TCONS_00050200 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050200
Unique NameTCONS_00050200
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050200 ID=TCONS_00050200|Name=TCONS_00050200|organism=Clytia hemisphaerica|type=transcript|length=634bp
CTTCGTGGAGACGACTCAACTATACCTaaatgttaattttattttccgTA
TGGATGGTCTTGATTTTTAACATTATCTATAAAGTACTTTCTGGCGTGGC
ATAGCCGATAATACTGACGTTCAAATACCTTGACGTTGAAATATCGCttt
gtgaaaatgaaataaaggaAGAATACGTTTTTTTTTCCGCACAGAGCAGC
TTTGATAAGCAACGTGTGGAATATGTAGTATGCTTTTGATTGGCAGAGCa
actttttgaacaattttcaagATAAAGGAATCAATGAGAGTATAAGTATC
AGAGTATAAGATCGtcttcagacgttacggttcagtatcgctccgaaacg
aaatggtTCCAAAACACTGTCTGAAGGTCGAAATTCGATACGTccaaaaa
gaagacgttacaaagaaaacagatcgaaacggtttcgttccactattttc
atcggaacagATTACTTTGAAACGCTCCGAAATCAGTATGAACACTTCCT
ATCCGTGACAAATACGAAACCGTAACGCCTGAACATAGTCTAACTCGTAA
CTGTGGTCGGAGTTTATTGCCACATTCATTTACGACGCGGCATTTAAAGA
CTGACCATTTTGTAAATCAAGACAAACGATCGAA
Run BLAST on NCBI

transcript from alignment at scaffold_167:1854596..1855229

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050200 ID=TCONS_00050200|Name=TCONS_00050200|organism=Clytia hemisphaerica|type=transcript|length=634bp|location=Sequence derived from alignment at scaffold_167:1854596..1855229 (Clytia hemisphaerica)
TTCGATCGTTTGTCTTGATTTACAAAATGGTCAGTCTTTAAATGCCGCGT
CGTAAATGAATGTGGCAATAAACTCCGACCACAGTTACGAGTTAGACTAT
GTTCAGGCGTTACGGTTTCGTATTTGTCACGGATAGGAAGTGTTCATACT
GATTTCGGAGCGTTTCAAAGTAATctgttccgatgaaaatagtggaacga
aaccgtttcgatctgttttctttgtaacgtcttctttttggACGTATCGA
ATTTCGACCTTCAGACAGTGTTTTGGAaccatttcgtttcggagcgatac
tgaaccgtaacgtctgaagaCGATCTTATACTCTGATACTTATACTCTCA
TTGATTCCTTTATcttgaaaattgttcaaaaagttGCTCTGCCAATCAAA
AGCATACTACATATTCCACACGTTGCTTATCAAAGCTGCTCTGTGCGGAA
AAAAAAACGTATTCTtcctttatttcattttcacaaaGCGATATTTCAAC
GTCAAGGTATTTGAACGTCAGTATTATCGGCTATGCCACGCCAGAAAGTA
CTTTATAGATAATGTTAAAAATCAAGACCATCCATAcggaaaataaaatt
aacatttAGGTATAGTTGAGTCGTCTCCACGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031805XLOC_031805Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050200-exon-scaffold_167-1491911889:1854596..1855229TCONS_00050200-exon-scaffold_167-1491911889:1854596..1855229Clytia hemisphaericaexon
TCONS_00050200-exon-scaffold_167-1510915933:1854596..1855229TCONS_00050200-exon-scaffold_167-1510915933:1854596..1855229Clytia hemisphaericaexon
TCONS_00050200-exon-scaffold_167-1575043694:1854596..1855229TCONS_00050200-exon-scaffold_167-1575043694:1854596..1855229Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1854596..1855229 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.166954	0	0	0	0.112573	0	0.536615	0.703321	0.844134	1.39413	1.01488	0.778333	0.166554	0	0.142203	0.0508686	2.06797	2.82614	0.621166	0	1.37208	1.29913	0.191426	0.522103	0.448128	0.479932	1.48803	2.0767	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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