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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050119 ID=TCONS_00050119|Name=TCONS_00050119|organism=Clytia hemisphaerica|type=transcript|length=2740bp
CAGAAAGATAGCTTCATTTCTGAAGTCAATTTGGATCCGAAGAGCACGCT
CTTAGTaaatttcaatatatttttttggaattttgttatattttattcaa
tttattcATTATTGTTCAAATCATCTCATCAATTCATCGATAGTTGGATC
TACCAAGATGATGGAACCTTCTGATCAGGCGGATTTAACCGCATCAAAGT
CATTCTCTAAAGAGGAAGTAGAGCCACGGCTCCACAACGAACAGACCGCA
ACTTCACTTAACCGCAATGGTTCAAACACAACCCAGGATCAAATGGGTGA
AATGGAAAAGGCTTTAAGCCAACACAATCAACTTTCTTTGAACCAAGAAG
AAGGAAACAAGaCATCCAATGTATCCTTATTGCAAGAGGATGACAGAACG
CCAACCGCTCAGCAGGTTTATGATATGGTTCATAGCGCAGACAACATTCA
CATCTCATCAACCGACGGTAAGAAGGGGCGCTTGGTCAAACGCTCACTTA
AGAAGAAGGCCTCTACAGCAGGAGGGTCTGCGTCGGCGACAAGCACTTTA
TCAAAACCAACCGATTTGGCAAACTCCAACCAGTCTCCGGACTCTGCTGC
TTTAACTTGTttatctcaatcaaacggagaATCCGTAGACGCTTCAAATA
ATTGCAATGCTGAACGTACTTCTTCCGTGGATGATACTGTTAATGGACAG
CAAAAGAAGAAGGGAAACAGTGGACACAACAAAAAATCCTCACCGTCGAA
TAGTGTCGAAGAAATTAACAATGTAATTGAGAAGATATCTTCCATGGATT
GTAAAGAATGTGAACAAGCTTGTGGAAGTGAAAATCCTCAACCCAAAGGA
AATATCTTATCAAAGATAGCGTTTTTTGAAGAGCGGCGCACAGTTGAATT
GCCAGCTGTTGACAGTGCATCACCAAGTGATAATACCATTGTTCCACAAG
GCCAACTAAAATCTCCAAACGCCATTAAAAGTCATTTCACTGAGACTCCA
AAGGATTCTCAAAAACAACTTCTTATTCAGTCAAATGTTCCAGAAGTATC
CCCTGCAGATACTATGAACAAACCGGAACAGCTCCTTCCAAGTTCTATGG
ACAAGGTTCCGGTAACAGTACCCCAAACCAACAAAAGTACTTGCGAGGTT
TCCCAAGACACACCAGTGCAACCACAGCTCAAAAAACCTAGTTACGCTGA
TATGGCTATGAAACCTGCTGTAAAACCCATCCTTCCTCCAAAGAAAGTGT
CTGTAGAAACATCAAAAGATGTAAAACAAAGAACATCTAAGACGAATACG
GAAAACAAAGCCTCCAGAAAAGGCTCATCAAAAGAGTCCAAGCTGGGTAG
AACTAGATCTGACGCCCGCAAGAAGAGCTCTAATGAGTTTAAGACGTCGA
GTGAAGGCGTTTCCAAAAAGGCGGCGTATTTCAATGCTAAATTTGACGCC
CGTACCAAGAACATGACAGGAGGTCGGTCAAATAATAATAAACGTGTTCC
CGTCAAACCATTCAAAAATGTTCAACATGAGAATATTGGGAAAGGATCTG
ACAAAAAACATCTGCCCAAACGTTCTTCCACAAAATGCGATGGCAAAAAT
ATCATCGCCGAGACGGTCAATAATGCGAAAGCagctaatttttcaaaaaa
caatccAGCCAAGAAGAAGTCAATTAATAGTGACAACAACACTAACACCA
CCGCAGTGAAAATAGAACACCCTGCAATAAAACAGGCTGTGAAGCCAGAA
GCCGAACTCCAAAAACCGAACAGTGAAGTGAAGGGTGATCCACAACCTAC
ACCTCAACAGTCTACCTTGGAGAAGCGCGGTCCAAGCTACGCCGATATGG
CTAAAAAACCAGCTGTCATTAAACCAGCACCGCCTACTACGAAAAAAGTG
GATGAACCTTCAAAAGATCTTGTGAAAAAGGGATCTCAGAAGAAAACAAC
TAAAACCTCTAAGAAAGTATCATATAAAGATGTTAGATTGGTCAAGAATC
