TCONS_00050212 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050212
Unique NameTCONS_00050212
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1235

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050212 ID=TCONS_00050212|Name=TCONS_00050212|organism=Clytia hemisphaerica|type=transcript|length=1235bp
AGAAGGCTTATTGTACCACGACCGAAAAGCCCATCTTGAAGAGAAAGGAA
TCACTGTTATCACTGGCAAGTCTGCAATCGAAAGTTTGAAGATGCCATGG
ATAAGACAGCACTTCAAAGCGATCTTCTTCGACGAATGGAATGAAGATGT
TCAACAAAAAATTGACGTTAAATGGTTGGATGATCTTCCCGTGTGTTGGA
TCGCACCTAACTCGGCTTACCGTGCGAAATCAAAAGAATTGAGTttgctt
aaaattcatttcaaggGTTTTGAAATCATTCACTTAACTTGCAATCTGAG
AAATACAAAAGAGATTGTGAAGAAAACGAAAAGTATAGCTGAAACACAAC
TCTACGAATATGCACATGGTGTTTCAGAAACTCCCGTGAATTTCCTTATT
GGAAGTCCAGCCGTGCATGTATCCTCTTTCGGCGAAGCCATATTTGAAGA
GCGCTTACTGCCAAAACCAAAGGAAGGATTTCTTCTTGTTTCAGACAGTG
TTAATTTCCCTGTTCCACCAAACGAACAAGTTAAATTCTTCCATTCCTCA
AGAAACGATTTCAACAATGATGAAAACCCATGCGACTTCCTACGTCAAGG
AAATGTTCTAGTTGTCTCTCGAAATTACGTATCGGGCTTCGAATCGCCGG
TTGTGGTTTACGAAAACGCTGAAATGTTGGAGGAAGATCTGGAGCACCAC
GAATGTAACATTTCAATGCGATGCACCACAAAACTTTACGTTGTTGGACA
AAATTCTGATTTAAATGGAACCACACCCTATGTTGAGATTGTTAGCCTGC
TCCAATCATATCTTGAAGATAGCCAACTTCTTAGTCGATTCAAGATTTGT
GCAAGTAATTACTTTTTAGACCATGTCAAACATTTTGAACGACGTGACAT
TTTCACGCATATTTTGCCGGTCCTTAAAGAAACAGTTGCAAATCTTTCAG
ACGTCGGTGACCAGCAGAATTTCTCAGCAGAACCTATCGTAAACGTATTA
AGTCCATTTTTAAGCGTCGTAAGTTCATTGCTCATGACAGAACGATTATC
AAACGAGCATATACGAGACCTTTTGAGAATGGATTGGTTCATTCAGAGAA
CCATCGAATTAGACCTCCATCACTGCACCACCGTTCAGCAATTCCAAGAC
ACTTTTGAACGTACTTTAAAGTTTCAATCGTTGCTCAGGACCTTTGACGA
ATGTGCCTTTGGAAAGCTGAATAGATACACTCTGC
Run BLAST on NCBI

protein sequence of TCONS_00050212-protein

>TCONS_00050212-protein ID=TCONS_00050212-protein|Name=TCONS_00050212-protein|organism=Clytia hemisphaerica|type=polypeptide|length=411bp
EGLLYHDRKAHLEEKGITVITGKSAIESLKMPWIRQHFKAIFFDEWNEDV
QQKIDVKWLDDLPVCWIAPNSAYRAKSKELSLLKIHFKGFEIIHLTCNLR
NTKEIVKKTKSIAETQLYEYAHGVSETPVNFLIGSPAVHVSSFGEAIFEE
RLLPKPKEGFLLVSDSVNFPVPPNEQVKFFHSSRNDFNNDENPCDFLRQG
NVLVVSRNYVSGFESPVVVYENAEMLEEDLEHHECNISMRCTTKLYVVGQ
NSDLNGTTPYVEIVSLLQSYLEDSQLLSRFKICASNYFLDHVKHFERRDI
FTHILPVLKETVANLSDVGDQQNFSAEPIVNVLSPFLSVVSSLLMTERLS
NEHIRDLLRMDWFIQRTIELDLHHCTTVQQFQDTFERTLKFQSLLRTFDE
CAFGKLNRYTL
Run BLAST on NCBI

