TCONS_00050135 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050135
Unique NameTCONS_00050135
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length528

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050135 ID=TCONS_00050135|Name=TCONS_00050135|organism=Clytia hemisphaerica|type=transcript|length=528bp
gcatCGGACTCTGCAAAGTGACAAAGGCAAACATGACATTATTTTAAACT
GTTCAATTTCTAGGTGAGTTACATTCCAgttgaaaaatttagtttttctt
gTTCAGATTTTGAAACCCCTTCAATCCTTCTCgttgaaaatattataaaa
gGCCTCACCAACTTGCAGTTGTTAATTTAAGAAAGATTCACAGGAATGGT
TATTCACTAAGATTTACAGTAATGCCCGACATTGATGATATGgatgaatt
gcaaaaaaaatagtACTATGTCTTTTCTGCAACTGTCAAATTTGGCTATT
TTTAGATCTACTCGTTGAAgatgacattttgaatttcataattttgtgTT
GAGCACTGCTTTTGGAGTTTGGAAGCTTATTGGAGGGTGGCGCTTATATC
AAAGTTCATATTTTTAGATGCAGCGCTTATAAGTTTAATGGAAGAAATGC
GGTAATGATAGAAAACTTTAGCGCTGTGCTGTGAACAGACCTCTAGAAAT
TTCTTTTGCTTATGCTTATGCCATCGCA
Run BLAST on NCBI

transcript from alignment at scaffold_167:27100..27627

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050135 ID=TCONS_00050135|Name=TCONS_00050135|organism=Clytia hemisphaerica|type=transcript|length=528bp|location=Sequence derived from alignment at scaffold_167:27100..27627 (Clytia hemisphaerica)
TGCGATGGCATAAGCATAAGCAAAAGAAATTTCTAGAGGTCTGTTCACAG
CACAGCGCTAAAGTTTTCTATCATTACCGCATTTCTTCCATTAAACTTAT
AAGCGCTGCATCTAAAAATATGAACTTTGATATAAGCGCCACCCTCCAAT
AAGCTTCCAAACTCCAAAAGCAGTGCTCAAcacaaaattatgaaattcaa
aatgtcatcTTCAACGAGTAGATCTAAAAATAGCCAAATTTGACAGTTGC
AGAAAAGACATAGTactattttttttgcaattcatcCATATCATCAATGT
CGGGCATTACTGTAAATCTTAGTGAATAACCATTCCTGTGAATCTTTCTT
AAATTAACAACTGCAAGTTGGTGAGGCcttttataatattttcaacGAGA
AGGATTGAAGGGGTTTCAAAATCTGAAcaagaaaaactaaatttttcaac
TGGAATGTAACTCACCTAGAAATTGAACAGTTTAAAATAATGTCATGTTT
GCCTTTGTCACTTTGCAGAGTCCGatgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031740XLOC_031740Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050135-exon-scaffold_167-1491911889:27100..27627TCONS_00050135-exon-scaffold_167-1491911889:27100..27627Clytia hemisphaericaexon
TCONS_00050135-exon-scaffold_167-1510915933:27100..27627TCONS_00050135-exon-scaffold_167-1510915933:27100..27627Clytia hemisphaericaexon
TCONS_00050135-exon-scaffold_167-1575043694:27100..27627TCONS_00050135-exon-scaffold_167-1575043694:27100..27627Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:27100..27627 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.251848	0.862378	0	0.118516	0.142985	0	0.0937192	0.116086	0.225352	0.0740689	0	0	0	0	0	0.0855736	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050135 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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