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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050169 ID=TCONS_00050169|Name=TCONS_00050169|organism=Clytia hemisphaerica|type=transcript|length=1855bp
gttttgcccttagttCTTTATCGAATAAAtgttcatattttttcatttgc
agtaaatggaaaattatacaaaaataaaagatgGAAAAGATGAACAGGTA
GGACCAGTACAGCAGGaaccttttgttttgattgtcacCACTGACAACAA
GTTTTATCAGGCTGTTCGAaatgttggaaagatattaaaaGAACATGGGA
AAGCTATTGTAATTGGTGAGGGTTTGTATGCTCAAAAGGCTATTGCAGTT
GCtgataaaatcaaagaaacatGGTATGTGAGTGAAACTATAGATATTTT
TGATACTGATTATAAAGATATTTGGATACCCAAAACAGATGAGTTGGGGC
TTGAAAATCTTGAGGTGACCAGATCAGTCCCTACTACCAAGATTACGCTT
GTTCAGACAGAGAAACCTAAACAAAGACATTCAAATAATGGTCGACAGCA
ATCAAACAATGTTAAACAAACTGGTAGAAATGGGAAAGTACAGTCACAAC
AAAATTGTGATTCTACTCGGAACCAGAAACCACCAAGGCGTGATTATAGG
AACTCAAGGAGAAGCAAAAGTGAATCTGAAGGTGAAACGCTAGGTTCTGG
TCAAAGGTATCAAGATAAACCCAACCCTAGACAAAGTAATGGACATCATA
ACAGAACCCGAACAGAAGGTGATAACAAACAAAGGACTGATCGGAATTCA
TCGCatagaaataatcaaaattcttCTTTCGAAGGGGATGAAAGGACACA
CCAAAACCGTAATGGTCAGTATAAAAAGCATCAGAGGAAACCAAGAACTA
GAAATGGAGATTCTCATCCTGAAGACCCAAACAATGGGGTAGATAGTGTT
CAAAATAATGGAAATGGAACGCGAAATCCCCTAGTTGATCACCAGAAGAT
ACATCATTCAGAAGGCTCCAATCCCAGGACACAACGTGAAAATCCTTCAA
CGTCATCGAGGACGAAAACCATTTCTGATTCGTCACATCAAGATAATGAA
CCCTAGGTTCAAGGTTGATTTGTGGATTTATTAGTTGTAGTGGCATCGCA
CTTCTGAGCTCTCTAAGATATCCCATTTCTGTTATGGTGGAAATACCTTG
ACTTTCTTCTTTTGCTTAGGTATGCTTTtcttattgaaataaaatatttt
gtttcataaacattaaaattaattcgtaattatatttttagatGGTACAT
GAAGTTTCAGATATTTTGTTATCTTTTAATAATATTACAAGGTATATTAT
ATAGGTTTtatcaaattacaaaaaataaatttatgacaactttaaatttg
aaacaCTATTTATCAAGTGTACAAGGTTATTCCATGCGTCAAAGTTCTAC
ATTTtgttgcttttaatgatcaatATACcttaagggtagaaattttagcg
ggaatttaatttggttgatgaccgaaaaagttttttcaaagggaatttaa
tttggcggatggcgggaATAATTAAATCCGTTCTCTTTCCGCcagaattt
cttcccttaatgtAAAACTTCTAAAAAGCTATATGATAATATTATATAGA
CCTATAGAACCGAATTTATGGTATTGGGTTTAGAAAATAAGTACAAGTTT
TATCCTTTGTCTTTAGGTTATTCCGTTATTGGCTTCATTTTTcttcgaaa
aaagattttatgaGCTTGTATTATTACCCATACTTTGCAAAGGCTTTTTG
AGCTTCTTCATTTaaattctattatttttacTATAAGTACGTATTTATAT
ACAATGTTTTTTAAGTATTGGTGGAATTAGATAATTTACTAATTAatgtt
caaattaaaaaaaatggattttGTTGTCTCGAAAACACCCTTGTGCCACA
GACCC Run BLAST on NCBI protein sequence of TCONS_00050169-protein >TCONS_00050169-protein ID=TCONS_00050169-protein|Name=TCONS_00050169-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
