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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050176 ID=TCONS_00050176|Name=TCONS_00050176|organism=Clytia hemisphaerica|type=transcript|length=1231bp
aatttaaattgtaaaatgaaagttattttcatttataaaaaaaatatttt
tctgagtttttcaataaaaaattacttggcACTTATGGGCCACCATACTG
GTGTTTCTTGCGGCACGGTATTCGTTTTGGGGTCAGGTTTGGTTTGTGTT
TCTTGCGGCATGGTATCCGTTTTGGTGTCAGGTTTGGCTGGTGTTTCTTG
CGGCACGGTAACCGTTTTAGATTCACTGAACTGTTTCTCCATACTCTTTT
TAAATTCAGTGAACTGTTGAACAATATGTTGGTAATATTTGTGCATTTGG
ATATCAGCTCTTTGGATGATACCAAGAAGGCCGTTTAAAATCTGTACAGC
TCTTTGCATGTCAGCTTTCTTGGTCGCTTTCAGATCCAATACCAtctgtt
ttataagcatagttGCATCTATATTATTTGATGGGCCTTGAAGTTCCTCT
TGAAATTTACTGAAATATTTCTTATCAGGAAATTCAGTCATGTTTGTATC
CTCTTTGAACGTTTTAGAATCTAAATATTGATGATCGTCAGTATGCTTAT
ATAAAAATTCCTCAACTTTCCTTCCGTTGCTTGGCTCGANTTTAATTCTC
ATTTACTTTTCGATatcattttaaaaagcattttgtttttttatttttaa
aatcactttTCTCACGTAGCCCATCAGTGCCAAAGACAGCTTTCTCTCCA
GACCCCTACAGGCTTAAAAGATTGAAGTTACTATGGTTACTTATTGGTTT
GTTTATAGTTCACGGCCCATCAAGGCCAAAACAACTTAGTGCTTAGACCC
CAAACATATTTACAAATGTGCNCTTCCCATAGGAAACATCatgtcaaatt
caaattcaatatattcttttttcaaattaggATTCATCAATCGGGCAAAG
GCTGCCCCTTCCATAAAACTTCCAGAGAACATGAAAGATTGGATAAGCTC
CTGTAACTCAATTTCATTATCAATTTGTCCAAAACTTTTACGAAGGCCAT
ATCCAAACCATTTGAATTGTTCGTCTGAAATTTTCGGGAAATGTTTTTGA
ACGTCAATTTTTGTGAGCAGTTCATTCAAATGAGATAAATTTTCGTTTTC
CATTTTGTAGCAGAGTATNCATCAAACAATGGGGAACATGAagagccttt
gttttgatgtgtaaataaagagtcgaattttttcttaatatgcAGCATGC
GAGCATGAAAGGAAAAATGTCGAGAAGAGAG Run BLAST on NCBI protein sequence of TCONS_00050176-protein >TCONS_00050176-protein ID=TCONS_00050176-protein|Name=TCONS_00050176-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MRIKXEPSNGRKVEEFLYKHTDDHQYLDSKTFKEDTNMTEFPDKKYFSKF
QEELQGPSNNIDATMLIKQMVLDLKATKKADMQRAVQILNGLLGIIQRAD
IQMHKYYQHIVQQFTEFKKSMEKQFSESKTVTVPQETPAKPDTKTDTMPQ
ETQTKPDPKTNTVPQETPVWWPISAK Run BLAST on NCBI transcript from alignment at scaffold_167:1049936..1051166 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050176 ID=TCONS_00050176|Name=TCONS_00050176|organism=Clytia hemisphaerica|type=transcript|length=1231bp|location=Sequence derived from alignment at scaffold_167:1049936..1051166 (Clytia hemisphaerica)
CTCTCTTCTCGACATTTTTCCTTTCATGCTCGCATGCTgcatattaagaa
aaaattcgactctttatttacacatcaaaacaaaggctctTCATGTTCCC
CATTGTTTGATGNATACTCTGCTACAAAATGGAAAACGAAAATTTATCTC
ATTTGAATGAACTGCTCACAAAAATTGACGTTCAAAAACATTTCCCGAAA
ATTTCAGACGAACAATTCAAATGGTTTGGATATGGCCTTCGTAAAAGTTT
