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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050202 ID=TCONS_00050202|Name=TCONS_00050202|organism=Clytia hemisphaerica|type=transcript|length=1687bp
gagctttcgggaaataaagtagatgttaaagttttgcatgcagcaaagat
ttttgtaaaacctaTTTTCTTCtagatttgagaaaatttttagatttgat
cgacgttttgggggccagaTACTGTAGCTCtcatgattttcattttttat
aaatctatttgATCATTTAGATTTAGAAAAAGTGTTTGCCAAAGGTTTAT
TGAATTCACAGACCTTGAAGCGAAGAAAAAATTGGTTGTTTCCGATTCTG
AGGAAACTTATCAAagatgttttcaatgaaaaaagcaaTGTTAACAGAAG
ATGAAATCAAATCAGGAATACCGCAAATTCTTGATCTTAATATGGCATTT
TTCACGCAACAATGTCTTTACACCATGGTCAAATTGAGGATTCCCGATGT
CATTGGAGCTGAAACTTTATCCATGAAAGAGATTTGCCAACGCCTTGGAG
AGAACGTTGACCAAGATTTGCTGTTTCGTCAAATGAGACTTTTAGCTGAA
GTTGGAATTTTCGTTGAAACAGCAAGCGAAGATGGGGAAAACCAATATTG
TTATAGTCTTGCATTACAAGGGAAGTTACTGCAGACGGGGGTTGAAGGCC
AACCTAGTATGGCTTGTGGTGTTCATCATTTGTCGGAACAACCTGCATGG
AAAGCCTGGGCGCCGTTGCCAGAAATCACCTCAGGTCAAGCCAAAGGTGA
AGTTCCATTCGAAAGGGCTAACGGACAAGGTGTCGACCACTATTATAAAG
AACACCCTGAGTCTGCAGAACATTTCAACAAATTCATGTCCTTCTTTTCG
TATAGTGAATTGAGAGGCATCTTAAATGATTTTGATTGGTCGGTTTTCAA
TGGGAAAATAGTTTGCGACATCGCTGGTTGCTATGGGGTTGTTATGAAAG
CGGTCAAAGAGAAATTCCCTGACATTACCACCATAAACTTTGATCTTCCA
GAGGTAATTGAGAAAGCTGAGTCGATCCCAGGCGTTCAAATGGTTGCTGG
AGATATGTTCGACTCTTCGACGATCCCATCATGCAATGTTGTTTTCATGA
AACACATTCTTCACGATTGGTATGATGAGGATTGCATCAAGATCATGAAA
TCTTTACACAAAGCTCTCCCTTCGGATGGCAAAGTTGTGATTTGCGATGC
AATCCTTCCTAAGCCAGGTGTAACGAATCCAattgcgaaaagtcaaaaaa
atttggatatGTTGATGGCGATATTCGGTGGTAAAGAGCGTAACCAAGAT
CAATGGAGAGCTATCTTTGAAGCATCTGGATGGAAGATTGATAGTGTTTT
ACCGATGACAAGCGGTGGTCCTTTAACAGGAATCATAACCACTTCCAAAG
TGTGAAATCTTTTGATGTCAtcgagaaaatattgaaaaaccaGACTGAAA
TTGATTATGATTATAAATAGATTATTTTTATATTCACGGATCAAAAATTA
TAATActgcatttgaaaaaaattgttatcaATCTTATTTCAGTGTTTAAG
AAATCGCGTTTTGAATTTCTATCCCACTTTTTCAGAAGACTGAATTAATT
GAATCGCCCTGTAATTAGAGAAATGTATTCAACTTtcttttcgagcgcgc
gctacatttttatgacgtagtCTTTTtcccaagcaaaaaggattgaagcc
aaacgGTGCGATTGCAGCGCGCGTCAGTGCAGACCGG Run BLAST on NCBI protein sequence of TCONS_00050202-protein >TCONS_00050202-protein ID=TCONS_00050202-protein|Name=TCONS_00050202-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp
MFSMKKAMLTEDEIKSGIPQILDLNMAFFTQQCLYTMVKLRIPDVIGAET
LSMKEICQRLGENVDQDLLFRQMRLLAEVGIFVETASEDGENQYCYSLAL
QGKLLQTGVEGQPSMACGVHHLSEQPAWKAWAPLPEITSGQAKGEVPFER