CatccaaaacaacaaaagaaggTTCCCGTGTATTTAGCAAAAACACATCA
GACAAGCATCTACCTGCTAACAGTGTTGGTGCCAAGGCTGCATTTTTTGA
TGGGAAGAACAAGACAAACGGCCAatataaacaacaaaaaatatcaacaa
aaaatgGACGACCTCAAAACTATCCAAAAATCGATGCGGCTTCTTCAACt
aagcaacaaagaaaaagaggCAATCAGGCTTCAACGAGTGATTtgccaaa
aaaggtaaaattgAGTGATGGAAAGTTTGCTATAAAATCAAAGGAGACAG
AAAATTTTCAACGTTCAAGGACTAATGGAAAAGTCACATGTGTGAAAATA
GATAGTGACAACCAGCTCCCGAGTGAACAAGAACTCTTTTCTTCATGTTC
AACTCGTGAAGTTATTGTCAAACGAGAAGTATTTGAATCCACACAACAAG
TTGACCAACAACCTAAAAATATCGTACAAACAAACAAGGTTACTGAATAC
CAAGATGCTTCACCTGAGGCCCCAAACAAGGTTACTGACCACCAAGAAGC
TTCACCCGAAGCACCAAACAAGGTTATTGACCACCAAGATGCTTCACCTG
AGGCACCGAACAAGGTTACTGACCACCAAGATGCTTCACCTGAGGCACCG
AACAAGGTTACTGACCGCCAAGATGCTTCACCTGAGGCACCGAACAAGGT
TCCTGACCACCAAGATGCTACAACTGAGGCACCGAACAAG Run BLAST on NCBI transcript from alignment at scaffold_167:1514184..1518572- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050119 ID=TCONS_00050119|Name=TCONS_00050119|organism=Clytia hemisphaerica|type=transcript|length=4389bp|location=Sequence derived from alignment at scaffold_167:1514184..1518572- (Clytia hemisphaerica)
CAGAAAGATAGCTTCATTTCTGAAGTCAATTTGGATCCGAAGAGCACGCT
CTTAGTAAATTTCAATATATTTTTTTGGAATTTTGTTATATTTTATTCAA
TTTATTCATTATTGTTCAAATCATCTCATCAATTCATCGATAGTTGGATC
TACCAAGATGATGGAACCTTCTGATCAGGCGGATTTAACCGCATCAAAGT
CATTCTCTAAAGAGGAAGTAGAGCCACGGCTCCACAACGAACAGACCGCA
ACTTCACTTAACCGCAATGGTTCAAACACAACCCAGGATCAAATGGGTGA
AATGGAAAAGGCTTTAAGCCAACACAATCAACTTTCTTTGAACCAAGAAG
AAGGAAACAAGGTACTTTGAACATTTTTTCTCACTTTTCAATAAAAGTTC
TCATAAAACACTGGCGGATGGCTAGGCAGCCTTTCTGAATCATTATACAA
TTATGATTTGACTCTAAGAGACGGATCTTCTAGGATTGTTTCTGCTTTCT
GAATGATTTGATGGCATTTATGTCGGGCTGATATTCAAATCAACCATTAA
CAGTCATTGTACGTTAGCAAACCTGCTTTAGATGTCTGTCTGATCTTTTG
ACCTCTTTTTCGCCTCTTAGTCCTTTTAAAGTGTAAGGTTTTTCAACCTT
CTTCCTATTACACCCTCCTCTTAGCCTCTATTTATAGTCTAATCTCAGCC
TGTATTCAGGAAAAAAGGTTGGCTTGAGTACAGTTTATTCTCCAACGTTT
CCAGTTTTAAATGTTTGATAGGTTAGTAGTAGCCTAATCAACTGTAGCCT
AAATTTTCCTTCACTTTAAGGGGATACTATTATTTACACGGGTCCAAAAG
CACGAAAAACTTTCAGAACTTTCAAATTAGATACTTACATCAAAGAGCTA
CAAAGTATAATCAAACTGTGTAAGTGGGATCCGTGAGAGTGACATTTTCT
AACATCGCAATCAAAAGTCTTTCGTACCCACGAAATAACTTTAAAGATTT
TCTGTTTGTTGACTTTCTCAAATGTCAAACACCGACTATTTCAATTTCGA
TTGATTCAAGTCTTTTCAAAAACAAAAACAAAACATTCGAATCTTGATCA
