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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050137 ID=TCONS_00050137|Name=TCONS_00050137|organism=Clytia hemisphaerica|type=transcript|length=2450bp
ATGATGATTCAAAGAGTGATGAGAGTGAGAATGATGGTGAAAGTGAGGAT
AATTTCCTTGAAGATGGAGGTGAGGTCGATGAAAGCAAAGTAATTATACT
GAGCAGAGTCTGGTCGTCATTCAGTTGACCTGTCAAAGAGGATGAAATTG
TTGGGAAATGGTTTGCTGTTATTTTCAATGGCAAAAGGTTGGCCGTGAAG
GATGGCCCAACAAACGACACAACGGACCAGGTCTTAGGGAACTGGGTCCG
TAACCTGGGCCTACAACCACCTAGGTTCACCTAGGTCTTttcaaaagaga
aaatattcttccaactaaaaaataaatattgtgCATTCTTATTTTTCTCC
TGTTTctcttgaaattatttttttccctatgacataaaataaaaaacttt
ttttagatttcttggGAACGGTAGTTGAATCcctctttttctaatttttt
ttctatgacGTCGAAAAGCATTTGAAAGTTAACCACCTAGTTTTTAGTCT
ATTTTGCGCGGGTAAATAATGCCAACGATCTCTACTAATTTAACGAGTTG
AGCTTTTAATCACTGGATAGGTCTATCTAGCAACTTTGTTCAAGTTCAGT
TTTTCTTCACACCGAAAGTCCCTTAATTATCATGCACTACCCTTaaacaa
aatttatcatttaatcGCTTTTTTTTATGTTGCAAATGTGGtccaaaatc
gcttaaaaagtgAAGTATGGCAAAAACTTTtgggtaaaaaaaaaacacgg
gaattcttaaaatttacaacaaattcgaaattattttgtgaaaaaatttg
gCTGGAAAGTGTGCCGTATTTCGGTAGGAAATACTGCCTAGGTCACGTGA
TAtttcaatagaatttcagcacttGGTCAATCAGGAGCTTCGTGGAGCTT
CGATGCCACAAATAATGTGATAATCAGTCAATACATTAATCCAACCAGTT
TTACAAGCTTCAAAGAAGATTAACAACCAGATAATCCAACAATATTTCCA
ACAAGATTGATTTTTCATACCAGATCCCCCTCAAACGAACATCTAAACTC
CAGGTGTGACAAGGCTGTAAATTGTAAATAAAGTGTCCTTGCCTTCACTT
CACTTGTactaaatttgaatttgaaaataatcattttaaCGGCTGTTGGA
AAATTTAATGTGTTCTTTCATGGGCTCCTGTATTTTTCAAACAGATACAA
GGCCGTTGAGACAGTGCATGAATCTTTTGCGTAGATATTTAGGTGAGTTA
TACTATTATTCTCTTGAGTGTGTGCATGAGGAAAGACATTTTACTTATAG
ActattatcggcgatccaaaagatatctgcaatctgattggtttaaaaaG
AGTACTGAGCTgttattctcaaattttgccaagGGGTTGATTCCAGTATG
AAAGAGGGATTTCGTGCAGTTTTAAGACAAAAAATCTTATTGTCTTTCGA
AATTGGCTATGACTATCTTACTATacaaatgagtttatgaaaaatgtgtg
tAACGCAAGATGGTAGCTGAGCTGTTAAATTTTGCCAGGGGGTTGATTCC
AGTATGAAAGAGGGATTTCGTGCAGTTTTAAGACAAAAAATCTTATTGTC
TTTCGAAAAAGTAGTTGATGATACGTCGTGGTTTTAATTTTGtgcttaaa
atttcatttttagtgcAGTGTAAATGTGCCAATAGTCATTAACATTGTGC
ACAAAGGCGTACAAGCATGATTTGCACAGttgtagtttaggggtcaaaga
tggatttaaatctcagacccaaaaaattggcatctgtttgtgtattttac
agaccagaacaggTTCCAAGgctaaaatgaatttttcttctccaaagtat
gtcatgttacataccgttggaaagcatttttcatctgaaaatgaagccaa
aaaaagatattgcgaaatgttgtttgaaaaatgacgtaattgctgacgtc
agcaaaaactcCAGGACAACCCAAAGACGTTtattttttgcgaaatttaa
taatgaatcaaaagatttgataccctgtttttcgtctaatgaagcaattt
taaagtttgatataccaaaatttaagttaaaccctcctttaaacgatttc
gaaaaaaatcaagttaatatattttttcacttttttcgcaattttgaatc
aaacagggggaagttttttcagagacagCCGGTAGTTCCCGTTTTCGATT
AAATTGAAATCGCCTTCAAACTTCCggaagaaactctcataattgACAGT
TTACTGTTTACTAAGCTAATTTTATGGTGAAGATTTCAAGTCATATTCTC
ACATTCAATTTGAAGCATAGAAAGGTATTTTATTATATTCACGAGAAATC
TTCCAACTACTCGATATACTCCCGTGGTTGATGAAAACTAATTCGAATTC
CCCTTAAAAGTAAAGTTAGAGAGCATCAGCAAtaccatctttatcatcct Run BLAST on NCBI transcript from alignment at scaffold_167:36938..39387 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050137 ID=TCONS_00050137|Name=TCONS_00050137|organism=Clytia hemisphaerica|type=transcript|length=2450bp|location=Sequence derived from alignment at scaffold_167:36938..39387 (Clytia hemisphaerica)
aggatgataaagatggtaTTGCTGATGCTCTCTAACTTTACTTTTAAGGG