TGGACAAATTGATAATGAAATTGAGTTACAGGAGCTTATCCAATCTTTCA
TGTTCTCTGGAAGTTTTATGGAAGGGGCAGCCTTTGCCCGATTGATGAAT
cctaatttgaaaaaagaatatattgaatttgaatttgacatGATGTTTCC
TATGGGAAGNGCACATTTGTAAATATGTTTGGGGTCTAAGCACTAAGTTG
TTTTGGCCTTGATGGGCCGTGAACTATAAACAAACCAATAAGTAACCATA
GTAACTTCAATCTTTTAAGCCTGTAGGGGTCTGGAGAGAAAGCTGTCTTT
GGCACTGATGGGCTACGTGAGAaaagtgattttaaaaataaaaaaacaaa
atgctttttaaaatgatATCGAAAAGTAAATGAGAATTAAANTCGAGCCA
AGCAACGGAAGGAAAGTTGAGGAATTTTTATATAAGCATACTGACGATCA
TCAATATTTAGATTCTAAAACGTTCAAAGAGGATACAAACATGACTGAAT
TTCCTGATAAGAAATATTTCAGTAAATTTCAAGAGGAACTTCAAGGCCCA
TCAAATAATATAGATGCaactatgcttataaaacagaTGGTATTGGATCT
GAAAGCGACCAAGAAAGCTGACATGCAAAGAGCTGTACAGATTTTAAACG
GCCTTCTTGGTATCATCCAAAGAGCTGATATCCAAATGCACAAATATTAC
CAACATATTGTTCAACAGTTCACTGAATTTAAAAAGAGTATGGAGAAACA
GTTCAGTGAATCTAAAACGGTTACCGTGCCGCAAGAAACACCAGCCAAAC
CTGACACCAAAACGGATACCATGCCGCAAGAAACACAAACCAAACCTGAC
CCCAAAACGAATACCGTGCCGCAAGAAACACCAGTATGGTGGCCCATAAG
Tgccaagtaattttttattgaaaaactcagaaaaatattttttttataaa
tgaaaataactttcattttacaatttaaatt Coding sequence (CDS) from alignment at scaffold_167:1049936..1051166 >TCONS_00050176 ID=TCONS_00050176|Name=TCONS_00050176|organism=Clytia hemisphaerica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_167:1049936..1051166 (Clytia hemisphaerica)
ATGAGAATTAAANTCGAGCCAAGCAACGGAAGGAAAGTTGAGGAATTTTT
ATATAAGCATACTGACGATCATCAATATTTAGATTCTAAAACGTTCAAAG
AGGATACAAACATGACTGAATTTCCTGATAAGAAATATTTCAGTAAATTT
CAAGAGGAACTTCAAGGCCCATCAAATAATATAGATGCaactatgcttat
aaaacagaTGGTATTGGATCTGAAAGCGACCAAGAAAGCTGACATGCAAA
GAGCTGTACAGATTTTAAACGGCCTTCTTGGTATCATCCAAAGAGCTGAT
ATCCAAATGCACAAATATTACCAACATATTGTTCAACAGTTCACTGAATT
TAAAAAGAGTATGGAGAAACAGTTCAGTGAATCTAAAACGGTTACCGTGC
CGCAAGAAACACCAGCCAAACCTGACACCAAAACGGATACCATGCCGCAA
GAAACACAAACCAAACCTGACCCCAAAACGAATACCGTGCCGCAAGAAAC
ACCAGTATGGTGGCCCATAAGTgccaagtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050176-exon-scaffold_167-1491911889:1049936..1051166 | TCONS_00050176-exon-scaffold_167-1491911889:1049936..1051166 | Clytia hemisphaerica | exon |
| TCONS_00050176-exon-scaffold_167-1510915933:1049936..1051166 | TCONS_00050176-exon-scaffold_167-1510915933:1049936..1051166 | Clytia hemisphaerica | exon |
| TCONS_00050176-exon-scaffold_167-1575043694:1049936..1051166 | TCONS_00050176-exon-scaffold_167-1575043694:1049936..1051166 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1049936..1051166 . |
Blast
The following BLAST results are available for this feature:
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