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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050192 ID=TCONS_00050192|Name=TCONS_00050192|organism=Clytia hemisphaerica|type=transcript|length=1856bp
CTGTCTTCAAATTTCATTCCCTTTGAACAAAAACACTTTTACATTAATCa
aaatagaaacaaaatatTATGTTTGAGATTTTGCATCGATTTCCcaaaat
cagtaaaatataACCCCATGCattatagaaataaaaaatatatatttaag
acatttgttataaaaaaagccttgaaaGTTTTGTCAGAGTTTTGATATCA
CGTTAAAACGAAAGCAAATCTGATAAGACTCTCTTAAAATAAAAGTGGCT
ACTTGCAAAGcatttcttttgaaagtttcttcACACAATCAGCCCCAATG
AGAGCATTAACAATTTCAAATGCAAACTCAAAAGCAGTTCCAGGGCTTCT
ACTTGTAATAATATTTCCATCCCGTACAACACGATCTTCTGAATAAACAT
AATCACCTTCCAACTTTTCACGAACTGAAGGATATGAAGTAATACGTTTT
CCTTTAGCAATACCATGAGCTTGAAGAGCTGTTGGAGCAGCACAAATAGC
TGCAATAAAATTCCCAGCTGTTTGATGAGATTGCAATACTTCTCCAACAG
TAGAGTTCTTTGCAAATTGATTTGCACCACCAAGCCCACCAGGTAAAACA
ACAACATCAAAAAGTTTATCTTTGACACTTTGTAGATTGGTATCTGCTTT
TACAATAACGTTTCTACTGCATGTGACAATATCTGATCTCATTACACTGG
CAACTGTAACATTAACGTTTGCTCTTCGCAAGACATCAATTGAGATTATG
CCTTCCATCTCCTCAGAACCATCAGCAATTAGAACAAGTGCAGATTTCGA
CATAATTGCctttgttgaatttgtcaaCTTATTAttgatttcaacttttt
aaaatgataTACTTATTTAAATAATGCAAAGAAGATTCACAAATGTGTGT
TTTTTATCATTTGCTATAAATAATCTGAAATTTATGTCTAGCTCCTGTTT
TAGGATATCAATGATGCTCAAAAGAAACAGATAAATCTATAGCTTTTATA
GAACTATTTTCCTGTTGTAAATAACTGAAGAacttaaaaagtaaaaaagt
gataaaatagtaaaataaaATCGTAGTAAGTTGTCTTATCATTGTAAGTC
AGTATGTCTCAATCAAACGATTCATTGTCACTGTTCTCCAGGTCAGATCA
TAGAGTAACCTAGGCCTGCCTAGGCAATATTGGGGATAATCCCTAGGTTT
TGCTCTGTTCTTCTCGATAAGAGAGCAAAATTGGTTGAGTAAAACATTCC
ATCTTGTTTGATCTTCCATTTTTATCGCTAGCTTCataatatttccttta
caagaCTCTTTGATCGACTCTCGATGAACTGTCAAATTTGATAACTTGAC
TCCTTGATAGCTTTTATTGTCaattttcttgaataacttcTTGGTAATAT
GGATCAGGCAGTCCTCCCTATGATCCTCTAACGATGAACCAACCAGGTGT
TGTAGTTTGGCCATTGTCTAAATTAAACTCTTTAATTCGACGAACAGCAA
GCACAAGGTCATGTTTTGCTTTCTGAAAACCTAAGCTTAGAACTTTGGTG
TTAGAACATCAATATACATTGCTAAATGGATTGGAAACTTAGCATTTTTC
CATTATTTACTTTGCCTTGTATTTTATCCCGCTTCAAAGCCTGACTGTTT
GTTTGCGGTAGCAATTCTAAATGTTGAATGTATAAACCATAGCTGTTTAA
AACAATCTCCATAGCTTTGATCTTGTGGGCAATCCTTCTCGTTCCATAAG
ACTTGAATGGTTTTGGGTTCGATTTGTCATAAATCTCctcaaactttttg
atttggCGTAGGTGATTTGGACTCTTacgaaacaattaaaataacttgag
gAGTAC Run BLAST on NCBI protein sequence of TCONS_00050192-protein >TCONS_00050192-protein ID=TCONS_00050192-protein|Name=TCONS_00050192-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MSKSALVLIADGSEEMEGIISIDVLRRANVNVTVASVMRSDIVTCSRNVI