GAATTCGAATTAGTTTTCATCAACCACGGGAGTATATCGAGTAGTTGGAA
GATTTCTCGTGAATATAATAAAATACCTTTCTATGCTTCAAATTGAATGT
GAGAATATGACTTGAAATCTTCACCATAAAATTAGCTTAGTAAACAGTAA
ACTGTcaattatgagagtttcttccGGAAGTTTGAAGGCGATTTCAATTT
AATCGAAAACGGGAACTACCGGctgtctctgaaaaaacttccccctgttt
gattcaaaattgcgaaaaaagtgaaaaaatatattaacttgatttttttc
gaaatcgtttaaaggagggtttaacttaaattttggtatatcaaacttta
aaattgcttcattagacgaaaaacagggtatcaaatcttttgattcatta
ttaaatttcgcaaaaaataAACGTCTTTGGGTTGTCCTGgagtttttgct
gacgtcagcaattacgtcatttttcaaacaacatttcgcaatatcttttt
ttggcttcattttcagatgaaaaatgctttccaacggtatgtaacatgac
atactttggagaagaaaaattcattttagcCTTGGAAcctgttctggtct
gtaaaatacacaaacagatgccaattttttgggtctgagatttaaatcca
tctttgacccctaaactacaaCTGTGCAAATCATGCTTGTACGCCTTTGT
GCACAATGTTAATGACTATTGGCACATTTACACTgcactaaaaatgaaat
tttaagcaCAAAATTAAAACCACGACGTATCATCAACTACTTTTTCGAAA
GACAATAAGATTTTTTGTCTTAAAACTGCACGAAATCCCTCTTTCATACT
GGAATCAACCCCCTGGCAAAATTTAACAGCTCAGCTACCATCTTGCGTTa
cacacatttttcataaactcatttgtATAGTAAGATAGTCATAGCCAATT
TCGAAAGACAATAAGATTTTTTGTCTTAAAACTGCACGAAATCCCTCTTT
CATACTGGAATCAACCCcttggcaaaatttgagaataacAGCTCAGTACT
CtttttaaaccaatcagattgcagatatcttttggatcgccgataatagT
CTATAAGTAAAATGTCTTTCCTCATGCACACACTCAAGAGAATAATAGTA
TAACTCACCTAAATATCTACGCAAAAGATTCATGCACTGTCTCAACGGCC
TTGTATCTGTTTGAAAAATACAGGAGCCCATGAAAGAACACATTAAATTT
TCCAACAGCCGttaaaatgattattttcaaattcaaatttagtACAAGTG
AAGTGAAGGCAAGGACACTTTATTTACAATTTACAGCCTTGTCACACCTG
GAGTTTAGATGTTCGTTTGAGGGGGATCTGGTATGAAAAATCAATCTTGT
TGGAAATATTGTTGGATTATCTGGTTGTTAATCTTCTTTGAAGCTTGTAA
AACTGGTTGGATTAATGTATTGACTGATTATCACATTATTTGTGGCATCG
AAGCTCCACGAAGCTCCTGATTGACCaagtgctgaaattctattgaaaTA
TCACGTGACCTAGGCAGTATTTCCTACCGAAATACGGCACACTTTCCAGc
caaattttttcacaaaataatttcgaatttgttgtaaattttaagaattc
ccgtgttttttttttacccaAAAGTTTTTGCCATACTTcactttttaagc
gattttggaCCACATTTGCAACATAAAAAAAAGCgattaaatgataaatt
ttgtttAAGGGTAGTGCATGATAATTAAGGGACTTTCGGTGTGAAGAAAA
ACTGAACTTGAACAAAGTTGCTAGATAGACCTATCCAGTGATTAAAAGCT
CAACTCGTTAAATTAGTAGAGATCGTTGGCATTATTTACCCGCGCAAAAT
AGACTAAAAACTAGGTGGTTAACTTTCAAATGCTTTTCGACgtcatagaa
aaaaaattagaaaaagaggGATTCAACTACCGTTCccaagaaatctaaaa
aaagttttttattttatgtcatagggaaaaaaataatttcaagagAAACA
GGAGAAAAATAAGAATGcacaatatttattttttagttggaagaatattt
tctcttttgaaAAGACCTAGGTGAACCTAGGTGGTTGTAGGCCCAGGTTA
CGGACCCAGTTCCCTAAGACCTGGTCCGTTGTGTCGTTTGTTGGGCCATC
CTTCACGGCCAACCTTTTGCCATTGAAAATAACAGCAAACCATTTCCCAA
CAATTTCATCCTCTTTGACAGGTCAACTGAATGACGACCAGACTCTGCTC
AGTATAATTACTTTGCTTTCATCGACCTCACCTCCATCTTCAAGGAAATT
ATCCTCACTTTCACCATCATTCTCACTCTCATCACTCTTTGAATCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050137-exon-scaffold_167-1491911889:36938..39387 | TCONS_00050137-exon-scaffold_167-1491911889:36938..39387 | Clytia hemisphaerica | exon |
| TCONS_00050137-exon-scaffold_167-1510915933:36938..39387 | TCONS_00050137-exon-scaffold_167-1510915933:36938..39387 | Clytia hemisphaerica | exon |
| TCONS_00050137-exon-scaffold_167-1575043694:36938..39387 | TCONS_00050137-exon-scaffold_167-1575043694:36938..39387 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:36938..39387 . |
Blast
The following BLAST results are available for this feature:
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