transcript from alignment at scaffold_168:85487..87469+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050212 ID=TCONS_00050212|Name=TCONS_00050212|organism=Clytia hemisphaerica|type=transcript|length=1983bp|location=Sequence derived from alignment at scaffold_168:85487..87469+ (Clytia hemisphaerica)
AGAAGGCTTATTGTACCACGACCGAAAAGCCCATCTTGAAGAGAAAGGAA
TCACTGTTATCACTGGCAAGTCTGCAATCGTAAGTCAATCATTTGTATTT
TGTCGACCTgtgcattttcatttttgatggtTGTGTCCAAAATTACGTGA
ATTTTTACTATATCCTTTTTTGATTGTCAAGACTTAAAATTTGGCATATA
GCTTTTTAAAATTGGTACAGTGGTTTTCTTGTGCGCTATTCTATTCGGAA
AACcacattttcacatttttaatgGCTTTTACGACACAATGATCTCAGCt
gatttttatcaattatcCTAACAAAAGTTATGgcgaaaaataggaaaata
gtAATTCTGAgcgatttttcaaaaagtttttagtaaaaaataaattttta
aaaaataatttaatttgatACCCCATTTTTGGCATGTTTTGGGCTTTTTC
AAAAGCAAATTTTTGGCTTCAAAAGTTCATGACTTGAGAACCACTgagca
aaattcaaaaagtttacaattataaaagaattcattaaaatgacaatatt
tgccgtttttgctgatttagaaaataataatattgtatGTATGcaaagtt
aattttttgtcaagtAAATAGCAAAATAATTCCACAGGTCTTATCTATTA
CCCATCTTTAGAATTTTTAGTTCTATTCCAGGGCCCaagatggggggggg
ggcacctaCAATTTTGGGGGGCCATATTCTGTAACTAGTGAAAGGAAACA
ACCAGAACTGCGACAAAAGACATGCCAAAAAGAATATTCTAAAATTATGC
TGAGAACTTACCTTGTTTCTTTTGCAGGAAAGTTTGAAGATGCCATGGAT
AAGACAGCACTTCAAAGCGATCTTCTTCGACGAATGGAATGAAGATGTTC
AACAAAAAATTGACGTTAAATGGTTGGATGATCTTCCCGTGTGTTGGATC
GCACCTAACTCGGCTTACCGTGCGAAATCAAAAGAATTGAGTttgcttaa
aattcatttcaaggGTTTTGAAATCATTCACTTAACTTGCAATCTGAGAA
ATACAAAAGAGATTGTGAAGAAAACGAAAAGTATAGCTGAAACACAACTC
TACGAATATGCACATGGTGTTTCAGAAACTCCCGTGAATTTCCTTATTGG
AAGTCCAGCCGTGCATGTATCCTCTTTCGGCGAAGCCATATTTGAAGAGC
GCTTACTGCCAAAACCAAAGGAAGGATTTCTTCTTGTTTCAGACAGTGTT
AATTTCCCTGTTCCACCAAACGAACAAGTTAAATTCTTCCATTCCTCAAG
AAACGATTTCAACAATGATGAAAACCCATGCGACTTCCTACGTCAAGGAA
ATGTTCTAGTTGTCTCTCGAAATTACGTATCGGGCTTCGAATCGCCGGTT
GTGGTTTACGAAAACGCTGAAATGTTGGAGGAAGATCTGGAGCACCACGA
ATGTAACATTTCAATGCGATGCACCACAAAACTTTACGTTGTTGGACAAA
ATTCTGATTTAAATGGAACCACACCCTATGTTGAGATTGTTAGCCTGCTC
CAATCATATCTTGAAGATAGCCAACTTCTTAGTCGATTCAAGATTTGTGC
AAGTAATTACTTTTTAGACCATGTCAAACATTTTGAACGACGTGACATTT
TCACGCATATTTTGCCGGTCCTTAAAGAAACAGTTGCAAATCTTTCAGAC
GTCGGTGACCAGCAGAATTTCTCAGCAGAACCTATCGTAAACGTATTAAG
TCCATTTTTAAGCGTCGTAAGTTCATTGCTCATGACAGAACGATTATCAA
ACGAGCATATACGAGACCTTTTGAGAATGGATTGGTTCATTCAGAGAACC
ATCGAATTAGACCTCCATCACTGCACCACCGTTCAGCAATTCCAAGACAC