VKADTNLQSVKDKLFDVVVLPGGLGGANQFAKNSTVGEVLQSHQTAGNFI
AAICAAPTALQAHGIAKGKRITSYPSVREKLEGDYVYSEDRVVRDGNIIT
SRSPGTAFEFAFEIVNALIGADCVKKLSKEMLCK Run BLAST on NCBI transcript from alignment at scaffold_167:1606133..1607988 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050192 ID=TCONS_00050192|Name=TCONS_00050192|organism=Clytia hemisphaerica|type=transcript|length=1856bp|location=Sequence derived from alignment at scaffold_167:1606133..1607988 (Clytia hemisphaerica)
GTACTcctcaagttattttaattgtttcgtAAGAGTCCAAATCACCTACG
ccaaatcaaaaagtttgagGAGATTTATGACAAATCGAACCCAAAACCAT
TCAAGTCTTATGGAACGAGAAGGATTGCCCACAAGATCAAAGCTATGGAG
ATTGTTTTAAACAGCTATGGTTTATACATTCAACATTTAGAATTGCTACC
GCAAACAAACAGTCAGGCTTTGAAGCGGGATAAAATACAAGGCAAAGTAA
ATAATGGAAAAATGCTAAGTTTCCAATCCATTTAGCAATGTATATTGATG
TTCTAACACCAAAGTTCTAAGCTTAGGTTTTCAGAAAGCAAAACATGACC
TTGTGCTTGCTGTTCGTCGAATTAAAGAGTTTAATTTAGACAATGGCCAA
ACTACAACACCTGGTTGGTTCATCGTTAGAGGATCATAGGGAGGACTGCC
TGATCCATATTACCAAgaagttattcaagaaaattGACAATAAAAGCTAT
CAAGGAGTCAAGTTATCAAATTTGACAGTTCATCGAGAGTCGATCAAAGA
GtcttgtaaaggaaatattatGAAGCTAGCGATAAAAATGGAAGATCAAA
CAAGATGGAATGTTTTACTCAACCAATTTTGCTCTCTTATCGAGAAGAAC
AGAGCAAAACCTAGGGATTATCCCCAATATTGCCTAGGCAGGCCTAGGTT
ACTCTATGATCTGACCTGGAGAACAGTGACAATGAATCGTTTGATTGAGA
CATACTGACTTACAATGATAAGACAACTTACTACGATtttattttactat
tttatcacttttttactttttaagtTCTTCAGTTATTTACAACAGGAAAA
TAGTTCTATAAAAGCTATAGATTTATCTGTTTCTTTTGAGCATCATTGAT
ATCCTAAAACAGGAGCTAGACATAAATTTCAGATTATTTATAGCAAATGA
TAAAAAACACACATTTGTGAATCTTCTTTGCATTATTTAAATAAGTAtat
cattttaaaaagttgaaatcaaTAATAAGttgacaaattcaacaaagGCA
ATTATGTCGAAATCTGCACTTGTTCTAATTGCTGATGGTTCTGAGGAGAT
GGAAGGCATAATCTCAATTGATGTCTTGCGAAGAGCAAACGTTAATGTTA
CAGTTGCCAGTGTAATGAGATCAGATATTGTCACATGCAGTAGAAACGTT
ATTGTAAAAGCAGATACCAATCTACAAAGTGTCAAAGATAAACTTTTTGA
TGTTGTTGTTTTACCTGGTGGGCTTGGTGGTGCAAATCAATTTGCAAAGA
ACTCTACTGTTGGAGAAGTATTGCAATCTCATCAAACAGCTGGGAATTTT
ATTGCAGCTATTTGTGCTGCTCCAACAGCTCTTCAAGCTCATGGTATTGC
TAAAGGAAAACGTATTACTTCATATCCTTCAGTTCGTGAAAAGTTGGAAG
GTGATTATGTTTATTCAGAAGATCGTGTTGTACGGGATGGAAATATTATT
ACAAGTAGAAGCCCTGGAACTGCTTTTGAGTTTGCATTTGAAATTGTTAA
TGCTCTCATTGGGGCTGATTGTGTgaagaaactttcaaaagaaatgCTTT
GCAAGTAGCCACTTTTATTTTAAGAGAGTCTTATCAGATTTGCTTTCGTT
TTAACGTGATATCAAAACTCTGACAAAACtttcaaggctttttttataac
aaatgtcttaaatatatattttttatttctataatGCATGGGGTtatatt
