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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050139 ID=TCONS_00050139|Name=TCONS_00050139|organism=Clytia hemisphaerica|type=transcript|length=2902bp
gtgcaaaaaatcagaaaaaactaatgagccaatcctgagaaaagctggta
acagacggacggacgaacggacatgggttaatttatagaacctccaccgg
gttacccggaggtaggtccaaaaaaccccAGCTTTTTCggtttttacccc
ctgattttaattttttcaatttttttttctcactcaGATCACAGAAGGTC
ACGAGGGTAACATAAGTGCCAAATATCAAAAGCTAACTCCTTCTGGTTGC
TGAGATTTTTCCAGTACCATCATACAAAGTTTCAACAATATATCATTTat
actttttgagatatttcaattttaatattttttgacattttcaaaaagtt
tgttaacgaccaccttaatATAATCTTTATCATTTTAGTGCTCATCCGGG
TGATGTCCATGGATCAAGTTGGGACCTTGGTTTGGCCAAACGGGCGATCA
GCGGGTGCAAGGATCCCAACGAATTTATTCGTATATACGAAACGTTTGGT
GTCGAAGAGGCGAAAAATACATTCTGAAACAAATTAATCTTCGACATGAA
ACAGAGCTGCCACATTcattattggttgaaaaaatcaaaagaacatTCCA
CACGGACAAAGATCCGAGAGTGTTCCTCAAGATCCATGAAATCTTTGGGC
CTGAGGTTGCAAAAGTGTATTTGTTAGCGCATGAAGAAAGCGACGACACG
AGTGACTCGTCACACGACGACGACGGCTATTGGACGGTACATCAACTCCG
TCCAAAGTATGACGTTGAGTCAGACACCAAGTCGTTTCAATCTAGCGAAC
ATACCAGTATCTACTCAAGAAACCATTCCCGTTCTTCGAATGGTATCCCT
AGCGAACAGCGCGGCCGCTATAACTGCGTGCGTAAGAGGAATTGGTGCTT
AGCACGCAAGCTGAAGAGGGAATATCAATTCGAAGACACGTCAAGTGAAA
GCGACGAGGACAATCTTGATCGTCAATCTTATCGGCAACATCGGAAAGGG
AGCCGAAGCACCCGATCCTTCCTTTCATTGGTACGCGCAAGCCGTAAAAG
TCGTTACAGTACATCGTACGGCAGTCTGGGCAGCTCAGCAACTTCATCTA
CAAGGAGCGGTTTCGAGAATCCCAGTCTTTACTCTCGGGCATCCTATAGA
TCGGAACAAACAACTTCTCGAGAGAACTCGTCAGATTCCCGCAAATCTAT
TGGATCAAGTTCGAGCAGTAACAAAACCTCATTCAGTACAAATGAATCAT
TCCGGTCGCTTAACATGTATAGACAATACATGGAGTTTACCAGTACACAT
AACAGCTCCTTCCAAAGTGAACGGTTGAGTGAAAGGTATTGTATAgagat
ttttcatgtttttgctaagttacgtaattccttccattatggaagcaaac
gttcgaatcagTGATGGAACCCTTAAGCAAATTGAACGTTTGTTTTGACA
ACGGCGAAAGCTACGTAACTTATGCCCGATTCATAATAGACTACTGCTGC
GGGGAGAGGTAAAAAGAAATACACTAAGTACCCCATGCATATATAGGGAA
CTTTGTTTAAGCTTCAATATCTTAAAAATGCAAATGGTCATAGGTATAAC
CaacaaaattgcatttttttgctcaagAGTTATTCAAAATACTCAACCTC
AACAGCCACCAACAATGAAGACGGAATTGTAGAAACAGATGAATCCGATG
AATTCACCGACCGTGAGCCAACTGTACAAGAGCTCGAAACGTTCAATTGT
TACATAGCGAATAAACACGGTCGGAATCGCTATGCGATTAACCCCAGGTA
ACTATTTTTATGACAGTACAAAATGAAGATGTGTTTTAGTAAAGTTGATA
CTAAAGGACTTGTTTTGTAAACGATTGAACCATCTTTCTTAGTTCACAAT
AACTAAAAAAGGACAATATTATGAGATAAGAACTTCTCTATGTTCGTCCA
GGAAGAATTTTGAATTGAATACCCGCTAAATACTACTTTTATCTATGGAG
CGTATTGGGGTTTTGCACACAGAGCCACTTGCATCACTTTGCATCATTTT
ACTAATGGTCGTGATAAAATCGTGATCGTTATACCTTTaatgagcgctat
cagaatcataaaacaGCGAACTAAGGGGCTGGGTTTGAGTTTGAGGGTTT
TGTTCGAATGTCCAATTTGTTTCCACGTCCGTTAATTTATGccccgaatt
tggaaatttaaaattaaagatcCTCTTTTTGATCCTGTAAACTTCTTTAA
TCATCCTTTCTTTATTCGTTTTTAGCAAGCCGCTAAAAGTCCAAACTTAT
CTCATGGCCAGCGATTCTAGGGCCGACGCGGAACAGTTATTCGTGCCAAG
AAGATCAGCGGTCAAGAAATTCGGAAGCTGTAGTGTGAAGGAGAGTGACA
AAGCTATTTCAGTTTATTCATCGCTCTCCTCTCGCAGTTCTTTAAAGAGT