AAACATTCGAAAGCGCATTCGTCAATATGCAATGTCTTCTTTTTTTTTAA
TCGAACGCAAGAGAATATTCCACCTCCACGTGATGTCTTTTGACCAATGA
AATCACTAGAATCTTACTGATGCGGGATAATTAAATTTACTCTGCTTTTG
TCTCCTTTTTAGAGAGACTTTTATCGTCCGTTCCCACCAAACACTAACCT
TTTGCTCCTCCTCAGAATCGAAAATGTCATTAATTTAGTCACCTTGCCAG
TACGTCTCTCGGAAACTTCATTAAATAACTTGTAAGGTGTTTCAAAAAAA
TTTGATCACCTTTCCTTTATCATGAAGTAGCTGAAGTAGGTTACCAGCAT
GATANTTTTCCAAAAAAATTTGATCACCTTTCCTTTATCATGAAGTAGCT
GAAGTAGGTTACCAGCATGATACCCTAGCGTAATTAAACCCAATGCCCTA
TTTTGATATAATTACCCCTCCCATTTAATTCGGGTGCCTCTCTACCTATA
CATGCACCTACTTATTTGAGAAGTTCCTTACAATTAAGTTCAAATATATT
GGAAAATTTTGGGTAAAGTTTGGGCGAGAATTACGATTTCAGTACTTTTA
TAGGAGCTCATTAGGAGCTCATTGGCTTCTAGTCTATATTCTCAGTCTTC
TTTGAACAATTTTGTATCATCCTAAAGTCCAGGTTTCATGTTAAAACTCA
GAGTTAAAAATTTACATCTTTGCAGGAAATTTCCTTTTTTATCAAATATC
ATTATTATGACTTTGATTGCACTTTGATTTACTTTTCCAATTAAAGTACC
TCTAACATTGGCATATCATTGGACTAATGAAATCGTTCCAAATCCCTTTT
AAAGTTAGTGAGCTTATTTGAAATTCTACAGTATATATAATCTTTATTTT
TAAATTTCAGACATCCAATGTATCCTTATTGCAAGAGGATGACAGAACGC
CAACCGCTCAGCAGGTTTATGATATGGTTCATAGCGCAGACAACATTCAC
ATCTCATCAACCGACGGTAAGAAGGGGCGCTTGGTCAAACGCTCACTTAA
GAAGAAGGCCTCTACAGCAGGAGGGTCTGCGTCGGCGACAAGCACTTTAT
CAAAACCAACCGATTTGGCAAACTCCAACCAGTCTCCGGACTCTGCTGCT
TTAACTTGTTTATCTCAATCAAACGGAGAATCCGTAGACGCTTCAAATAA
TTGCAATGCTGAACGTACTTCTTCCGTGGATGATACTGTTAATGGACAGC
AAAAGAAGAAGGGAAACAGTGGACACAACAAAAAATCCTCACCGTCGAAT
AGTGTCGAAGAAATTAACAATGTAATTGAGAAGATATCTTCCATGGATTG
TAAAGAATGTGAACAAGCTTGTGGAAGTGAAAATCCTCAACCCAAAGGAA
ATATCTTATCAAAGATAGCGTTTTTTGAAGAGCGGCGCACAGTTGAATTG
CCAGCTGTTGACAGTGCATCACCAAGTGATAATACCATTGTTCCACAAGG
CCAACTAAAATCTCCAAACGCCATTAAAAGTCATTTCACTGAGACTCCAA
AGGATTCTCAAAAACAACTTCTTATTCAGTCAAATGTTCCAGAAGTATCC
CCTGCAGATACTATGAACAAACCGGAACAGCTCCTTCCAAGTTCTATGGA
CAAGGTTCCGGTAACAGTACCCCAAACCAACAAAAGTACTTGCGAGGTTT
CCCAAGACACACCAGTGCAACCACAGCTCAAAAAACCTAGTTACGCTGAT
ATGGCTATGAAACCTGCTGTAAAACCCATCCTTCCTCCAAAGAAAGTGTC
TGTAGAAACATCAAAAGATGTAAAACAAAGAACATCTAAGACGAATACGG
AAAACAAAGCCTCCAGAAAAGGCTCATCAAAAGAGTCCAAGCTGGGTAGA
ACTAGATCTGACGCCCGCAAGAAGAGCTCTAATGAGTTTAAGACGTCGAG
TGAAGGCGTTTCCAAAAAGGCGGCGTATTTCAATGCTAAATTTGACGCCC
GTACCAAGAACATGACAGGAGGTCGGTCAAATAATAATAAACGTGTTCCC
GTCAAACCATTCAAAAATGTTCAACATGAGAATATTGGGAAAGGATCTGA
CAAAAAACATCTGCCCAAACGTTCTTCCACAAAATGCGATGGCAAAAATA
TCATCGCCGAGACGGTCAATAATGCGAAAGCAGCTAATTTTTCAAAAAAC
