TCONS_00050152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050152
Unique NameTCONS_00050152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length226

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050152 ID=TCONS_00050152|Name=TCONS_00050152|organism=Clytia hemisphaerica|type=transcript|length=226bp
TGCATTTGTTATGATTGATTTATGAAATACAATATTGGTAGTTATCTAAA
AGTGTAAATATTGAAGCACATATAAAATGCAAGCAAGTAAAAGTAAGAGT
TACAATGTCCGTTAAATTTCTACTGTTATActtatctatattataatacg
cttaaatcggaactctcccattctcgcatgaggctttttcgctagcgatt
tttaaatacacggcaatttttttcgc
Run BLAST on NCBI

transcript from alignment at scaffold_167:361016..361241

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050152 ID=TCONS_00050152|Name=TCONS_00050152|organism=Clytia hemisphaerica|type=transcript|length=226bp|location=Sequence derived from alignment at scaffold_167:361016..361241 (Clytia hemisphaerica)
gcgaaaaaaattgccgtgtatttaaaaatcgctagcgaaaaagcctcatg
cgagaatgggagagttccgatttaagcgtattataatatagataagTATA
ACAGTAGAAATTTAACGGACATTGTAACTCTTACTTTTACTTGCTTGCAT
TTTATATGTGCTTCAATATTTACACTTTTAGATAACTACCAATATTGTAT
TTCATAAATCAATCATAACAAATGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031757XLOC_031757Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050152-exon-scaffold_167-1491911889:361016..361241TCONS_00050152-exon-scaffold_167-1491911889:361016..361241Clytia hemisphaericaexon
TCONS_00050152-exon-scaffold_167-1510915933:361016..361241TCONS_00050152-exon-scaffold_167-1510915933:361016..361241Clytia hemisphaericaexon
TCONS_00050152-exon-scaffold_167-1575043694:361016..361241TCONS_00050152-exon-scaffold_167-1575043694:361016..361241Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:361016..361241 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.8008	3.43132	3.50199	8.88748	2.26161	2.3185	0	0	0	0	0	0	3.75527	5.96745	0.371551	0	0	0	3.05038	3.56981	3.9066	0	7.16804	11.5769	2.79263	2.85738	6.3767	10.4104	12.1249	8.08035
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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