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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050117 ID=TCONS_00050117|Name=TCONS_00050117|organism=Clytia hemisphaerica|type=transcript|length=454bp
AACACATCAGACAAGCATCTACCTGCTAACAGTGTTGGTGCCAAGGCTGC
ATTTTTTGATGGGAAGAACAAGACAAACGGCCAatataaacaacaaaaaa
tatcaacaaaaaatgGACGACCTCAAAACTATCCAAAAATCGATGCGGCT
TCTTCAACtaagcaacaaagaaaaagaggCAATCAGGCTTCAACGAGTGA
TTtgccaaaaaaggtaaaattgAGTGATGGAAAGTTTGCTATAAAATCAA
AGGAGACAGAAAATTTTCAACGTTCAAGGACTAATGGAAAAGTCACATGT
GTGAAAATAGATAGTGACAACCAGCTCCCGAGTGAACAAGAACTCTTTTC
TTCATGTTCAACTCGTGAAGTTATTGTCAAACGAGAAGTATTTGAATCCA
CACAACAAGTTGACCAACAACCTAAAAATATCGTACAAACAAACAAGGTT
ACTG Run BLAST on NCBI transcript from alignment at scaffold_167:1512149..1514882- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050117 ID=TCONS_00050117|Name=TCONS_00050117|organism=Clytia hemisphaerica|type=transcript|length=2734bp|location=Sequence derived from alignment at scaffold_167:1512149..1514882- (Clytia hemisphaerica)
AACACATCAGACAAGCATCTACCTGCTAACAGTGTTGGTGCCAAGGCTGC
ATTTTTTGATGGGAAGAACAAGACAAACGGCCAATATAAACAACAAAAAA
TATCAACAAAAAATGGACGACCTCAAAACTATCCAAAAATCGATGCGGCT
TCTTCAACTAAGCAACAAAGAAAAAGAGGCAATCAGGCTTCAACGAGTGA
TTTGCCAAAAAAGGTAAAATTGAGTGATGGAAAGTTTGCTATAAAATCAA
AGGAGACAGAAAATTTTCAACGTTCAAGGACTAATGGAAAAGTCACATGT
GTGAAAATAGATAGTGACAACCAGCTCCCGAGTGAACAAGAACTCTTTTC
TTCATGTTCAACTCGTGAAGTTATTGTCAAACGAGAAGTATTTGAATCCA
CACAACAAGTTGACCAACAACCTAAAAATATCGTACAAACAAACAAGGTT
ACTGAATACCAAGATGCTTCACCTGAGGCCCCAAACAAGGTTACTGACCA
CCAAGAAGCTTCACCCGAAGCACCAAACAAGGTTATTGACCACCAAGATG
CTTCACCTGAGGCACCGAACAAGGTTACTGACCACCAAGATGCTTCACCT
GAGGCACCGAACAAGGTTACTGACCGCCAAGATGCTTCACCTGAGGCACC
GAACAAGGTTCCTGACCACCAAGATGCTACAACTGAGGCACCGAACAAGG
TGACTGACCACCGTGTAGCTACAACCGCGAAAGCTAACAAGGTTACTGAC
TACCAAGATGCTACAACTGAGGCTACAACTGAGGCGCACAACAAGGTTGC
ACAGTCCCAAGATGCTACAACCGAGGTACTGAACAAGGGTACTGACCACC
AAGATGCTTCACCTGAGGCACCGAACAAGGTTCCTGACCACCAAGATGCT
ACAACTGAGGCACCGAACAAGGTGACTGACCACCGTGTAGCTACAACCGC
GAAAGCTAACAAGGTTACTGACTACCAAGATGCTACAACTGAGGCTACAA
CTGAGGCGCACAACAAGGTTGCACAGTCCCAAGATGCTACAACCGAGGTA
CTGAACAAGGGTACTGACCACCAAGATGCTTCACCTGAGGCACCGAACAA
GGTTCCTGACCACCAAGATGCTACAACTGAGGCACCGAACAAGGTGACTG
ACCACCGTGTAGCTACAACCGCGAAAGCTAACAAGGTTACTGACTACCAA
GATGCTACAACTGAGGCTACAACTGAGGCGCACAACAAGGTTGCACAGTC
CCAAGATGCTACAACCGAGGTACTGAACAAGGGTACTGACCACCAAGATG
CTTCACCTGAGGCACCGAACAAGGTTCCTGACCACCAAGATGCTACAACT
GAGGCACCGAACAAGGTGACTGACCACCGTGTAGCTACAACCGCGAAAGC
TAACAAGGTTACTGACTACCAAGATGCTACAACTGAGGCTACAACTGAGG