ttactgattttgGGAAATCGATGCAAAATCTCAAACATAatattttgttt
ctattttGATTAATGTAAAAGTGTTTTTGTTCAAAGGGAATGAAATTTGA
AGACAG Coding sequence (CDS) from alignment at scaffold_167:1606133..1607988 >TCONS_00050192 ID=TCONS_00050192|Name=TCONS_00050192|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at scaffold_167:1606133..1607988 (Clytia hemisphaerica)
ATGTCGAAATCTGCACTTGTTCTAATTGCTGATGGTTCTGAGGAGATGGA
AGGCATAATCTCAATTGATGTCTTGCGAAGAGCAAACGTTAATGTTACAG
TTGCCAGTGTAATGAGATCAGATATTGTCACATGCAGTAGAAACGTTATT
GTAAAAGCAGATACCAATCTACAAAGTGTCAAAGATAAACTTTTTGATGT
TGTTGTTTTACCTGGTGGGCTTGGTGGTGCAAATCAATTTGCAAAGAACT
CTACTGTTGGAGAAGTATTGCAATCTCATCAAACAGCTGGGAATTTTATT
GCAGCTATTTGTGCTGCTCCAACAGCTCTTCAAGCTCATGGTATTGCTAA
AGGAAAACGTATTACTTCATATCCTTCAGTTCGTGAAAAGTTGGAAGGTG
ATTATGTTTATTCAGAAGATCGTGTTGTACGGGATGGAAATATTATTACA
AGTAGAAGCCCTGGAACTGCTTTTGAGTTTGCATTTGAAATTGTTAATGC
TCTCATTGGGGCTGATTGTGTgaagaaactttcaaaagaaatgCTTTGCA
AGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050192-exon-scaffold_167-1491911889:1606133..1607988 | TCONS_00050192-exon-scaffold_167-1491911889:1606133..1607988 | Clytia hemisphaerica | exon |
| TCONS_00050192-exon-scaffold_167-1510915933:1606133..1607988 | TCONS_00050192-exon-scaffold_167-1510915933:1606133..1607988 | Clytia hemisphaerica | exon |
| TCONS_00050192-exon-scaffold_167-1575043694:1606133..1607988 | TCONS_00050192-exon-scaffold_167-1575043694:1606133..1607988 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1606133..1607988 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00050192 vs. Swiss-Prot (Human)
Match: PARK7 (Protein/nucleic acid deglycase DJ-1 OS=Homo sapiens GN=PARK7 PE=1 SV=2) HSP 1 Score: 169.859 bits (429), Expect = 1.627e-48 Identity = 86/188 (45.74%), Postives = 125/188 (66.49%), Query Frame = -1
Query: 252 IMSKSALVLIADGSEEMEGIISIDVLRRANVNVTVASVMRSDIVTCSRNVIVKADTNLQSVKDK-LFDVVVLPGGLGGANQFAKNSTVGEVLQSHQTAGNFIAAICAAPTALQAHGIAKGKRITSYPSVREKLE--GDYVYSEDRVVRDGNIITSRSPGTAFEFAFEIVNALIGADCVKKLSKEMLCK 806
+ SK ALV++A G+EEME +I +DV+RRA + VTVA + D V CSR+V++ D +L+ K + +DVVVLPGG GA ++++ V E+L+ + IAAICA PTAL AH I G ++T++P ++K+ G Y YSE+RV +DG I+TSR PGT+FEFA IV AL G + ++ ++ K
Sbjct: 1 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
The following BLAST results are available for this feature:
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