATTTTTCTTGTTTGGTAAAAGATACACCATCTACTGCGAGAAA
CTTTTCAAAATGTTTTTTCTTCGCCGAAACTAAGCTCTTCAAAGTTGAAA
TACTCTTCCTCGCAAAAGTCTTCAATTTCTTCTTCATCAAACTTCTTCAA
TGCAATTTTTGAATTTTCAGATTCAGGAATAGTTTGTCTAACAGAAAATG
TATAACATGCCATAGTTTTGTTGGTTACATCAGTCAGAAAACACATTTTA
AACACGGCAATTATGAAAAATTCACTATGGTCAGAGCCCTTAAATAAATC
GTCATTGATTCTTTAAGCTCCTCAACATGCAGCACAACTTGATTTTTTTG
ACCAGCATTGATAGACATTTTATCGTTGAATTTCTGTTTTCCAAATTTGG
TAACTCCTTTGATATCATCCCAAATAGGTTGAATGATTTGGTTCTCGTCT
GCCTGATGGTAGATTGTCAACCAATCAGCTTTTTCGTTTGACAATGGCAA
AACATTCCACGTTAACGTTACATTTGAATTTCTTGAAACTTGTACAGACT
TTTGTGTAGGATCGATTCTGCCAGGCCAAACTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031726XLOC_031726Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050110-exon-scaffold_167-1575043694:1326692..1326796TCONS_00050110-exon-scaffold_167-1575043694:1326692..1326796Clytia hemisphaericaexon
TCONS_00050110-exon-scaffold_167-1575043694:1325812..1326070TCONS_00050110-exon-scaffold_167-1575043694:1325812..1326070Clytia hemisphaericaexon
TCONS_00050110-exon-scaffold_167-1510915933:1326692..1326796TCONS_00050110-exon-scaffold_167-1510915933:1326692..1326796Clytia hemisphaericaexon
TCONS_00050110-exon-scaffold_167-1510915933:1325812..1326070TCONS_00050110-exon-scaffold_167-1510915933:1325812..1326070Clytia hemisphaericaexon
TCONS_00050110-exon-scaffold_167-1491911889:1326692..1326796TCONS_00050110-exon-scaffold_167-1491911889:1326692..1326796Clytia hemisphaericaexon
TCONS_00050110-exon-scaffold_167-1491911889:1325812..1326070TCONS_00050110-exon-scaffold_167-1491911889:1325812..1326070Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1325812..1326796 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.13194	0.521891	2.15583	0.553111	1.97569	0	2.92977	4.60341	3.28866	6.65394	2.69509	2.375	1.90988	4.1547	8.73351	5.70781	3.69156	5.17094	1.3749	3.97575	0.585718	1.18359	9.62541	8.67315
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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