TTTTGAACGTACTTTAAAGTTTCAATCGTTGCTCAGGACCTTTGACGAAT
GTGCCTTTGGAAAGCTGAATAGATACACTCTGC

Coding sequence (CDS) from alignment at scaffold_168:85487..87469+

>TCONS_00050212 ID=TCONS_00050212|Name=TCONS_00050212|organism=Clytia hemisphaerica|type=CDS|length=2466bp|location=Sequence derived from alignment at scaffold_168:85487..87469+ (Clytia hemisphaerica)
GAAGGCTTATTGTACCACGACCGAAAAGCCCATCTTGAAGAGAAAGGAAT
CACTGTTATCACTGGCAAGTCTGCAATCGAAAGTTTGAAGATGCCATGGA
TAAGACAGCACTTCAAAGCGATCTTCTTCGACGAATGGAATGAAGATGTT
CAACAAAAAATTGACGTTAAATGGTTGGATGATCTTCCCGTGTGTTGGAT
CGCACCTAACTCGGCTTACCGTGCGAAATCAAAAGAATTGAGTttgctta
aaattcatttcaaggGTTTTGAAATCATTCACTTAACTTGCAATCTGAGA
AATACAAAAGAGATTGTGAAGAAAACGAAAAGTATAGCTGAAACACAACT
CTACGAATATGCACATGGTGTTTCAGAAACTCCCGTGAATTTCCTTATTG
GAAGTCCAGCCGTGCATGTATCCTCTTTCGGCGAAGCCATATTTGAAGAG
CGCTTACTGCCAAAACCAAAGGAAGGATTTCTTCTTGTTTCAGACAGTGT
TAATTTCCCTGTTCCACCAAACGAACAAGTTAAATTCTTCCATTCCTCAA
GAAACGATTTCAACAATGATGAAAACCCATGCGACTTCCTACGTCAAGGA
AATGTTCTAGTTGTCTCTCGAAATTACGTATCGGGCTTCGAATCGCCGGT
TGTGGTTTACGAAAACGCTGAAATGTTGGAGGAAGATCTGGAGCACCACG
AATGTAACATTTCAATGCGATGCACCACAAAACTTTACGTTGTTGGACAA
AATTCTGATTTAAATGGAACCACACCCTATGTTGAGATTGTTAGCCTGCT
CCAATCATATCTTGAAGATAGCCAACTTCTTAGTCGATTCAAGATTTGTG
CAAGTAATTACTTTTTAGACCATGTCAAACATTTTGAACGACGTGACATT
TTCACGCATATTTTGCCGGTCCTTAAAGAAACAGTTGCAAATCTTTCAGA
CGTCGGTGACCAGCAGAATTTCTCAGCAGAACCTATCGTAAACGTATTAA
GTCCATTTTTAAGCGTCGTAAGTTCATTGCTCATGACAGAACGATTATCA
AACGAGCATATACGAGACCTTTTGAGAATGGATTGGTTCATTCAGAGAAC
CATCGAATTAGACCTCCATCACTGCACCACCGTTCAGCAATTCCAAGACA
CTTTTGAACGTACTTTAAAGTTTCAATCGTTGCTCAGGACCTTTGACGAA
TGTGCCTTTGGAAAGCTGAATAGATACACTCTGGAAGGCTTATTGTACCA
CGACCGAAAAGCCCATCTTGAAGAGAAAGGAATCACTGTTATCACTGGCA
AGTCTGCAATCGAAAGTTTGAAGATGCCATGGATAAGACAGCACTTCAAA
GCGATCTTCTTCGACGAATGGAATGAAGATGTTCAACAAAAAATTGACGT
TAAATGGTTGGATGATCTTCCCGTGTGTTGGATCGCACCTAACTCGGCTT
ACCGTGCGAAATCAAAAGAATTGAGTttgcttaaaattcatttcaaggGT
TTTGAAATCATTCACTTAACTTGCAATCTGAGAAATACAAAAGAGATTGT
GAAGAAAACGAAAAGTATAGCTGAAACACAACTCTACGAATATGCACATG
GTGTTTCAGAAACTCCCGTGAATTTCCTTATTGGAAGTCCAGCCGTGCAT
GTATCCTCTTTCGGCGAAGCCATATTTGAAGAGCGCTTACTGCCAAAACC
AAAGGAAGGATTTCTTCTTGTTTCAGACAGTGTTAATTTCCCTGTTCCAC
CAAACGAACAAGTTAAATTCTTCCATTCCTCAAGAAACGATTTCAACAAT
