TCONS_00050189 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050189
Unique NameTCONS_00050189
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length241

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050189 ID=TCONS_00050189|Name=TCONS_00050189|organism=Clytia hemisphaerica|type=transcript|length=241bp
CATCATTGCAAAGGAATAAAGCCAacaaaaaactattttgaaaTGCTTCT
TACACACCCGTGCACTaagatttcatattttttaattgTCACCTACACTG
TGTGAGGTGTTTCCAATGCTTTGTATCAAAACTTCATCAACGACAGTGTA
AATCTATTAGCTTGTAATGGATACGAGGGTATTAAGCACTAGGAAATGAT
ATCATGCCCAGCTAGAGATTTTTCTGATACATTTGCAAAGA
Run BLAST on NCBI

transcript from alignment at scaffold_167:1399044..1399284

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050189 ID=TCONS_00050189|Name=TCONS_00050189|organism=Clytia hemisphaerica|type=transcript|length=241bp|location=Sequence derived from alignment at scaffold_167:1399044..1399284 (Clytia hemisphaerica)
TCTTTGCAAATGTATCAGAAAAATCTCTAGCTGGGCATGATATCATTTCC
TAGTGCTTAATACCCTCGTATCCATTACAAGCTAATAGATTTACACTGTC
GTTGATGAAGTTTTGATACAAAGCATTGGAAACACCTCACACAGTGTAGG
TGAcaattaaaaaatatgaaatcttAGTGCACGGGTGTGTAAGAAGCAtt
tcaaaatagttttttgtTGGCTTTATTCCTTTGCAATGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031794XLOC_031794Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050189-exon-scaffold_167-1491911889:1399044..1399284TCONS_00050189-exon-scaffold_167-1491911889:1399044..1399284Clytia hemisphaericaexon
TCONS_00050189-exon-scaffold_167-1510915933:1399044..1399284TCONS_00050189-exon-scaffold_167-1510915933:1399044..1399284Clytia hemisphaericaexon
TCONS_00050189-exon-scaffold_167-1575043694:1399044..1399284TCONS_00050189-exon-scaffold_167-1575043694:1399044..1399284Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1399044..1399284 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.77019	0.863109	2.0043	2.94135	0	2.8296	3.41379	4.26127	2.98342	0.92386	0	1.76841	1.76595	0	3.01552	4.31482	1.32888	5.44823	0.940877	0	0.855762	0	1.01483	0	0.950289	0.84811	0	1.29523	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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