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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050222 ID=TCONS_00050222|Name=TCONS_00050222|organism=Clytia hemisphaerica|type=transcript|length=1377bpRun BLAST on NCBI protein sequence of TCONS_00050222-protein >TCONS_00050222-protein ID=TCONS_00050222-protein|Name=TCONS_00050222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp LARKVNKKKKKMTQAVKDVETLYKLMISQLRYDGLELVATSLAKCCNLDERun BLAST on NCBI transcript from alignment at scaffold_168:133665..144072+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050222 ID=TCONS_00050222|Name=TCONS_00050222|organism=Clytia hemisphaerica|type=transcript|length=10408bp|location=Sequence derived from alignment at scaffold_168:133665..144072+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_168:133665..144072+ >TCONS_00050222 ID=TCONS_00050222|Name=TCONS_00050222|organism=Clytia hemisphaerica|type=CDS|length=20385bp|location=Sequence derived from alignment at scaffold_168:133665..144072+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050222 vs. Swiss-Prot (Human)
Match: CSTF1 (Cleavage stimulation factor subunit 1 OS=Homo sapiens GN=CSTF1 PE=1 SV=1) HSP 1 Score: 415.616 bits (1067), Expect = 3.612e-141 Identity = 211/444 (47.52%), Postives = 282/444 (63.51%), Query Frame = 3
Query: 45 AVKDVETLYKLMISQLRYDGLELVATSLAKCCNLDELP----LAPCNRLLEVVKLGLAEEKSGREPDLMKHPGITPTSQPELQGLETSVKMGLDLEYEKDEFGTSPPVTQYETNYVTAHKGPVTAAAFTKDGRLCATGSVDTSIKILDISRMLAKAAQSKEERQAERDADDGNSMKNHPVIRTMYDHESCVNTLQFHPQSTILVSGGEDRRVNFFDYTKSTVKKAFKCITEVEPIRDISIHPTGEYILVATDHPTIRLYDINTSQCYISPMMDDQHQAPLTSVEYCPAANLYATASLDGSWKLWDGVSNRCVQTYKEAHDTAEVVSVRFTKNSKFVLTSGRDGTAKLWELSTGRVINTYGGAVL--HNSNHCPAVFNFTEDFVLYPDDKNTSIGCWDSRTGEKLQSLTSGHNNSIRHLVHSSCTPAFLSCSEDYRCRFWYCRGS 1358
+KD + LYKL+ISQL YDG +A L ++E+ AP +LL ++KLG+ + + + + + + P + G+DLE++ D SP ++YET YVT+HKGP A +++DG+L ATGS D SIKILD RMLAK+A E E + M+NHPVIRT+YDH V L FHP IL SG D + FDY+K + K+AFK I E E +R IS HP+G++ILV T HPT+RLYDINT QC++S DQH + SV Y +AN+Y T S DG KLWDGVSNRC+ T+++AHD AEV S F+KNSK++L+SG+D AKLWE+STGR + Y GA L + AVFN TED+VL PD++ S+ CWDSRT E+ L+ GHNN +R +VHS P F++CS+D+R RFWY R +
Sbjct: 7 GLKDRQQLYKLIISQLLYDGYISIANGL-----INEIKPQSVCAPSEQLLHLIKLGMENDDTAVQYAIGRSDTVAPGT-------------GIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQN---MENHPVIRTLYDHVDEVTCLAFHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCNPQDQHTDAICSVNYNSSANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKNSKYILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAVFNHTEDYVLLPDERTISLCCWDSRTAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFWYRRST 429 The following BLAST results are available for this feature:
BLAST of TCONS_00050222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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