TGTTCGATTCGGGACTTCATGAACCGTGACACGTGCGAAAAAGGAGCAGC
TGATAGTCCGATAACGGTTTCATCAGATTCAGGTGTGTCAGATTCGACCG
TGTCATCGGATTCGAGTGGGTCATCAGATTCGTACATTAACGATCACAAC
CAATATAGGCATTATGGCCAGTCTGAATCTTCTTTCACAAGAGAAGAGTA
TCAGGAGCGAGCGAATGCTCCTCACTTAACATATTTAAGAGGCAATTCTC
AGACAGGTCGGCATGGGCAATGTCATCTGACAGTAAAGAATAATCAACAT
CAGGGTCATCGGTAACAACTGATTATCACTCACTCAGCTCGTTAAGGAAA
CTAAGCTCTGAGCAATCGGCTTCGGCAATGTCATCTGACAGTTCCGACTC
ATATTACTCGATCCAATCGGGGATCATCGTATTCGCTCAAACTCAAAGGG
AT Run BLAST on NCBI protein sequence of TCONS_00050139-protein >TCONS_00050139-protein ID=TCONS_00050139-protein|Name=TCONS_00050139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MASDSRADAEQLFVPRRSAVKKFGSCSVKESDKAISVYSSLSSRSSLKSC
SIRDFMNRDTCEKGAADSPITVSSDSGVSDSTVSSDSSGSSDSYINDHNQ
YRHYGQSESSFTREEYQERANAPHLTYLRGNSQTGRHGQCHLTVKNNQHQ
GHR Run BLAST on NCBI transcript from alignment at scaffold_167:40875..43776 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050139 ID=TCONS_00050139|Name=TCONS_00050139|organism=Clytia hemisphaerica|type=transcript|length=2902bp|location=Sequence derived from alignment at scaffold_167:40875..43776 (Clytia hemisphaerica)
ATCCCTTTGAGTTTGAGCGAATACGATGATCCCCGATTGGATCGAGTAAT
ATGAGTCGGAACTGTCAGATGACATTGCCGAAGCCGATTGCTCAGAGCTT
AGTTTCCTTAACGAGCTGAGTGAGTGATAATCAGTTGTTACCGATGACCC
TGATGTTGATTATTCTTTACTGTCAGATGACATTGCCCATGCCGACCTGT
CTGAGAATTGCCTCTTAAATATGTTAAGTGAGGAGCATTCGCTCGCTCCT
GATACTCTTCTCTTGTGAAAGAAGATTCAGACTGGCCATAATGCCTATAT
TGGTTGTGATCGTTAATGTACGAATCTGATGACCCACTCGAATCCGATGA
CACGGTCGAATCTGACACACCTGAATCTGATGAAACCGTTATCGGACTAT
CAGCTGCTCCTTTTTCGCACGTGTCACGGTTCATGAAGTCCCGAATCGAA
CAACTCTTTAAAGAACTGCGAGAGGAGAGCGATGAATAAACTGAAATAGC
TTTGTCACTCTCCTTCACACTACAGCTTCCGAATTTCTTGACCGCTGATC
TTCTTGGCACGAATAACTGTTCCGCGTCGGCCCTAGAATCGCTGGCCATG
AGATAAGTTTGGACTTTTAGCGGCTTGCTAAAAACGAATAAAGAAAGGAT
GATTAAAGAAGTTTACAGGATCAAAAAGAGgatctttaattttaaatttc
caaattcggggCATAAATTAACGGACGTGGAAACAAATTGGACATTCGAA
CAAAACCCTCAAACTCAAACCCAGCCCCTTAGTTCGCtgttttatgattc
tgatagcgctcattAAAGGTATAACGATCACGATTTTATCACGACCATTA
GTAAAATGATGCAAAGTGATGCAAGTGGCTCTGTGTGCAAAACCCCAATA
CGCTCCATAGATAAAAGTAGTATTTAGCGGGTATTCAATTCAAAATTCTT
CCTGGACGAACATAGAGAAGTTCTTATCTCATAATATTGTCCTTTTTTAG
TTATTGTGAACTAAGAAAGATGGTTCAATCGTTTACAAAACAAGTCCTTT
AGTATCAACTTTACTAAAACACATCTTCATTTTGTACTGTCATAAAAATA
GTTACCTGGGGTTAATCGCATAGCGATTCCGACCGTGTTTATTCGCTATG
TAACAATTGAACGTTTCGAGCTCTTGTACAGTTGGCTCACGGTCGGTGAA
TTCATCGGATTCATCTGTTTCTACAATTCCGTCTTCATTGTTGGTGGCTG
TTGAGGTTGAGTATTTTGAATAACTcttgagcaaaaaaatgcaattttgt
tGGTTATACCTATGACCATTTGCATTTTTAAGATATTGAAGCTTAAACAA
AGTTCCCTATATATGCATGGGGTACTTAGTGTATTTCTTTTTACCTCTCC
CCGCAGCAGTAGTCTATTATGAATCGGGCATAAGTTACGTAGCTTTCGCC
GTTGTCAAAACAAACGTTCAATTTGCTTAAGGGTTCCATCActgattcga
acgtttgcttccataatggaaggaattacgtaacttagcaaaaacatgaa