MENYTKIKDGKDEQVGPVQQEPFVLIVTTDNKFYQAVRNVGKILKEHGKA
IVIGEGLYAQKAIAVADKIKETWYVSETIDIFDTDYKDIWIPKTDELGLE
NLEVTRSVPTTKITLVQTEKPKQRHSNNGRQQSNNVKQTGRNGKVQSQQN
CDSTRNQKPPRRDYRNSRRSKSESEGETLGSGQRYQDKPNPRQSNGHHNR
TRTEGDNKQRTDRNSSHRNNQNSSFEGDERTHQNRNGQYKKHQRKPRTRN
GDSHPEDPNNGVDSVQNNGNGTRNPLVDHQKIHHSEGSNPRTQRENPSTS
SRTKTISDSSHQDNEP Run BLAST on NCBI transcript from alignment at scaffold_167:795948..797802 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050169 ID=TCONS_00050169|Name=TCONS_00050169|organism=Clytia hemisphaerica|type=transcript|length=1855bp|location=Sequence derived from alignment at scaffold_167:795948..797802 (Clytia hemisphaerica)
GGGTCTGTGGCACAAGGGTGTTTTCGAGACAACaaaatccatttttttta
atttgaacatTAATTAGTAAATTATCTAATTCCACCAATACTTAAAAAAC
ATTGTATATAAATACGTACTTATAgtaaaaataatagaatttAAATGAAG
AAGCTCAAAAAGCCTTTGCAAAGTATGGGTAATAATACAAGCtcataaaa
tcttttttcgaagAAAAATGAAGCCAATAACGGAATAACCTAAAGACAAA
GGATAAAACTTGTACTTATTTTCTAAACCCAATACCATAAATTCGGTTCT
ATAGGTCTATATAATATTATCATATAGCTTTTTAGAAGTTTTacattaag
ggaagaaattctgGCGGAAAGAGAACGGATTTAATTATtcccgccatccg
ccaaattaaattccctttgaaaaaactttttcggtcatcaaccaaattaa
attcccgctaaaatttctacccttaagGTATattgatcattaaaagcaac
aAAATGTAGAACTTTGACGCATGGAATAACCTTGTACACTTGATAAATAG
tgtttcaaatttaaagttgtcataaatttattttttgtaatttgataAAA
CCTATATAATATACCTTGTAATATTATTAAAAGATAACAAAATATCTGAA
ACTTCATGTACCatctaaaaatataattacgaattaattttaatgtttat
gaaacaaaatattttatttcaataagaAAAGCATACCTAAGCAAAAGAAG
AAAGTCAAGGTATTTCCACCATAACAGAAATGGGATATCTTAGAGAGCTC
AGAAGTGCGATGCCACTACAACTAATAAATCCACAAATCAACCTTGAACC
TAGGGTTCATTATCTTGATGTGACGAATCAGAAATGGTTTTCGTCCTCGA
TGACGTTGAAGGATTTTCACGTTGTGTCCTGGGATTGGAGCCTTCTGAAT
GATGTATCTTCTGGTGATCAACTAGGGGATTTCGCGTTCCATTTCCATTA
TTTTGAACACTATCTACCCCATTGTTTGGGTCTTCAGGATGAGAATCTCC
ATTTCTAGTTCTTGGTTTCCTCTGATGCTTTTTATACTGACCATTACGGT
TTTGGTGTGTCCTTTCATCCCCTTCGAAAGaagaattttgattatttcta
tGCGATGAATTCCGATCAGTCCTTTGTTTGTTATCACCTTCTGTTCGGGT
TCTGTTATGATGTCCATTACTTTGTCTAGGGTTGGGTTTATCTTGATACC
TTTGACCAGAACCTAGCGTTTCACCTTCAGATTCACTTTTGCTTCTCCTT
GAGTTCCTATAATCACGCCTTGGTGGTTTCTGGTTCCGAGTAGAATCACA
ATTTTGTTGTGACTGTACTTTCCCATTTCTACCAGTTTGTTTAACATTGT
TTGATTGCTGTCGACCATTATTTGAATGTCTTTGTTTAGGTTTCTCTGTC
TGAACAAGCGTAATCTTGGTAGTAGGGACTGATCTGGTCACCTCAAGATT
TTCAAGCCCCAACTCATCTGTTTTGGGTATCCAAATATCTTTATAATCAG
