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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050130 ID=TCONS_00050130|Name=TCONS_00050130|organism=Clytia hemisphaerica|type=transcript|length=1620bp
CTCCCTATAAACTTTAACTCAGTTCTGGCTGCCTGGTTTTGCCATTCTTC
TGCATTCATGAGATTTCCACTCTCCCACTTCATCCAAGTGATTGTAGGTA
GTTCAAAAGTATGACTCTTAGTTTATTGAGCTTAGACGATCTTAATTCCC
GAGAAGAGAGTTGGGATTTCCAGAAAGATCTCACTTGCTCATAGTATTTC
ACAGAACCAAAATTCGTTTCTTTAAAAGCCACACTTCAAACGATCAAAAC
AAACCAAGAAAAATCGATATCGAAGACTTTTTTCGCCTTCCATCTCAACT
TAACACCACCCTGTGCCAGATGTTTTTATGTAGAATTTTCATAGAATGAC
ACATAAACTTACTCATGAGACAGgCGATATCTTCGAAGGCACCTTTAACA
AGCAAGGACTCAAACATGGTGTTGGACGTTTAAAGTTTGCTGATGGAACC
TATTTCGAAGGCTTTTTCAAGGATGGACTATTCAATGGATTTGGAACTCT
AACATTATCAGACGGAACAAAATATGAAGGTCAATTTGAAAATGGTAAAT
ATAATGGCTATGGGACATACATAAGATCAGATGGGATATGCTATGAAGGA
TCTTGGGCGCGTGTACGGTAATGGTAGAATTACACACATCGATGCAGCAA
CAAAAAGTGAAGGTGTTTTCGAAGGCAATCGTTTGGTTAGAAGAGAAAAT
TCACAAGAAGCTGTAGAACTAGCGAAAAAAGCAAAAGAACAAGCATCTAG
AATGAAATTGAATAAAAGTAAAGCCAAAAGTCTCCCCCATTAATTTGAGT
TTGCtggatttcaatttcaatttttaaaagtttttaacttATTAAGCTTA
TTTAGCTCTTGAAAATTCTTTAGATTACTGTTTCCAAAAGACATTAGGCT
ATTGCAAAAAACGATTGTCCAATGTTTGAACTGCTCGCAGAGCCATGGGG
AAGATTTTACTGGAGTGGTAGGAAagcaattttttgaatttatgaCGAGT
TTCTTTAGCGAGAGGAGGCTGCATATCGTTTACTTTTTTTATGAACTACA
ATCCATcaacaatttaatttttgtaaatatactTTAGAGAATTTAGGCAG
TTATTTTTAAATTATGATAGGCGAAGTTTATTTGTTAACGTTGGTATATA
TGTGTTatttaaataagaaataaaatttaCAGTGCGaccaaaatatacaa
aaaccttcaataaataaaaatacaaaaaagaatTATATATAAAACTTAAC
ATTATTACCTTACTCTTGTGTGCTTACTTGTAAGGGGGGGTTGGGTGGTC
CagataaaaatcaagaaaataagGGGGGTCATAAATTAAGTGCTATTGAC
CTGATTTTGCtgaaaatccctaggaaaatgaaggtttttggccaattttg
gcacttcgtagcataaaggtcataaaatgggggggggtcattataaagtg
atataggggtgattttttttcaaaaattgcaaaatgacccACTTTACAAT
TAAGCCCACAAGAGTAGGTACATGGAATTTTTCTAATCTGTAGCTAATGC
AAATTATAGGTTGTCACTAGTAGCGTAggcaagaggggcgcaaaatttgt
gtaggagagcagatttttat Run BLAST on NCBI transcript from alignment at scaffold_167:1812610..1817166- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050130 ID=TCONS_00050130|Name=TCONS_00050130|organism=Clytia hemisphaerica|type=transcript|length=4557bp|location=Sequence derived from alignment at scaffold_167:1812610..1817166- (Clytia hemisphaerica)
CTCCCTATAAACTTTAACTCAGTTCTGGCTGCCTGGTTTTGCCATTCTTC
TGCATTCATGAGATTTCCACTCTCCCACTTCATCCAAGTGATTGTAGGTA
