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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050126 ID=TCONS_00050126|Name=TCONS_00050126|organism=Clytia hemisphaerica|type=transcript|length=824bp
ttatattttgcgaatttcgcgaatccacaggtttttaaaattttcgcggg
gattatatttcgcgaatttcggaaaaactcgcgaaatataatccccgcca
gggggggtcatgcagttattatataaacactatgacaattactaccgtgg
tggtatataaaccaaaatttgggaaaacagttactccaNGGTACCATACT
TTTTGGGATGTCTGTGCTTGAAATAATTGAGAAGATCATCTTCAGAACAG
TTCATTTTTGGAAGATTGGCAATGAAGAGTTTTTTGGTTCTTTCATGGGC
TCCAGCATTATTGTTATTCTTTGGGACAGCTCTATTCACATCCAATTGTC
TACCTTTGAAGTTCAATTCCTCCCTTTTCAATAAGACCTCATCAACAAGA
TCTGATGTTTCAAAGGTCAGAAATCCAAAATGACTCTTCTTATCAGTGtc
ttttttaataataacaGTGTCTGTAACAGATCCGCCACACTTTTCTTCAA
AGTATTGTTTTAGTTCATCTTCAGTACTTTCTGTTGAAATTCCaccaaca
aaaacttttttcatttccTCTTCATCAAGAATAGGGTCTCTAATAAATTC
TGTGTTTTCTTCAAAGTATTGTTTTAGTTCATCTTCAGTACTTTCTGTTG
AAATTCCaccaacaaaaacttttttcatttccTCTTCATCAAGAATAGGG
TCTCTAATAAATTCTGTGATTTCTTCTTCCTCAGTTTCTGGCTTTTCCTC
TTCTGTTGATTCAACCTTTTCAGTGGTTGGTTCTTCAGTTTGTGGGACTT
GTTCTTCTGTATCAGCCATTCtat Run BLAST on NCBI transcript from alignment at scaffold_167:1744868..1746239- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050126 ID=TCONS_00050126|Name=TCONS_00050126|organism=Clytia hemisphaerica|type=transcript|length=1372bp|location=Sequence derived from alignment at scaffold_167:1744868..1746239- (Clytia hemisphaerica)
TTATATTTTGCGAATTTCGCGAATCCACAGGTTTTTAAAATTTTCGCGGG
GATTATATTTCGCGAATTTCGGAAAAACTCGCGAAATATAATCCCCGCCA
GGGGGGGTCATGCAGTTATTATATAAACACTATGACAATTACTACCGTGG
TGGTATATAAACCAAAATTTGGGAAAACAGTTACTCCANGGTACCATACT
TTTTGGGATGTCTGTGCTTGAAATAATTGAGAAGATCATCTTCAGAACAG
TTCATTTTTGGAAGATTGGCAATGAAGAGTTTTTTGGTTCTTTCATGGGC
TCCAGCATTATTGTTATTCTTTGGGACAGCTCTATTCACATCCAATTGTC
TACCTTTGAAGTTCAATTCCTCCCTTTTCAATAAGACCTCATCAACAAGA
TCTGATGTTTCAAAGGTCAGAAATCCAAAATGACTCTTCTTATCAGTGTC
TTTTTTAATAATAACAGTGTCTGTAACAGATCCGCCACACTTTTCTTCAA
AGTATTGTTTTAGTTCATCTTCAGTACTTTCTGTTGAAATTCCACCAACA
AAAACTTTTTTCATTTCCTCTTCATCAAGAATAGGGTCTCTAATAAATTC
TGTGATTTCTTCTTCCTCAGNAGGTTTTTGAAAATTCCGGAAGCAAAAAA
ATTCAAATCATTTTTTTCAAAAGTAAAAAAAAAATCAAATTTTTTTCTTC
AATCAAGGCATGAAAGATATTTTAACAAACTTGGAAAATGATTGAGATAT
TTAACTCTTGAACGGCCGTTAATAAGACGTACCCAGCAAAATGGTATCAA
AAATGAGGAATTCAGTGAAAAAATTGCCAAATTTGGCATTTTTGGGGGTG
GTATACACCAATTTTGAGGGTAAAATCAGTTAGTACANTTGAGAAGATCA
TCTTCAGAACAGTTCATTTTTGGAAGATTGGCAATGAAGAGTTTTTTGGT
TCTTTCATGGGCTCCAGCATTATTGTTATTCTTTGGGACAGCTCTATTCA
CATCCAATTGTCTACCTTTGAAGTTCAATTCCTCCCTTTTCAATAAGACC
TCATCAACAAGATCTGATGTTTCAAAGGTCAGAAATCCAAAATGACTCTT
CTTATCAGTGTCTTTTTTAATAATAACAGTGTCTGTAACAGATCCGCCAC
ACTTTTCTTCAAAGTATTGTTTTAGTTCATCTTCAGTACTTTCTGTTGAA
ATTCCACCAACAAAAACTTTTTTCATTTCCTCTTCATCAAGAATAGGGTC
TCTAATAAATTCTGTGATTTCTTCTTCCTCAGTTTCTGGCTTTTCCTCTT
CTGTTGATTCAACCTTTTCAGTGGTTGGTTCTTCAGTTTGTGGGACTTGT
TCTTCTGTATCAGCCATTCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050126-exon-scaffold_167-1575043694:1745636..1746239 | TCONS_00050126-exon-scaffold_167-1575043694:1745636..1746239 | Clytia hemisphaerica | exon |
| TCONS_00050126-exon-scaffold_167-1575043694:1744868..1745087 | TCONS_00050126-exon-scaffold_167-1575043694:1744868..1745087 | Clytia hemisphaerica | exon |
| TCONS_00050126-exon-scaffold_167-1510915933:1745636..1746239 | TCONS_00050126-exon-scaffold_167-1510915933:1745636..1746239 | Clytia hemisphaerica | exon |
| TCONS_00050126-exon-scaffold_167-1510915933:1744868..1745087 | TCONS_00050126-exon-scaffold_167-1510915933:1744868..1745087 | Clytia hemisphaerica | exon |
| TCONS_00050126-exon-scaffold_167-1491911889:1745636..1746239 | TCONS_00050126-exon-scaffold_167-1491911889:1745636..1746239 | Clytia hemisphaerica | exon |
| TCONS_00050126-exon-scaffold_167-1491911889:1744868..1745087 | TCONS_00050126-exon-scaffold_167-1491911889:1744868..1745087 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1744868..1746239 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000504 | RRM_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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