ANGQGVDHYYKEHPESAEHFNKFMSFFSYSELRGILNDFDWSVFNGKIVC
DIAGCYGVVMKAVKEKFPDITTINFDLPEVIEKAESIPGVQMVAGDMFDS
STIPSCNVVFMKHILHDWYDEDCIKIMKSLHKALPSDGKVVICDAILPKP
GVTNPIAKSQKNLDMLMAIFGGKERNQDQWRAIFEASGWKIDSVLPMTSG
GPLTGIITTSKV Run BLAST on NCBI transcript from alignment at scaffold_167:1876061..1877747 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050202 ID=TCONS_00050202|Name=TCONS_00050202|organism=Clytia hemisphaerica|type=transcript|length=1687bp|location=Sequence derived from alignment at scaffold_167:1876061..1877747 (Clytia hemisphaerica)
CCGGTCTGCACTGACGCGCGCTGCAATCGCACcgtttggcttcaatcctt
tttgcttgggaAAAAGactacgtcataaaaatgtagcgcgcgctcgaaaa
gaAAGTTGAATACATTTCTCTAATTACAGGGCGATTCAATTAATTCAGTC
TTCTGAAAAAGTGGGATAGAAATTCAAAACGCGATTTCTTAAACACTGAA
ATAAGATtgataacaatttttttcaaatgcagTATTATAATTTTTGATCC
GTGAATATAAAAATAATCTATTTATAATCATAATCAATTTCAGTCtggtt
tttcaatattttctcgaTGACATCAAAAGATTTCACACTTTGGAAGTGGT
TATGATTCCTGTTAAAGGACCACCGCTTGTCATCGGTAAAACACTATCAA
TCTTCCATCCAGATGCTTCAAAGATAGCTCTCCATTGATCTTGGTTACGC
TCTTTACCACCGAATATCGCCATCAACatatccaaatttttttgactttt
cgcaatTGGATTCGTTACACCTGGCTTAGGAAGGATTGCATCGCAAATCA
CAACTTTGCCATCCGAAGGGAGAGCTTTGTGTAAAGATTTCATGATCTTG
ATGCAATCCTCATCATACCAATCGTGAAGAATGTGTTTCATGAAAACAAC
ATTGCATGATGGGATCGTCGAAGAGTCGAACATATCTCCAGCAACCATTT
GAACGCCTGGGATCGACTCAGCTTTCTCAATTACCTCTGGAAGATCAAAG
TTTATGGTGGTAATGTCAGGGAATTTCTCTTTGACCGCTTTCATAACAAC
CCCATAGCAACCAGCGATGTCGCAAACTATTTTCCCATTGAAAACCGACC
AATCAAAATCATTTAAGATGCCTCTCAATTCACTATACGAAAAGAAGGAC
ATGAATTTGTTGAAATGTTCTGCAGACTCAGGGTGTTCTTTATAATAGTG
GTCGACACCTTGTCCGTTAGCCCTTTCGAATGGAACTTCACCTTTGGCTT
GACCTGAGGTGATTTCTGGCAACGGCGCCCAGGCTTTCCATGCAGGTTGT
TCCGACAAATGATGAACACCACAAGCCATACTAGGTTGGCCTTCAACCCC
CGTCTGCAGTAACTTCCCTTGTAATGCAAGACTATAACAATATTGGTTTT
CCCCATCTTCGCTTGCTGTTTCAACGAAAATTCCAACTTCAGCTAAAAGT
CTCATTTGACGAAACAGCAAATCTTGGTCAACGTTCTCTCCAAGGCGTTG
GCAAATCTCTTTCATGGATAAAGTTTCAGCTCCAATGACATCGGGAATCC
TCAATTTGACCATGGTGTAAAGACATTGTTGCGTGAAAAATGCCATATTA
AGATCAAGAATTTGCGGTATTCCTGATTTGATTTCATCTTCTGTTAACAt
tgcttttttcattgaaaacatctTTGATAAGTTTCCTCAGAATCGGAAAC
AACCAATTTTTTCTTCGCTTCAAGGTCTGTGAATTCAATAAACCTTTGGC
AAACACTTTTTCTAAATCTAAATGATcaaatagatttataaaaaatgaaa
atcatgaGAGCTACAGTAtctggcccccaaaacgtcgatcaaatctaaaa
attttctcaaatctaGAAGAAAAtaggttttacaaaaatctttgctgcat