GTTCAAAAGTATGACTCTTAGTTTATTGAGCTTAGACGATCTTAATTCCC
GAGAAGAGAGTTGGGATTTCCAGAAAGATCTCACTTGCTCATAGTATTTC
ACAGAACCAAAATTCGTTTCTTTAAAAGCCACACTTCAAACGATCAAAAC
AAACCAAGAAAAATCGATATCGAAGACTTTTTTCGCCTTCCATCTCAACT
TAACACCACCCTGTGCCAGATGTTTTTATGTAGAATTTTCATAGAATGAC
ACATAAACTTACTCATGAGACAGGTATCCAACTATCAAATTTTATCACAG
GGAATGTCGTCTTTCTCTTCATTTCGCTTTTCTTGTCTTTTTAATTCCGT
GATTTGTTGTCATTTTTTGATTTCTTTTTCTACTTTTTAAAATTCAGGCG
ATATCTTCGAAGGCACCTTTAACAAGCAAGGACTCAAACATGGTGTTGGA
CGTTTAAAGTTTGCTGATGGAACCTATTTCGAAGGCTTTTTCAAGGATGG
ACTATTCAATGGATTTGGAACTCTAACATTATCAGACGGAACAAAATATG
AAGGTTTATAAATAATAAAATATAACAATTTTTTTTGGATTTGATTGAAT
ATAAGAATAATAATAATAGTATTTGTTTTTCGTCTTTACTTTTTTTTTGA
GAATAATCTGGCCCAGAAGAAAATTTTTTCAAGTATTACTACGAAGATAT
GGGCATGATATGGTCATACAATTTCGAAATGTTGAACGCATACAAAAGAA
AATTGATAAAGTACAACTTGATGTTGACTTTTTGGAGAAATGTTNAGAAG
TAGGGAGAGATTGTAATGTTTCAATTTTTCAACAGTTTACTACAAACCAT
GGGAATTTTGATCAACTTTATTTTGTCAACCATACACCATTGATGTTGAC
TTTTTGGAGAAATGTTTAAAGTTTGAAGTCATTCCAAAGTTTTTATTTTT
CAAACTTTCAAATCATCGTCTACGTAACAGCAAGACTTATCGGGAAATAC
AGTTGAGACTTTTACGTGAAGAGATTAACCACCACAAGAAAGAGTTGCGT
AATCTTCTTCCAAAACGAGATGAAATTATTGGATTCATTGAACAGAATGT
TATTTGGTATGATTTTAATGTCATTCGAACAAAATTGAGATCGATTTGCA
ACATTGAAATATCTGCGGTTCGAAAACGACATGAGAAAAAGTTTCGTGAT
CTTTCCAAGAATAGGATCGTTCAAGATACTTTTGACCCAGACAAACTGAT
TTATAACTTCACCGACCGAGTTCTTACTCAGGCTCAGACATCCGCTTTAA
TGAAAGAATTGAGATTTGGCATTCCTCCATTGAAAGCAGACACCTATGGC
GTTTTTACAGCGTTTGAATTATGTTACAAGGGCCTTAAATCTTTAAACAT
GAACACTGCTACTTACAGTCCAGACCGTTACAAGAATAAATTCGCTGAGT
TGGCTTATGCTTACTGTCAACGATATGATAAACGAACTGAAGTTAATCTA
ACTGACATTGAAATGAAAGGCTTAATTGAATTGAGTAAAGACAAAAGTAT
TGTCGTTGCAAAAGCTGATAAAGGGAAGAGCGTTGTTTTGTTACGGAAAT
CTGACTATGTCACTGAACTAGAGACTTTGTTGAATACGAAATACGTTCGC
TTTTGTCAATCAACTCCAAGGTATGAATTCTACATCTTGTCATATCGCAA
GCTTTGATGTCTCAAGTTTGTTTACGTCTATTCCTCTTGATGCAACCATA
ACCATAGCTTTGGATTACCTTTATGAAAACGCCACTACTGTCAGTGGTTT
ATCAAAGAAACGAATTCAAGACCCTTTTGGATATGGCAACTAAAGAAACT
AACTTCATTTTCAATGGTAAATGTTGACGGGGTTGCCATGGGTTCACCAT
TAGCACCTGTATTAGCTAATATATTCATGAGAAATTTCGAGGAAAAGGCT
TTCGAGATTTGTCCCGGTGATATTGAAAAACCATCCTTTTATCGACGTTA
TGTTGATGATAGTTTTCTATTGTTCAAAAATCAATCACACGTTACACCAT
TTTTTGATTATTTGAACACTCGCCATAAAAACATTGTGTTCACAAAAGAA
GAAGAATCGACATCAGAGGATAGTTTCCCCTTCCTTGATACAAAGATTGT
CAAAGAAGATGGTAAATTCTTAACAAGTACCTACTACAAACCTACTCATA
