TCONS_00050155 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050155
Unique NameTCONS_00050155
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050155 ID=TCONS_00050155|Name=TCONS_00050155|organism=Clytia hemisphaerica|type=transcript|length=400bp
TGGCAATTTCCCAGGCCTGTGTTTTTAtagctcaaaaaatgaaaattgtc
tAAAAAGCAAACCCAAAACCCACCCTTGTATACATGTCATTTCAAAGGCA
TGGGTTTTTTGAAGTCAGGtccgaaaatggccaaatcccAGGCCTGGGTT
TTTCAAAGTGAGGACTCCATTGGGATTTGGCAATTTCCCAGGCCTGCATT
TTTAtagctcaaaaaatgaaaattgtttaaaaagcaAACCCAAAACCCAC
CCTTGTATACGGGTCATTTCCAAGGCTTGGGTTTTTTGAAGTCTGGtccg
aaaatggccaaatcccAGGCCTGGGTTTTTCAAAGTGAGGACTCCATTGG
GATTTGGCAATTTCCCAGGCCTGCGTTTTTATAGCTCAAAAAATGAAANN
Run BLAST on NCBI

transcript from alignment at scaffold_167:398305..398704

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050155 ID=TCONS_00050155|Name=TCONS_00050155|organism=Clytia hemisphaerica|type=transcript|length=400bp|location=Sequence derived from alignment at scaffold_167:398305..398704 (Clytia hemisphaerica)
NNTTTCATTTTTTGAGCTATAAAAACGCAGGCCTGGGAAATTGCCAAATC
CCAATGGAGTCCTCACTTTGAAAAACCCAGGCCTgggatttggccatttt
cggaCCAGACTTCAAAAAACCCAAGCCTTGGAAATGACCCGTATACAAGG
GTGGGTTTTGGGTTtgctttttaaacaattttcattttttgagctaTAAA
AATGCAGGCCTGGGAAATTGCCAAATCCCAATGGAGTCCTCACTTTGAAA
AACCCAGGCCTgggatttggccattttcggaCCTGACTTCAAAAAACCCA
TGCCTTTGAAATGACATGTATACAAGGGTGGGTTTTGGGTTTGCTTTTTa
gacaattttcattttttgagctaTAAAAACACAGGCCTGGGAAATTGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031760XLOC_031760Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050155-exon-scaffold_167-1491911889:398305..398704TCONS_00050155-exon-scaffold_167-1491911889:398305..398704Clytia hemisphaericaexon
TCONS_00050155-exon-scaffold_167-1510915933:398305..398704TCONS_00050155-exon-scaffold_167-1510915933:398305..398704Clytia hemisphaericaexon
TCONS_00050155-exon-scaffold_167-1575043694:398305..398704TCONS_00050155-exon-scaffold_167-1575043694:398305..398704Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:398305..398704 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.185747	0	0.420625	0	0.558268	0.867773	1.19404	1.34141	1.14085	0.631948	0.564561	0.798847	0.411915	0.883253	0.843788	0.36346	0.418319	1.44514	1.57963	0.826484	1.84087	1.40448	0.711279	0.211899	0.276655	0.188397	0	0	0.618495	0.885363
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050155 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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