GATGAAAACCCATGCGACTTCCTACGTCAAGGAAATGTTCTAGTTGTCTC
TCGAAATTACGTATCGGGCTTCGAATCGCCGGTTGTGGTTTACGAAAACG
CTGAAATGTTGGAGGAAGATCTGGAGCACCACGAATGTAACATTTCAATG
CGATGCACCACAAAACTTTACGTTGTTGGACAAAATTCTGATTTAAATGG
AACCACACCCTATGTTGAGATTGTTAGCCTGCTCCAATCATATCTTGAAG
ATAGCCAACTTCTTAGTCGATTCAAGATTTGTGCAAGTAATTACTTTTTA
GACCATGTCAAACATTTTGAACGACGTGACATTTTCACGCATATTTTGCC
GGTCCTTAAAGAAACAGTTGCAAATCTTTCAGACGTCGGTGACCAGCAGA
ATTTCTCAGCAGAACCTATCGTAAACGTATTAAGTCCATTTTTAAGCGTC
GTAAGTTCATTGCTCATGACAGAACGATTATCAAACGAGCATATACGAGA
CCTTTTGAGAATGGATTGGTTCATTCAGAGAACCATCGAATTAGACCTCC
ATCACTGCACCACCGTTCAGCAATTCCAAGACACTTTTGAACGTACTTTA
AAGTTTCAATCGTTGCTCAGGACCTTTGACGAATGTGCCTTTGGAAAGCT
GAATAGATACACTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031813XLOC_031813Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050212-proteinTCONS_00050212-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050212-exon-scaffold_168-1491911889:85487..85565TCONS_00050212-exon-scaffold_168-1491911889:85487..85565Clytia hemisphaericaexon
TCONS_00050212-exon-scaffold_168-1510915933:85487..85565TCONS_00050212-exon-scaffold_168-1510915933:85487..85565Clytia hemisphaericaexon
TCONS_00050212-exon-scaffold_168-1575043694:85487..85565TCONS_00050212-exon-scaffold_168-1575043694:85487..85565Clytia hemisphaericaexon
TCONS_00050212-exon-scaffold_168-1491911889:86314..87469TCONS_00050212-exon-scaffold_168-1491911889:86314..87469Clytia hemisphaericaexon
TCONS_00050212-exon-scaffold_168-1510915933:86314..87469TCONS_00050212-exon-scaffold_168-1510915933:86314..87469Clytia hemisphaericaexon
TCONS_00050212-exon-scaffold_168-1575043694:86314..87469TCONS_00050212-exon-scaffold_168-1575043694:86314..87469Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_168supercontigscaffold_168:85487..87469 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.103736	0.269757	0.274062	0.306431	1.35231	0.884368	0.889127	1.37344	1.80661	3.42885	1.19112	3.155	3.40359	6.99767	2.61145	1.81213	1.16811	1.43674	5.62396	3.11563	1.8388	1.1252	1.70483	2.27084	1.4479	1.52415	4.74143	4.30115	0.115139	0.351925
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050212 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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