gcaaaactttaacatctactttatttcccgaaagctc Coding sequence (CDS) from alignment at scaffold_167:1876061..1877747 >TCONS_00050202 ID=TCONS_00050202|Name=TCONS_00050202|organism=Clytia hemisphaerica|type=CDS|length=1089bp|location=Sequence derived from alignment at scaffold_167:1876061..1877747 (Clytia hemisphaerica)
TCACACTTTGGAAGTGGTTATGATTCCTGTTAAAGGACCACCGCTTGTCA
TCGGTAAAACACTATCAATCTTCCATCCAGATGCTTCAAAGATAGCTCTC
CATTGATCTTGGTTACGCTCTTTACCACCGAATATCGCCATCAACatatc
caaatttttttgacttttcgcaatTGGATTCGTTACACCTGGCTTAGGAA
GGATTGCATCGCAAATCACAACTTTGCCATCCGAAGGGAGAGCTTTGTGT
AAAGATTTCATGATCTTGATGCAATCCTCATCATACCAATCGTGAAGAAT
GTGTTTCATGAAAACAACATTGCATGATGGGATCGTCGAAGAGTCGAACA
TATCTCCAGCAACCATTTGAACGCCTGGGATCGACTCAGCTTTCTCAATT
ACCTCTGGAAGATCAAAGTTTATGGTGGTAATGTCAGGGAATTTCTCTTT
GACCGCTTTCATAACAACCCCATAGCAACCAGCGATGTCGCAAACTATTT
TCCCATTGAAAACCGACCAATCAAAATCATTTAAGATGCCTCTCAATTCA
CTATACGAAAAGAAGGACATGAATTTGTTGAAATGTTCTGCAGACTCAGG
GTGTTCTTTATAATAGTGGTCGACACCTTGTCCGTTAGCCCTTTCGAATG
GAACTTCACCTTTGGCTTGACCTGAGGTGATTTCTGGCAACGGCGCCCAG
GCTTTCCATGCAGGTTGTTCCGACAAATGATGAACACCACAAGCCATACT
AGGTTGGCCTTCAACCCCCGTCTGCAGTAACTTCCCTTGTAATGCAAGAC
TATAACAATATTGGTTTTCCCCATCTTCGCTTGCTGTTTCAACGAAAATT
CCAACTTCAGCTAAAAGTCTCATTTGACGAAACAGCAAATCTTGGTCAAC
GTTCTCTCCAAGGCGTTGGCAAATCTCTTTCATGGATAAAGTTTCAGCTC
CAATGACATCGGGAATCCTCAATTTGACCATGGTGTAAAGACATTGTTGC
GTGAAAAATGCCATATTAAGATCAAGAATTTGCGGTATTCCTGATTTGAT
TTCATCTTCTGTTAACAttgcttttttcattgaaaacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050202-exon-scaffold_167-1491911889:1876061..1877747 | TCONS_00050202-exon-scaffold_167-1491911889:1876061..1877747 | Clytia hemisphaerica | exon |
| TCONS_00050202-exon-scaffold_167-1510915933:1876061..1877747 | TCONS_00050202-exon-scaffold_167-1510915933:1876061..1877747 | Clytia hemisphaerica | exon |
| TCONS_00050202-exon-scaffold_167-1575043694:1876061..1877747 | TCONS_00050202-exon-scaffold_167-1575043694:1876061..1877747 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1876061..1877747 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008171 | O-methyltransferase activity |
| GO:0008168 | methyltransferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008168 |
methyltransferase activity |
| molecular_function |
GO:0008171 |
O-methyltransferase activity |
Blast
The following BLAST results are available for this feature:
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