TCONS_00050193 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050193
Unique NameTCONS_00050193
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length804

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050193 ID=TCONS_00050193|Name=TCONS_00050193|organism=Clytia hemisphaerica|type=transcript|length=804bp
CTATTTAAAAGGTTGCAGTGTGTGTGCAGGTGGGCTGAcactgaaaaaaa
acttttgacaaTTAGACTCGTAATTATCTCAATGGATTGAAGTCTCTTTG
TTATTTAAAATGCTTTTGCTAAAGACTAACGTTAGGAGTTTGAAGAAGgt
tgtctttttattttattggatggaattgagattgaaataaatattacCGT
AAAATAACGTAATCGTAAATTCGCCTGTGGAGTGTCTGTATAATTTGTTA
CTAACTGCAATGAAGTGTTGACTTTGGCTACAACTTGAACTGGCTTGCTT
GTCGTTTTGGGACCTTTTGGCAAATTGGATGATACGATTTTTAGGTGGCC
TTGAAGTATCATTTTAATCTTCAGTTTACGAAGTGTAAAGCATGCCGTTA
GATGTGTAGTTCTGTTTGAGGTTTAGTTAGTTTCAATCTAATTTTCATTC
TAAGTTGTCTTTTATctggaaatcttttttaaaatagTGACCGTTGCCAA
GGACTCCCAGGCAGCTTTATGGTATTCTTTTCTAGAATTTCTTCCTAATG
CTGTTTTAGCCATTTTGAACACTTGGGCTTTTGCCAAGGTAACTTAAAGC
TCCTCAAACATGGTGTCAAGTCCGGGGGATACTTGGGCAACAAGGGGTAt
ggggatgtgccgctggtcagggtacctttttcatcTCCATGAGTCCCAGA
TAGGGTcgcaaaatcgccaaaatagaATAACCAGTCCCTCGTAAGGTATC
TTTTTGGGGGAATATGGgaaaaaagaggaaatttttaagaatattggAAT
TTCA
Run BLAST on NCBI

transcript from alignment at scaffold_167:1651127..1651930

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050193 ID=TCONS_00050193|Name=TCONS_00050193|organism=Clytia hemisphaerica|type=transcript|length=804bp|location=Sequence derived from alignment at scaffold_167:1651127..1651930 (Clytia hemisphaerica)
TGAAATTccaatattcttaaaaatttcctcttttttcCCATATTCCCCCA
AAAAGATACCTTACGAGGGACTGGTTATtctattttggcgattttgcgAC
CCTATCTGGGACTCATGGAgatgaaaaaggtaccctgaccagcggcacat
ccccaTACCCCTTGTTGCCCAAGTATCCCCCGGACTTGACACCATGTTTG
AGGAGCTTTAAGTTACCTTGGCAAAAGCCCAAGTGTTCAAAATGGCTAAA
ACAGCATTAGGAAGAAATTCTAGAAAAGAATACCATAAAGCTGCCTGGGA
GTCCTTGGCAACGGTCActattttaaaaaagatttccagATAAAAGACAA
CTTAGAATGAAAATTAGATTGAAACTAACTAAACCTCAAACAGAACTACA
CATCTAACGGCATGCTTTACACTTCGTAAACTGAAGATTAAAATGATACT
TCAAGGCCACCTAAAAATCGTATCATCCAATTTGCCAAAAGGTCCCAAAA
CGACAAGCAAGCCAGTTCAAGTTGTAGCCAAAGTCAACACTTCATTGCAG
TTAGTAACAAATTATACAGACACTCCACAGGCGAATTTACGATTACGTTA
TTTTACGgtaatatttatttcaatctcaattccatccaataaaataaaaa
gacaacCTTCTTCAAACTCCTAACGTTAGTCTTTAGCAAAAGCATTTTAA
ATAACAAAGAGACTTCAATCCATTGAGATAATTACGAGTCTAAttgtcaa
aagttttttttcagtgTCAGCCCACCTGCACACACACTGCAACCTTTTAA
ATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031798XLOC_031798Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050193-exon-scaffold_167-1491911889:1651127..1651930TCONS_00050193-exon-scaffold_167-1491911889:1651127..1651930Clytia hemisphaericaexon
TCONS_00050193-exon-scaffold_167-1510915933:1651127..1651930TCONS_00050193-exon-scaffold_167-1510915933:1651127..1651930Clytia hemisphaericaexon
TCONS_00050193-exon-scaffold_167-1575043694:1651127..1651930TCONS_00050193-exon-scaffold_167-1575043694:1651127..1651930Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1651127..1651930 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0633444	0.290726	0.0681866	0.133283	0.804096	0.254163	0	0.502372	0.22865	0.0752599	0.1304	0.504685	0.348932	0.712015	0.248788	0.112302	0.0447614	0.230851	0.0633842	0	0.291384	0.674874	0	0.063041	0.192055	0.173269	0.082382	0	0	0.0674277
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050193 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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