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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050149 ID=TCONS_00050149|Name=TCONS_00050149|organism=Clytia hemisphaerica|type=transcript|length=1611bp
TGCAGTTTTTATCAAATGTTATCATAGTCAATAAACTTGAATTAAaggtt
tttcttataaaaaaaactatttaaaaacataaagcttcgatgacCAAGAA
CATTGATATCGAGAACATTGTGGAAGGTTTCCGATACCAAAGTTGACGGG
CCCCAGAATTTTAGCGGTGGTTGGGGAAGTGTTTCTTAAGTTTAATtgaa
ttaaattaatttttttcaacttatacccTAAAAAGGGGGCATATGGGTTT
GAAGGTGTGATGGTATTAAACTTCTTTTCCGTAGGTGTTTTGGtgtctaa
agaaaaaaatgacggtattttggtgtcaAAATTGCCATGTCATGAAATAc
ggatttttgagatttttacgTATTTTCTGTCGGTGTTGACGGTGATAGAA
GGAAAATTCGTCGGTATTTTGGTGTCGGCGACCCCGTCACCCACACCCCC
CTCCCACAAAAGACTTGACAGTGTCTAAAGCTTTACCGTGTCAACTTGAT
TTATTAATTTAGTGCTTTTGCGATCCTACCAGTGCTGGAAAAATACTGAC
CAGCAGCACGCCTCCTGTACCGTTTATATATTTACAAGACCACGCAGTTA
TCGCTCTTTCTTGAGacatttttaacaataaaacgTATTTTACGTTCACC
GACGTCATTCAAAGGCGTCTCTAATTCCAGTCCTTCATTTTCAATGTATT
CTTCATCAAGAATCAAACGGTGCTCATTAAATTCATGTTCTTGTAACTTT
ATTAAATCCTTGATTTTACCATCCACCCACTCATCTTTCGTTAGACGTTT
CTCCATTTTTTCAATCCCTCCTTTTCTCTCAATTTCTATAAGAATTTTAA
CTGTTACTTGTAAAACCAAATCTTCCTTTAACAGCAAGGCATTGCTGATT
ACTCTTCCATGCTGAAACAATGATGGCGTTGACACATCTATGAGTCTGAG
TCTAGCACTTGTTAATCGACTAATCATCTTTTTAAGATCTAAGATCGTTT
GATTCTCATGCATTTCCAAAGTGTCGAAATCCATGAAAGATTCAGTAAAG
TTTAATTGTATTTTTCGGCCCGTTTTAATAACCAGATTTAATGTCAACGA
TTCTGTGTATTGATTTCCAGACTGATGTTGATGGTCGTTATGCAACTCCA
GTAAATTCTCATAATTCTCTAATTGCCGATTCACAAAAACGATTTCTTGT
TGCCTTATATCAATTCCTTTCAAACTTCGTACATACTCTTTCACATCACC
CACAACATTCAAGCGATTCGTCAAAACATCAATTGAAAATTGAccagtca
aaaaattaagacgaatcgtttttaaattattttctaaatCCTGCTTTGTG
CAGAGTTCTCCATTCGCTGATTCAGCGTCAAGTTGGATATTGCTATTCTC
CGGCATACTTGTTTTATCTTGTTTCGTGTACCGACTattaaaagttgaaa
ttaaTCTGAAATTACATTTATCTCATTTCCTTCTTGTAGAAAATGTAGAA
TTAAAACATGCTCGGGTGGATTAAGTTCGAGTTATTTACCTCAAAACACA
TCAAATAAATACATACGCTATTTGCACATACGTTGACTTTTTCAGAGAAT
TTATGTTTTCA Run BLAST on NCBI protein sequence of TCONS_00050149-protein >TCONS_00050149-protein ID=TCONS_00050149-protein|Name=TCONS_00050149-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MPENSNIQLDAESANGELCTKQDLENNLKTIRLNFLTGQFSIDVLTNRLN
VVGDVKEYVRSLKGIDIRQQEIVFVNRQLENYENLLELHNDHQHQSGNQY
TESLTLNLVIKTGRKIQLNFTESFMDFDTLEMHENQTILDLKKMISRLTS
ARLRLIDVSTPSLFQHGRVISNALLLKEDLVLQVTVKILIEIERKGGIEK
MEKRLTKDEWVDGKIKDLIKLQEHEFNEHRLILDEEYIENEGLELETPLN
DVGERKIRFIVKNVSRKSDNCVVL Run BLAST on NCBI transcript from alignment at scaffold_167:305058..306668 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050149 ID=TCONS_00050149|Name=TCONS_00050149|organism=Clytia hemisphaerica|type=transcript|length=1611bp|location=Sequence derived from alignment at scaffold_167:305058..306668 (Clytia hemisphaerica)
TGAAAACATAAATTCTCTGAAAAAGTCAACGTATGTGCAAATAGCGTATG
TATTTATTTGATGTGTTTTGAGGTAAATAACTCGAACTTAATCCACCCGA
GCATGTTTTAATTCTACATTTTCTACAAGAAGGAAATGAGATAAATGTAA
TTTCAGAttaatttcaacttttaatAGTCGGTACACGAAACAAGATAAAA
CAAGTATGCCGGAGAATAGCAATATCCAACTTGACGCTGAATCAGCGAAT
GGAGAACTCTGCACAAAGCAGGatttagaaaataatttaaaaacgattcg
tcttaattttttgactggTCAATTTTCAATTGATGTTTTGACGAATCGCT
TGAATGTTGTGGGTGATGTGAAAGAGTATGTACGAAGTTTGAAAGGAATT