TATCAAAAATATCTATAGTTTCACTCACATACCatgtttctttgatttta
tcaGCAACTGCAATAGCCTTTTGAGCATACAAACCCTCACCAATTACAAT
AGCTTTCCCATGTTCttttaatatctttccaacattTCGAACAGCCTGAT
AAAACTTGTTGTCAGTGgtgacaatcaaaacaaaaggttCCTGCTGTACT
GGTCCTACCTGTTCATCTTTTCcatcttttatttttgtataattttccat
ttactgcaaatgaaaaaatatgaacaTTTATTCGATAAAGaactaagggc
aaaac Coding sequence (CDS) from alignment at scaffold_167:795948..797802 >TCONS_00050169 ID=TCONS_00050169|Name=TCONS_00050169|organism=Clytia hemisphaerica|type=CDS|length=951bp|location=Sequence derived from alignment at scaffold_167:795948..797802 (Clytia hemisphaerica)
CTAGGGTTCATTATCTTGATGTGACGAATCAGAAATGGTTTTCGTCCTCG
ATGACGTTGAAGGATTTTCACGTTGTGTCCTGGGATTGGAGCCTTCTGAA
TGATGTATCTTCTGGTGATCAACTAGGGGATTTCGCGTTCCATTTCCATT
ATTTTGAACACTATCTACCCCATTGTTTGGGTCTTCAGGATGAGAATCTC
CATTTCTAGTTCTTGGTTTCCTCTGATGCTTTTTATACTGACCATTACGG
TTTTGGTGTGTCCTTTCATCCCCTTCGAAAGaagaattttgattatttct
atGCGATGAATTCCGATCAGTCCTTTGTTTGTTATCACCTTCTGTTCGGG
TTCTGTTATGATGTCCATTACTTTGTCTAGGGTTGGGTTTATCTTGATAC
CTTTGACCAGAACCTAGCGTTTCACCTTCAGATTCACTTTTGCTTCTCCT
TGAGTTCCTATAATCACGCCTTGGTGGTTTCTGGTTCCGAGTAGAATCAC
AATTTTGTTGTGACTGTACTTTCCCATTTCTACCAGTTTGTTTAACATTG
TTTGATTGCTGTCGACCATTATTTGAATGTCTTTGTTTAGGTTTCTCTGT
CTGAACAAGCGTAATCTTGGTAGTAGGGACTGATCTGGTCACCTCAAGAT
TTTCAAGCCCCAACTCATCTGTTTTGGGTATCCAAATATCTTTATAATCA
GTATCAAAAATATCTATAGTTTCACTCACATACCatgtttctttgatttt
atcaGCAACTGCAATAGCCTTTTGAGCATACAAACCCTCACCAATTACAA
TAGCTTTCCCATGTTCttttaatatctttccaacattTCGAACAGCCTGA
TAAAACTTGTTGTCAGTGgtgacaatcaaaacaaaaggttCCTGCTGTAC
TGGTCCTACCTGTTCATCTTTTCcatcttttatttttgtataattttcca
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050169-exon-scaffold_167-1491911889:795948..797802 | TCONS_00050169-exon-scaffold_167-1491911889:795948..797802 | Clytia hemisphaerica | exon |
| TCONS_00050169-exon-scaffold_167-1510915933:795948..797802 | TCONS_00050169-exon-scaffold_167-1510915933:795948..797802 | Clytia hemisphaerica | exon |
| TCONS_00050169-exon-scaffold_167-1575043694:795948..797802 | TCONS_00050169-exon-scaffold_167-1575043694:795948..797802 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:795948..797802 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002775 | DNA/RNA-bd_Alba-like |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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