CCGGAGTTTATACAAATTGGTATAGTTTTACTCCAACGAAATACAAAATC
AATTTAATCAAGAATTTGCTAAGTAGGGCATGGAAGATTTGTTCCAACGA
ACGTCTATTTCTCAGTGACTGGGAAGTTATCAAAGGAACATTGGTTAAGA
ATAAGTATCCTGAAAAACTACTGATAGCAATGTGTAAGAATTTTGTACAA
AAAATGAAGTCGAGTGATGAAAATGAAAGTGTCGCCACTGTTGCAAAGAA
AGAAGTGAAACTGTATTTAACTTTTCATGGTAAATTATCTGATGTTCTTC
ATAAGCAGCTAATTTCGTTATTAGCTGAGACCTACCCACAAGTTGACCTA
AAGATCGTTTTCCGCACTACGTTTCGACTCTCAAATCTGTTTACTTTCAA
AGATACCTCTAAGGTTACGTTCATTTGTTGTGTACGGAGTGCACTGTACA
GATTGCGAGTCTAACTATATTGGGAAAACAAAACGACATATTGCGACACG
GTACAAGGAGCATCGAAATATTGAAAGACCAACTGCTGTAACGAGACATC
TTTTTAGAACTGGGCACGACGTGTCCCTAGAGAACATGAAAGTTTANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCTTTTTTGAATAAGTATATGTATGCGTTCAATTATGT
AAATTTTATGACCTATAATTGCTAGATGTGATTTTGAAATTTTGATTTAT
TAACACGTTTTTTTGCTTGTAAGCTAACATTTGCTTGTGATCATGATACA
AGAAGTATCGAAACGTCAAGGATGAAAAAAATTTTGTTTTTCGTCTTTAC
TTTTTTTTTGATGAAAGATAGTGTCGCGAAATGAAAGATAGTATTTATTT
CCGCTTTGGCGCGCCATATTCAACCCCCCCTAAAAAAAACAATTCCAAAT
GTTGTTGAACTCCATCGCATTATAAGCTCGAAACCTTTGAATCAAAGTTT
CTATCTGATTTTATAGGTCAATTTGAAAATGGTAAATATAATGGCTATGG
GACATACATAAGATCAGATGGGATATGCTATGAAGGATCTTGGGCGCGTG
TACGGTAATGGTAGAATTACACACATCGATGCAGCAACAAAAAGTGAAGG
TGTTTTCGAAGGCAATCGTTTGGTTAGAAGAGAAAATTCACAAGAAGCTG
TAGAACTAGCGAAAAAAGCAAAAGAACAAGCATCTAGAATGAAATTGAAT
AAAAGTAAAGCCAAAAGTCTCCCCCATTAATTTGAGTTTGCTGGATTTCA
ATTTCAATTTTTAAAAGTTTTTAACTTATTAAGCTTATTTAGCTCTTGAA
AATTCTTTAGATTACTGTTTCCAAAAGACATTAGGCTATTGCAAAAAACG
ATTGTCCAATGTTTGAACTGCTCGCAGAGCCATGGGGAAGATTTTACTGG
AGTGGTAGGAAAGCAATTTTTTGAATTTATGACGAGTTTCTTTAGCGAGA
GGAGGCTGCATATCGTTTACTTTTTTTATGAACTACAATCCATCAACAAT
TTAATTTTTGTAAATATACTTTAGAGAATTTAGGCAGTTATTTTTAAATT
ATGATAGGCGAAGTTTATTTGTTAACGTTGGTATATATGTGTTATTTAAA
TAAGAAATAAAATTTACAGTGCGACCAAAATATACAAAAACCTTCAATAA
ATAAAAATACAAAAAAGAATTATATATAAAACTTAACATTATTACCTTAC
TCTTGTGTGCTTACTTGTAAGGGGGGGTTGGGTGGTCCAGATAAAAATCA
AGAAAATAAGGGGGGTCATAAATTAAGTGCTATTGACCTGATTTTGCTGA
AAATCCCTAGGAAAATGAAGGTTTTTGGCCAATTTTGGCACTTCGTAGCA
TAAAGGTCATAAAATGGGGGGGGGTCATTATAAAGTGATATAGGGGTGAT
TTTTTTTCAAAAATTGCAAAATGACCCACTTTACAATTAAGCCCACAAGA
GTAGGTACATGGAATTTTTCTAATCTGTAGCTAATGCAAATTATAGGTTG
TCACTAGTAGCGTAGGCAAGAGGGGCGCAAAATTTGTGTAGGAGAGCAGA
TTTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050130-exon-scaffold_167-1575043694:1816794..1817166 | TCONS_00050130-exon-scaffold_167-1575043694:1816794..1817166 | Clytia hemisphaerica | exon |
