TCONS_00050199 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050199
Unique NameTCONS_00050199
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length819

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050199 ID=TCONS_00050199|Name=TCONS_00050199|organism=Clytia hemisphaerica|type=transcript|length=819bp
CTAAGGGCGAAAAGCGGGCTCTGGGAAGAAACAGCACTCCGTTACGGGGC
CTATCCGCAGGTGAGGGTTGTTTCTCCCGAGATTACGTTCCGTCCGGACT
GTAGGAATCTCCCTCTtggtaaacaaaaacaaagtagAACCTAACCGATT
GAGATACTAACATTCAGCAGGAGATTCCCCGAAAATGTAAACATAGGACA
ATGTTGCACAATGGAACGACTTCTTTTTCCAAATATAAACAATCGAATGT
CTCCCAAGagacactgcaatgacttccaTTGTAaaaatacaatcgaacgt
tGAAAATAACAAAGAAGATTTTACAACCCAGCCTGGCCACGGTCGAGTAA
TTTTCGTTACGAATTTGTAGCAGACTTGAATTTGTTGATATCATTCTTCA
ATAACTGGCAGTGGGAGTGCAAAGTTCTTGTTGAATCACATTACGGTaag
tttgtttgattttttttataaatttttcagcTTTTGAGTTTTCCTgcaac
agaaagaaaaaaagttcaaagtttTAGAATTGAATGGAGATAAGATGAAT
TGGTACATACTTTTTGCCCCCCTTTTTGTCTAACTTCCAGCAGTGTTATT
AAGGGTTCGAATTTTCGATTTACTAAAAACCATATAATCTCAACGTCCAG
ATAAGAAACGCAtgagaaaattgttttttatctcGANATATAATCTCAAC
GTCCAGATAAGAAACGCAtgagaaaattgttttttatctcGAGAAATTAG
AAAAGtttcggcaaaaaaaatgcACCAGATTTCATTAGAAATATAGGGAA
ATCCGTTTTGATATTGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_167:1846737..1847555

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050199 ID=TCONS_00050199|Name=TCONS_00050199|organism=Clytia hemisphaerica|type=transcript|length=819bp|location=Sequence derived from alignment at scaffold_167:1846737..1847555 (Clytia hemisphaerica)
CACCAATATCAAAACGGATTTCCCTATATTTCTAATGAAATCTGGTgcat
tttttttgccgaaaCTTTTCTAATTTCTCgagataaaaaacaattttctc
aTGCGTTTCTTATCTGGACGTTGAGATTATATNTCgagataaaaaacaat
tttctcaTGCGTTTCTTATCTGGACGTTGAGATTATATGGTTTTTAGTAA
ATCGAAAATTCGAACCCTTAATAACACTGCTGGAAGTTAGACAAAAAGGG
GGGCAAAAAGTATGTACCAATTCATCTTATCTCCATTCAATTCTAaaact
ttgaactttttttctttctgttgcAGGAAAACTCAAAAgctgaaaaattt
ataaaaaaaatcaaacaaacttACCGTAATGTGATTCAACAAGAACTTTG
CACTCCCACTGCCAGTTATTGAAGAATGATATCAACAAATTCAAGTCTGC
TACAAATTCGTAACGAAAATTACTCGACCGTGGCCAGGCTGGGTTGTAAA
ATCTTCTTTGTTATTTTCaacgttcgattgtattttTACAAtggaagtca
ttgcagtgtctCTTGGGAGACATTCGATTGTTTATATTTGGAAAAAGAAG
TCGTTCCATTGTGCAACATTGTCCTATGTTTACATTTTCGGGGAATCTCC
TGCTGAATGTTAGTATCTCAATCGGTTAGGTTctactttgtttttgttta
ccaAGAGGGAGATTCCTACAGTCCGGACGGAACGTAATCTCGGGAGAAAC
AACCCTCACCTGCGGATAGGCCCCGTAACGGAGTGCTGTTTCTTCCCAGA
GCCCGCTTTTCGCCCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031804XLOC_031804Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050199-exon-scaffold_167-1491911889:1846737..1847555TCONS_00050199-exon-scaffold_167-1491911889:1846737..1847555Clytia hemisphaericaexon
TCONS_00050199-exon-scaffold_167-1510915933:1846737..1847555TCONS_00050199-exon-scaffold_167-1510915933:1846737..1847555Clytia hemisphaericaexon
TCONS_00050199-exon-scaffold_167-1575043694:1846737..1847555TCONS_00050199-exon-scaffold_167-1575043694:1846737..1847555Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1846737..1847555 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
73.3982	76.8494	73.1616	80.9189	0.313729	0.867696	0.672967	0.840032	0.254356	0.364245	0.294621	0.116203	0.154722	0.281191	0	0.106324	0.218303	0.179003	0.185477	0.0869986	0.506094	0.32914	25.4071	19.8249	45.5217	29.3139	2.07348	1.87243	12.0069	13.8026
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050199 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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