AATCCAGCCAAGAAGAAGTCAATTAATAGTGACAACAACACTAACACCAC
CGCAGTGAAAATAGAACACCCTGCAATAAAACAGGCTGTGAAGCCAGAAG
CCGAACTCCAAAAACCGAACAGTGAAGTGAAGGGTGATCCACAACCTACA
CCTCAACAGTCTACCTTGGAGAAGCGCGGTCCAAGCTACGCCGATATGGC
TAAAAAACCAGCTGTCATTAAACCAGCACCGCCTACTACGAAAAAAGTGG
ATGAACCTTCAAAAGATCTTGTGAAAAAGGGATCTCAGAAGAAAACAACT
AAAACCTCTAAGAAAGTATCATATAAAGATGTTAGATTGGTCAAGAATCC
ATCCAAAACAACAAAAGAAGGTTCCCGTGTATTTAGCAAAAACACATCAG
ACAAGCATCTACCTGCTAACAGTGTTGGTGCCAAGGCTGCATTTTTTGAT
GGGAAGAACAAGACAAACGGCCAATATAAACAACAAAAAATATCAACAAA
AAATGGACGACCTCAAAACTATCCAAAAATCGATGCGGCTTCTTCAACTA
AGCAACAAAGAAAAAGAGGCAATCAGGCTTCAACGAGTGATTTGCCAAAA
AAGGTAAAATTGAGTGATGGAAAGTTTGCTATAAAATCAAAGGAGACAGA
AAATTTTCAACGTTCAAGGACTAATGGAAAAGTCACATGTGTGAAAATAG
ATAGTGACAACCAGCTCCCGAGTGAACAAGAACTCTTTTCTTCATGTTCA
ACTCGTGAAGTTATTGTCAAACGAGAAGTATTTGAATCCACACAACAAGT
TGACCAACAACCTAAAAATATCGTACAAACAAACAAGGTTACTGAATACC
AAGATGCTTCACCTGAGGCCCCAAACAAGGTTACTGACCACCAAGAAGCT
TCACCCGAAGCACCAAACAAGGTTATTGACCACCAAGATGCTTCACCTGA
GGCACCGAACAAGGTTACTGACCACCAAGATGCTTCACCTGAGGCACCGA
ACAAGGTTACTGACCGCCAAGATGCTTCACCTGAGGCACCGAACAAGGTT
CCTGACCACCAAGATGCTACAACTGAGGCACCGAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050119-exon-scaffold_167-1575043694:1518212..1518572 | TCONS_00050119-exon-scaffold_167-1575043694:1518212..1518572 | Clytia hemisphaerica | exon |
| TCONS_00050119-exon-scaffold_167-1575043694:1514184..1516562 | TCONS_00050119-exon-scaffold_167-1575043694:1514184..1516562 | Clytia hemisphaerica | exon |
| TCONS_00050119-exon-scaffold_167-1510915933:1518212..1518572 | TCONS_00050119-exon-scaffold_167-1510915933:1518212..1518572 | Clytia hemisphaerica | exon |
| TCONS_00050119-exon-scaffold_167-1510915933:1514184..1516562 | TCONS_00050119-exon-scaffold_167-1510915933:1514184..1516562 | Clytia hemisphaerica | exon |
| TCONS_00050119-exon-scaffold_167-1491911889:1518212..1518572 | TCONS_00050119-exon-scaffold_167-1491911889:1518212..1518572 | Clytia hemisphaerica | exon |
| TCONS_00050119-exon-scaffold_167-1491911889:1514184..1516562 | TCONS_00050119-exon-scaffold_167-1491911889:1514184..1516562 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1514184..1518572 - |
Blast
The following BLAST results are available for this feature:
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