TCONS_00050126 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050126
Unique NameTCONS_00050126
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length824

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050126 ID=TCONS_00050126|Name=TCONS_00050126|organism=Clytia hemisphaerica|type=transcript|length=824bp
ttatattttgcgaatttcgcgaatccacaggtttttaaaattttcgcggg
gattatatttcgcgaatttcggaaaaactcgcgaaatataatccccgcca
gggggggtcatgcagttattatataaacactatgacaattactaccgtgg
tggtatataaaccaaaatttgggaaaacagttactccaNGGTACCATACT
TTTTGGGATGTCTGTGCTTGAAATAATTGAGAAGATCATCTTCAGAACAG
TTCATTTTTGGAAGATTGGCAATGAAGAGTTTTTTGGTTCTTTCATGGGC
TCCAGCATTATTGTTATTCTTTGGGACAGCTCTATTCACATCCAATTGTC
TACCTTTGAAGTTCAATTCCTCCCTTTTCAATAAGACCTCATCAACAAGA
TCTGATGTTTCAAAGGTCAGAAATCCAAAATGACTCTTCTTATCAGTGtc
ttttttaataataacaGTGTCTGTAACAGATCCGCCACACTTTTCTTCAA
AGTATTGTTTTAGTTCATCTTCAGTACTTTCTGTTGAAATTCCaccaaca
aaaacttttttcatttccTCTTCATCAAGAATAGGGTCTCTAATAAATTC
TGTGTTTTCTTCAAAGTATTGTTTTAGTTCATCTTCAGTACTTTCTGTTG
AAATTCCaccaacaaaaacttttttcatttccTCTTCATCAAGAATAGGG
TCTCTAATAAATTCTGTGATTTCTTCTTCCTCAGTTTCTGGCTTTTCCTC
TTCTGTTGATTCAACCTTTTCAGTGGTTGGTTCTTCAGTTTGTGGGACTT
GTTCTTCTGTATCAGCCATTCtat
Run BLAST on NCBI

transcript from alignment at scaffold_167:1744868..1746239-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050126 ID=TCONS_00050126|Name=TCONS_00050126|organism=Clytia hemisphaerica|type=transcript|length=1372bp|location=Sequence derived from alignment at scaffold_167:1744868..1746239- (Clytia hemisphaerica)
TTATATTTTGCGAATTTCGCGAATCCACAGGTTTTTAAAATTTTCGCGGG
GATTATATTTCGCGAATTTCGGAAAAACTCGCGAAATATAATCCCCGCCA
GGGGGGGTCATGCAGTTATTATATAAACACTATGACAATTACTACCGTGG
TGGTATATAAACCAAAATTTGGGAAAACAGTTACTCCANGGTACCATACT
TTTTGGGATGTCTGTGCTTGAAATAATTGAGAAGATCATCTTCAGAACAG
TTCATTTTTGGAAGATTGGCAATGAAGAGTTTTTTGGTTCTTTCATGGGC
TCCAGCATTATTGTTATTCTTTGGGACAGCTCTATTCACATCCAATTGTC
TACCTTTGAAGTTCAATTCCTCCCTTTTCAATAAGACCTCATCAACAAGA
TCTGATGTTTCAAAGGTCAGAAATCCAAAATGACTCTTCTTATCAGTGTC
TTTTTTAATAATAACAGTGTCTGTAACAGATCCGCCACACTTTTCTTCAA
AGTATTGTTTTAGTTCATCTTCAGTACTTTCTGTTGAAATTCCACCAACA
AAAACTTTTTTCATTTCCTCTTCATCAAGAATAGGGTCTCTAATAAATTC
TGTGATTTCTTCTTCCTCAGNAGGTTTTTGAAAATTCCGGAAGCAAAAAA
ATTCAAATCATTTTTTTCAAAAGTAAAAAAAAAATCAAATTTTTTTCTTC
AATCAAGGCATGAAAGATATTTTAACAAACTTGGAAAATGATTGAGATAT
TTAACTCTTGAACGGCCGTTAATAAGACGTACCCAGCAAAATGGTATCAA
AAATGAGGAATTCAGTGAAAAAATTGCCAAATTTGGCATTTTTGGGGGTG
GTATACACCAATTTTGAGGGTAAAATCAGTTAGTACANTTGAGAAGATCA
TCTTCAGAACAGTTCATTTTTGGAAGATTGGCAATGAAGAGTTTTTTGGT
TCTTTCATGGGCTCCAGCATTATTGTTATTCTTTGGGACAGCTCTATTCA
CATCCAATTGTCTACCTTTGAAGTTCAATTCCTCCCTTTTCAATAAGACC
TCATCAACAAGATCTGATGTTTCAAAGGTCAGAAATCCAAAATGACTCTT
CTTATCAGTGTCTTTTTTAATAATAACAGTGTCTGTAACAGATCCGCCAC
ACTTTTCTTCAAAGTATTGTTTTAGTTCATCTTCAGTACTTTCTGTTGAA
ATTCCACCAACAAAAACTTTTTTCATTTCCTCTTCATCAAGAATAGGGTC
TCTAATAAATTCTGTGATTTCTTCTTCCTCAGTTTCTGGCTTTTCCTCTT
CTGTTGATTCAACCTTTTCAGTGGTTGGTTCTTCAGTTTGTGGGACTTGT
TCTTCTGTATCAGCCATTCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031733XLOC_031733Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050126-exon-scaffold_167-1575043694:1745636..1746239TCONS_00050126-exon-scaffold_167-1575043694:1745636..1746239Clytia hemisphaericaexon
TCONS_00050126-exon-scaffold_167-1575043694:1744868..1745087TCONS_00050126-exon-scaffold_167-1575043694:1744868..1745087Clytia hemisphaericaexon
TCONS_00050126-exon-scaffold_167-1510915933:1745636..1746239TCONS_00050126-exon-scaffold_167-1510915933:1745636..1746239Clytia hemisphaericaexon
TCONS_00050126-exon-scaffold_167-1510915933:1744868..1745087TCONS_00050126-exon-scaffold_167-1510915933:1744868..1745087Clytia hemisphaericaexon
TCONS_00050126-exon-scaffold_167-1491911889:1745636..1746239TCONS_00050126-exon-scaffold_167-1491911889:1745636..1746239Clytia hemisphaericaexon
TCONS_00050126-exon-scaffold_167-1491911889:1744868..1745087TCONS_00050126-exon-scaffold_167-1491911889:1744868..1745087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1744868..1746239 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
491.754	471.496	1176.98	1181.65	1472.75	1117.8	1077.46	1117.05	419.43	405.437	438.073	430.243	443.324	426.832	388.606	470.962	452.706	518.673	129.354	169.273	591.149	554.47	404.697	416.813	582.933	714.237	433.812	455.219	373.222	382.142
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050126 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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