aaatctcTATACAATACCTTTCACTCAACCGTTCACTTTGGAAGGAGCTG
TTATGTGTACTGGTAAACTCCATGTATTGTCTATACATGTTAAGCGACCG
GAATGATTCATTTGTACTGAATGAGGTTTTGTTACTGCTCGAACTTGATC
CAATAGATTTGCGGGAATCTGACGAGTTCTCTCGAGAAGTTGTTTGTTCC
GATCTATAGGATGCCCGAGAGTAAAGACTGGGATTCTCGAAACCGCTCCT
TGTAGATGAAGTTGCTGAGCTGCCCAGACTGCCGTACGATGTACTGTAAC
GACTTTTACGGCTTGCGCGTACCAATGAAAGGAAGGATCGGGTGCTTCGG
CTCCCTTTCCGATGTTGCCGATAAGATTGACGATCAAGATTGTCCTCGTC
GCTTTCACTTGACGTGTCTTCGAATTGATATTCCCTCTTCAGCTTGCGTG
CTAAGCACCAATTCCTCTTACGCACGCAGTTATAGCGGCCGCGCTGTTCG
CTAGGGATACCATTCGAAGAACGGGAATGGTTTCTTGAGTAGATACTGGT
ATGTTCGCTAGATTGAAACGACTTGGTGTCTGACTCAACGTCATACTTTG
GACGGAGTTGATGTACCGTCCAATAGCCGTCGTCGTCGTGTGACGAGTCA
CTCGTGTCGTCGCTTTCTTCATGCGCTAACAAATACACTTTTGCAACCTC
AGGCCCAAAGATTTCATGGATCTTGAGGAACACTCTCGGATCTTTGTCCG
TGTGGAatgttcttttgattttttcaaccaataatgAATGTGGCAGCTCT
GTTTCATGTCGAAGATTAATTTGTTTCAGAATGTATTTTTCGCCTCTTCG
ACACCAAACGTTTCGTATATACGAATAAATTCGTTGGGATCCTTGCACCC
GCTGATCGCCCGTTTGGCCAAACCAAGGTCCCAACTTGATCCATGGACAT
CACCCGGATGAGCACTAAAATGATAAAGATTATattaaggtggtcgttaa
caaactttttgaaaatgtcaaaaaatattaaaattgaaatatctcaaaaa
gtatAAATGATATATTGTTGAAACTTTGTATGATGGTACTGGAAAAATCT
CAGCAACCAGAAGGAGTTAGCTTTTGATATTTGGCACTTATGTTACCCTC
GTGACCTTCTGTGATCtgagtgagaaaaaaaaattgaaaaaattaaaatc
agggggtaaaaaccGAAAAAGCTggggttttttggacctacctccgggta
acccggtggaggttctataaattaacccatgtccgttcgtccgtccgtct
gttaccagcttttctcaggattggctcattagttttttctgattttttgc
ac Coding sequence (CDS) from alignment at scaffold_167:40875..43776 >TCONS_00050139 ID=TCONS_00050139|Name=TCONS_00050139|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_167:40875..43776 (Clytia hemisphaerica)
TTACCGATGACCCTGATGTTGATTATTCTTTACTGTCAGATGACATTGCC
CATGCCGACCTGTCTGAGAATTGCCTCTTAAATATGTTAAGTGAGGAGCA
TTCGCTCGCTCCTGATACTCTTCTCTTGTGAAAGAAGATTCAGACTGGCC
ATAATGCCTATATTGGTTGTGATCGTTAATGTACGAATCTGATGACCCAC
TCGAATCCGATGACACGGTCGAATCTGACACACCTGAATCTGATGAAACC
GTTATCGGACTATCAGCTGCTCCTTTTTCGCACGTGTCACGGTTCATGAA
GTCCCGAATCGAACAACTCTTTAAAGAACTGCGAGAGGAGAGCGATGAAT
AAACTGAAATAGCTTTGTCACTCTCCTTCACACTACAGCTTCCGAATTTC
TTGACCGCTGATCTTCTTGGCACGAATAACTGTTCCGCGTCGGCCCTAGA
ATCGCTGGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050139-exon-scaffold_167-1491911889:40875..43776 | TCONS_00050139-exon-scaffold_167-1491911889:40875..43776 | Clytia hemisphaerica | exon |
| TCONS_00050139-exon-scaffold_167-1510915933:40875..43776 | TCONS_00050139-exon-scaffold_167-1510915933:40875..43776 | Clytia hemisphaerica | exon |
| TCONS_00050139-exon-scaffold_167-1575043694:40875..43776 | TCONS_00050139-exon-scaffold_167-1575043694:40875..43776 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:40875..43776 . |
Blast
The following BLAST results are available for this feature:
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