TCONS_00050170 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050170
Unique NameTCONS_00050170
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050170 ID=TCONS_00050170|Name=TCONS_00050170|organism=Clytia hemisphaerica|type=transcript|length=582bp
cggctattaggtacccgagagtaagttgatatttcaaaaaaaaaactcaa
aagatgtaagcaaaaaaaaattattaaaattcaaataaaattcatatatt
ttttaCTATCAACCACTCTTCATAGACGACCTttcggttattagttctta
caaagcaAACAGCAcacaatgtgagcatattttatttttataagcttCTA
CTTTATAATTTCTataagttcttacaaagtaatgcACTTTTTTATCAGCC
AATCAGGTAATCAGagagaagaaaaacattcgatttttgtgTTTCTTTTT
TCGTGTGTAAAGATATAATCGATATTGTGCTGCGCACCACTTTTCGATGG
TTTCAAAATGAAATGAGAAAAGCATTAATGCGGCCTTCAAACATTCATTC
GCGATTATCAATGCGTTGGCGGGGCATTCGTAGCGACTTGTTTGTATATC
AGGTGCGGCAATACAATTTGTAGAAATTCCGCGAAATTATTAGTCTTTAA
TTTAATTGTTTATATAATGATGTATTTTTAATTATGTAACATATGCGTGT
ATTAATGTTTATAGataaatatataatttttt
Run BLAST on NCBI

transcript from alignment at scaffold_167:824931..825512

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050170 ID=TCONS_00050170|Name=TCONS_00050170|organism=Clytia hemisphaerica|type=transcript|length=582bp|location=Sequence derived from alignment at scaffold_167:824931..825512 (Clytia hemisphaerica)
aaaaaattatatatttatCTATAAACATTAATACACGCATATGTTACATA
ATTAAAAATACATCATTATATAAACAATTAAATTAAAGACTAATAATTTC
GCGGAATTTCTACAAATTGTATTGCCGCACCTGATATACAAACAAGTCGC
TACGAATGCCCCGCCAACGCATTGATAATCGCGAATGAATGTTTGAAGGC
CGCATTAATGCTTTTCTCATTTCATTTTGAAACCATCGAAAAGTGGTGCG
CAGCACAATATCGATTATATCTTTACACACGAAAAAAGAAAcacaaaaat
cgaatgtttttcttctctCTGATTACCTGATTGGCTGATAAAAAAGTgca
ttactttgtaagaacttatAGAAATTATAAAGTAGaagcttataaaaata
aaatatgctcacattgtgTGCTGTTtgctttgtaagaactaataaccgaa
AGGTCGTCTATGAAGAGTGGTTGATAGtaaaaaatatatgaattttattt
gaattttaataatttttttttgcttacatcttttgagttttttttttgaa
atatcaacttactctcgggtacctaatagccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031775XLOC_031775Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050170-exon-scaffold_167-1491911889:824931..825512TCONS_00050170-exon-scaffold_167-1491911889:824931..825512Clytia hemisphaericaexon
TCONS_00050170-exon-scaffold_167-1510915933:824931..825512TCONS_00050170-exon-scaffold_167-1510915933:824931..825512Clytia hemisphaericaexon
TCONS_00050170-exon-scaffold_167-1575043694:824931..825512TCONS_00050170-exon-scaffold_167-1575043694:824931..825512Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:824931..825512 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0927517	0.323081	0	0.128267	0	0.122285	0.228963	0.240454	1.68776	0.0963638	0.316729	2.15076	2.56206	0.270046	0.405721	0	0.0731849	1.41552	2.96249	0.0919622	0.134568	0	0.198296	1.0212	1.64052	2.08674	2.08783	0.316709	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050170 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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