|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050181 ID=TCONS_00050181|Name=TCONS_00050181|organism=Clytia hemisphaerica|type=transcript|length=1402bp
ATGACTATAATgcgcagtagcgtggtgggtcaactaaaatttggttaAAC
TGGGTaggcaattttagaagattttgattttggcgcccGCTATGATaagt
aaatatttctttaaaaataacgCGAGCAAAGTGAGGACAAAAATTTTGGG
gtgttttctctcttttttggccaaaaaatacCATATCTAGTAATCAGTGG
TATCTTTTTGCGTCCTTTGTTTTTCGGCGCCATTTGAAACACCTCTGCTC
GAGGGGCATTTGCCCCCAGCCACCACACTACTGTATAACGGTTAGTTCAA
GATGGTAGACATAAGTGAAAACAAACAGAATCAATAGACTGGAATAAAGg
gttttaaataaaaatgtggtgattttaaagaaaaatagtaTAAGAAATAG
TCAGCCCCCAGCCTTGCCATTGAAATTTCAGGCCCCCGAAACATAtcagg
tccccccaaatatttggcTGTATTTTAGCTTGAATAATGTAGCCAACAAT
GTTCTAAGCTGTACTGTATCGTAAGTTGGTCAAATATCGACATTCCTTCT
CTAATTCCAGCATTATTTTTAAGAGATAGGAAaaatatgaaagttggaat
cactgattgaaaaaggatttttcctctctgactagtaagcaaagaaaaat
agtttttgacAGGGAAAATACTAGAATTGCACTGGTGACGAGCCGCAAGG
AAGATTTGTTTGTGATCAGGTGTCTGTAGAATTGCAGTGAAAAGTTATAC
CGGATGGTCCAGAAATAACAtgtcaaaatttaaaacttaaaTATCTTGAA
AAAATAATCATGGACAAtactgcaaattttttttgctctaagtTTGAATA
ATCTTTTTGCTAGTatgattcttttttctttgagttTTAAGAAATATCAC
CCTGATCTTAATGTtgtaccgggtgtgccacaaaaaggtttctctagtta
aaactaattttctcaaaatgtaaaatttttaaaagaaccattggattctt
ttttcattaaaaagaagaaaaattgcgTCCTGTTCAGTCAGGACttcctt
tcactttatcgatattacgcgcGCGGCAGTGTGTGCTATAATATTtcggt
ttcgctttcgatttcaagcaaaggttttAGCAACAGGATGCGCATTCATA
ACAACGGGGCtcggtagaaaaatctaaacatagaattttaaAGAAATACC
AATCAttgtatagagcactaaaaaatacccatttctatgtttagtttgtt
ctaccttgattataactgaaaatatatattcaaaaaacatttgtCAGCCA
TCAGCCCACGCAGTAATCTTTGCCTGCTTCAATCCTTAGACAATGAATGT
TAATGCCGTTTGGGCATTGATTTTATGTTTATTCTTTGTGTAACTAATTG
AT Run BLAST on NCBI transcript from alignment at scaffold_167:1179361..1180762 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050181 ID=TCONS_00050181|Name=TCONS_00050181|organism=Clytia hemisphaerica|type=transcript|length=1402bp|location=Sequence derived from alignment at scaffold_167:1179361..1180762 (Clytia hemisphaerica)
ATCAATTAGTTACACAAAGAATAAACATAAAATCAATGCCCAAACGGCAT
TAACATTCATTGTCTAAGGATTGAAGCAGGCAAAGATTACTGCGTGGGCT
GATGGCTGacaaatgttttttgaatatatattttcagttataatcaaggt
agaacaaactaaacatagaaatgggtattttttagtgctctatacaaTGA
TTGGTATTTCTttaaaattctatgtttagatttttctaccgaGCCCCGTT
GTTATGAATGCGCATCCTGTTGCTaaaacctttgcttgaaatcgaaagcg
aaaccgaAATATTATAGCACACACTGCCGCgcgcgtaatatcgataaagt
gaaaggaaGTCCTGACTGAACAGGAcgcaatttttcttctttttaatgaa
aaaagaatccaatggttcttttaaaaattttacattttgagaaaattagt
tttaactagagaaacctttttgtggcacacccggtacaACATTAAGATCA
GGGTGATATTTCTTAAaactcaaagaaaaaagaatcatACTAGCAAAAAG
ATTATTCAAacttagagcaaaaaaaatttgcagtaTTGTCCATGATTATT
TTTTCAAGATAtttaagttttaaattttgacaTGTTATTTCTGGACCATC
CGGTATAACTTTTCACTGCAATTCTACAGACACCTGATCACAAACAAATC
TTCCTTGCGGCTCGTCACCAGTGCAATTCTAGTATTTTCCCTgtcaaaaa
ctatttttctttgcttactagtcagagaggaaaaatcctttttcaatcag
tgattccaactttcatatttTTCCTATCTCTTAAAAATAATGCTGGAATT
AGAGAAGGAATGTCGATATTTGACCAACTTACGATACAGTACAGCTTAGA
ACATTGTTGGCTACATTATTCAAGCTAAAATACAgccaaatatttggggg
gacctgaTATGTTTCGGGGGCCTGAAATTTCAATGGCAAGGCTGGGGGCT
GACTATTTCTTAtactatttttctttaaaatcaccacatttttatttaaa
accCTTTATTCCAGTCTATTGATTCTGTTTGTTTTCACTTATGTCTACCA
TCTTGAACTAACCGTTATACAGTAGTGTGGTGGCTGGGGGCAAATGCCCC
TCGAGCAGAGGTGTTTCAAATGGCGCCGAAAAACAAAGGACGCAAAAAGA
TACCACTGATTACTAGATATGgtattttttggccaaaaaagagagaaaac
acCCCAAAATTTTTGTCCTCACTTTGCTCGcgttatttttaaagaaatat
ttacttATCATAGCgggcgccaaaatcaaaatcttctaaaattgcctACC
CAGTTtaaccaaattttagttgacccaccacgctactgcgcATTATAGTC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050181-exon-scaffold_167-1491911889:1179361..1180762 | TCONS_00050181-exon-scaffold_167-1491911889:1179361..1180762 | Clytia hemisphaerica | exon |
| TCONS_00050181-exon-scaffold_167-1510915933:1179361..1180762 | TCONS_00050181-exon-scaffold_167-1510915933:1179361..1180762 | Clytia hemisphaerica | exon |
| TCONS_00050181-exon-scaffold_167-1575043694:1179361..1180762 | TCONS_00050181-exon-scaffold_167-1575043694:1179361..1180762 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1179361..1180762 . |
Blast
The following BLAST results are available for this feature:
|