| TCONS_00050130-exon-scaffold_167-1575043694:1816514..1816669 | TCONS_00050130-exon-scaffold_167-1575043694:1816514..1816669 | Clytia hemisphaerica | exon |
| TCONS_00050130-exon-scaffold_167-1575043694:1812610..1813700 | TCONS_00050130-exon-scaffold_167-1575043694:1812610..1813700 | Clytia hemisphaerica | exon |
| TCONS_00050130-exon-scaffold_167-1510915933:1816794..1817166 | TCONS_00050130-exon-scaffold_167-1510915933:1816794..1817166 | Clytia hemisphaerica | exon |
| TCONS_00050130-exon-scaffold_167-1510915933:1816514..1816669 | TCONS_00050130-exon-scaffold_167-1510915933:1816514..1816669 | Clytia hemisphaerica | exon |
| TCONS_00050130-exon-scaffold_167-1510915933:1812610..1813700 | TCONS_00050130-exon-scaffold_167-1510915933:1812610..1813700 | Clytia hemisphaerica | exon |
| TCONS_00050130-exon-scaffold_167-1491911889:1816794..1817166 | TCONS_00050130-exon-scaffold_167-1491911889:1816794..1817166 | Clytia hemisphaerica | exon |
| TCONS_00050130-exon-scaffold_167-1491911889:1816514..1816669 | TCONS_00050130-exon-scaffold_167-1491911889:1816514..1816669 | Clytia hemisphaerica | exon |
| TCONS_00050130-exon-scaffold_167-1491911889:1812610..1813700 | TCONS_00050130-exon-scaffold_167-1491911889:1812610..1813700 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1812610..1817166 - |
Blast
BLAST of TCONS_00050130 vs. Swiss-Prot (Human)
Match: MORN4 (MORN repeat-containing protein 4 OS=Homo sapiens GN=MORN4 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.711e-20 Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 1
Query: 358 LTHETGDIFEGTFNKQGLKHGVGRLKFADGTYFEGFFKDGLFNGFGTLTLSDGTKYEGQFENGKYNGYGTYIRSDGICYEGSWARVR 618
T+ +G+ + G + K+G +HG G+L FADG + G F++GLFNGFG LT SDG++YEG+F GK+NG G +IR D + +EG + R
Sbjct: 8 FTYSSGEEYRGEW-KEGRRHGFGQLMFADGGTYLGHFENGLFNGFGVLTFSDGSRYEGEFAQGKFNGVGVFIRYDNMTFEGEFKNGR 93 HSP 2 Score: 35.8094 bits (81), Expect = 1.711e-20 Identity = 20/53 (37.74%), Postives = 31/53 (58.49%), Query Frame = 2
Query: 605 GRVYGNGRITHIDAA---TKSEGVFEGNRLVRRENSQEAVELAKKAKEQASRM 754
GRV G G +T D + ++EG+FE N+L+RRE V+ A+ A + A +
Sbjct: 92 GRVDGFGLLTFPDGSHGIPRNEGLFENNKLLRREKCSAIVQRAQSASKSARNL 144
The following BLAST results are available for this feature:
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