CGCACAACAAGGTTGCACAGTCCCAAGATGCTACAACCGAGGTACTGAAC
AAGGGTACTGACCACCAAGATGCTTCACCTGAGGCACCGAACAAGGTTCC
TGACCACCAAGATGCTACAACTGAGGCACCGAACAAGGTGACTGACCACC
GTGTAGCTACAACCGCGAAAGCTAACAAGGTTACTGACTACCAAGATGCT
ACAACTGAGGCTACAACTGAGGCGCACAACAAGGTTGCACAGTCCCAAGA
TGCTACAACCGAGGTACTGAACAAGGGTACTGACCACCAAGATGCTTCAC
CTGAGGCACCGAACAAGGTTACTGACCCCCAAGATGCTACAACCGAGGCA
CCTAACAAGGTTACTGACTACCAAGATGCTACAACTGAGGCTACAACTGA
GGCACCGAACAAGGTTACTGACCACCAAGATGCTACAACCGAGGTACTGA
ACAAGGCTACTGACCACCAAAATGCTACAACCGAGGCACCGAACAAAGTT
ATTGACCACAAAGAAGTTTCAACCGAAGCACCGAACAAGGTTACTGACCA
CCAAGAAGCTTCACCCGAGGAACCAAGCAAGATTACTGACCACCAAGATG
CTACAACTGAGGCTACAACTGAGGCTACAACTGAGGCACCGAACAAGGTG
ACTGACTACCAAGATGCTACAACTGAGGCACCGAACAAGGTTACTGACCA
CAAAGAAGCTTCATCAGAGGCACCAAATAAGGCTACTGACAACCAAGATG
CTACAACCGAGGCACCGAACAAGGTTACTGACCACCAAGATGCTTCAACC
GAGGCACCGAACAAGGTGACTGACTACCAAGATGCTACAACTGAGGCACC
GAACAAGGTTACTGACCACCACGAACCTTCAACCGAGGCACCGAACAAGG
TTACTGACCACCAAGAAGCTGCAACCGAGGCACTGAGCAAGGTTACTGAC
TACCTAGATGTTACAACCGAGGCACCGAACAAGGTTACTGACCACCAAGA
AGCTACAACCGAGGCACCGAATAAGGTTATGGACCACCAAGAAGCTTCAC
CCGAAGCACCAAGCAAGGTGACTGACCACCAAGATGCTTCAACTGAGGCA
CCGAACAAGGTTACTGACCACCAAGATGCTTCAACCGAGGCACCGAACAA
GGTGACTGACTACCAAGATGCTACAACTGAGGCACCGAACAAGGTCACTG
ACCACAAAGAAGCTTCAACCGAAGCACCGAACAAGGTTACTGACCACCAA
GAAGCTACAACCGAGGAACCAAACAAGGTTACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050117-exon-scaffold_167-1575043694:1514436..1514882 | TCONS_00050117-exon-scaffold_167-1575043694:1514436..1514882 | Clytia hemisphaerica | exon |
| TCONS_00050117-exon-scaffold_167-1575043694:1512149..1512155 | TCONS_00050117-exon-scaffold_167-1575043694:1512149..1512155 | Clytia hemisphaerica | exon |
| TCONS_00050117-exon-scaffold_167-1510915933:1514436..1514882 | TCONS_00050117-exon-scaffold_167-1510915933:1514436..1514882 | Clytia hemisphaerica | exon |
| TCONS_00050117-exon-scaffold_167-1510915933:1512149..1512155 | TCONS_00050117-exon-scaffold_167-1510915933:1512149..1512155 | Clytia hemisphaerica | exon |
| TCONS_00050117-exon-scaffold_167-1491911889:1514436..1514882 | TCONS_00050117-exon-scaffold_167-1491911889:1514436..1514882 | Clytia hemisphaerica | exon |
| TCONS_00050117-exon-scaffold_167-1491911889:1512149..1512155 | TCONS_00050117-exon-scaffold_167-1491911889:1512149..1512155 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1512149..1514882 - |
Blast
The following BLAST results are available for this feature:
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