GATATAAGGCAACAAGAAATCGTTTTTGTGAATCGGCAATTAGAGAATTA
TGAGAATTTACTGGAGTTGCATAACGACCATCAACATCAGTCTGGAAATC
AATACACAGAATCGTTGACATTAAATCTGGTTATTAAAACGGGCCGAAAA
ATACAATTAAACTTTACTGAATCTTTCATGGATTTCGACACTTTGGAAAT
GCATGAGAATCAAACGATCTTAGATCTTAAAAAGATGATTAGTCGATTAA
CAAGTGCTAGACTCAGACTCATAGATGTGTCAACGCCATCATTGTTTCAG
CATGGAAGAGTAATCAGCAATGCCTTGCTGTTAAAGGAAGATTTGGTTTT
ACAAGTAACAGTTAAAATTCTTATAGAAATTGAGAGAAAAGGAGGGATTG
AAAAAATGGAGAAACGTCTAACGAAAGATGAGTGGGTGGATGGTAAAATC
AAGGATTTAATAAAGTTACAAGAACATGAATTTAATGAGCACCGTTTGAT
TCTTGATGAAGAATACATTGAAAATGAAGGACTGGAATTAGAGACGCCTT
TGAATGACGTCGGTGAACGTAAAATAcgttttattgttaaaaatgtCTCA
AGAAAGAGCGATAACTGCGTGGTCTTGTAAATATATAAACGGTACAGGAG
GCGTGCTGCTGGTCAGTATTTTTCCAGCACTGGTAGGATCGCAAAAGCAC
TAAATTAATAAATCAAGTTGACACGGTAAAGCTTTAGACACTGTCAAGTC
TTTTGTGGGAGGGGGGTGTGGGTGACGGGGTCGCCGACACCAAAATACCG
ACGAATTTTCCTTCTATCACCGTCAACACCGACAGAAAATAcgtaaaaat
ctcaaaaatccgTATTTCATGACATGGCAATTTtgacaccaaaataccgt
catttttttctttagacaCCAAAACACCTACGGAAAAGAAGTTTAATACC
ATCACACCTTCAAACCCATATGCCCCCTTTTTAgggtataagttgaaaaa
aattaatttaattcaATTAAACTTAAGAAACACTTCCCCAACCACCGCTA
AAATTCTGGGGCCCGTCAACTTTGGTATCGGAAACCTTCCACAATGTTCT
CGATATCAATGTTCTTGgtcatcgaagctttatgtttttaaatagttttt
tttataagaaaaacctTTAATTCAAGTTTATTGACTATGATAACATTTGA
TAAAAACTGCA Coding sequence (CDS) from alignment at scaffold_167:305058..306668 >TCONS_00050149 ID=TCONS_00050149|Name=TCONS_00050149|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at scaffold_167:305058..306668 (Clytia hemisphaerica)
ATGCCGGAGAATAGCAATATCCAACTTGACGCTGAATCAGCGAATGGAGA
ACTCTGCACAAAGCAGGatttagaaaataatttaaaaacgattcgtctta
attttttgactggTCAATTTTCAATTGATGTTTTGACGAATCGCTTGAAT
GTTGTGGGTGATGTGAAAGAGTATGTACGAAGTTTGAAAGGAATTGATAT
AAGGCAACAAGAAATCGTTTTTGTGAATCGGCAATTAGAGAATTATGAGA
ATTTACTGGAGTTGCATAACGACCATCAACATCAGTCTGGAAATCAATAC
ACAGAATCGTTGACATTAAATCTGGTTATTAAAACGGGCCGAAAAATACA
ATTAAACTTTACTGAATCTTTCATGGATTTCGACACTTTGGAAATGCATG
AGAATCAAACGATCTTAGATCTTAAAAAGATGATTAGTCGATTAACAAGT
GCTAGACTCAGACTCATAGATGTGTCAACGCCATCATTGTTTCAGCATGG
AAGAGTAATCAGCAATGCCTTGCTGTTAAAGGAAGATTTGGTTTTACAAG
TAACAGTTAAAATTCTTATAGAAATTGAGAGAAAAGGAGGGATTGAAAAA
ATGGAGAAACGTCTAACGAAAGATGAGTGGGTGGATGGTAAAATCAAGGA
TTTAATAAAGTTACAAGAACATGAATTTAATGAGCACCGTTTGATTCTTG
ATGAAGAATACATTGAAAATGAAGGACTGGAATTAGAGACGCCTTTGAAT
GACGTCGGTGAACGTAAAATAcgttttattgttaaaaatgtCTCAAGAAA
GAGCGATAACTGCGTGGTCTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050149-exon-scaffold_167-1491911889:305058..306668 | TCONS_00050149-exon-scaffold_167-1491911889:305058..306668 | Clytia hemisphaerica | exon |
| TCONS_00050149-exon-scaffold_167-1510915933:305058..306668 | TCONS_00050149-exon-scaffold_167-1510915933:305058..306668 | Clytia hemisphaerica | exon |
| TCONS_00050149-exon-scaffold_167-1575043694:305058..306668 | TCONS_00050149-exon-scaffold_167-1575043694:305058..306668 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:305058..306668 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029071 | Ubiquitin-rel_dom |
Blast
The following BLAST results are available for this feature:
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