TCONS_00050245 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050245
Unique NameTCONS_00050245
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050245 ID=TCONS_00050245|Name=TCONS_00050245|organism=Clytia hemisphaerica|type=transcript|length=1396bp
TCGATCATTTGTATCTCGTTTCTGTCGAATCGTGTCCAAGCGACTAATAC
AACGTCCAACGCAACGTCATCTGGAACAGGCCCAGACTTCATTAGCGATT
GCGATACCGAAAAGATGACTATCTATATTCGTAAAGATAAAATTTCAATC
CCTGAAAGTGATCTTTCTCAATACAACATTTCTTGGAATGATCCTAATTG
CGGACCAAGTGAAAGTACCAATGATACACATTTGGTTTTGGTGGCCGGTT
ATTCGTCTTGTGGTACCCAAGCTGTTACCGAGGGTGATCACGTGATATTC
AAGAATAAGGTATCCATTAATTTGAACAAAACAAACTCGTACAAAAACGA
TCTATTGGAGAGGATCGACACGTTCGCCACATATTCCGTTGAATGCAATG
TTCCGCAAGGAGTGAATGTGACACAAGAAAATGGAGTCAATATCACCAAA
GCTGATTTGATTGAAGGAGTATCAAGTTCAACCGATCAATTCACTGTCTC
GATGAATCTCCATAGCGACTCAGAATTCGCCGGAAGTCTCGGTTATCCTG
CAGTTATTGATACATTAGGACGTTTCAATTTGGAACTTGAGATCGACACT
GTTGCAAATTTATACATCATTCCACGAAATTGCTATGGTACTTCAACTTC
GAATCGAGATGATGCCATTCGAGAAGCCTTGGTCACTGACGGATGTCCCA
ATCAAGACCACGTTTTCAAAGTAGAAACCAAAGCTGACGATGGCAAGAAA
TTCCAATTTTCACTCAATGTTTTCCGATTCAAAAACTCAAATGGTATGGT
GTACATTCATTGTTCTGCCCACGTATGTTTGACAGGTAGCAACGACACCA
ACTGTCAATTTGGTTGTCAGGGAAACACCAGACGACGAAGACGTTCAGTG
GAGGATAATGCCTTGACACAACTTGATTTAACCAAAGATTATGACATTCG
AACTGGGTTGATTATTGTCACCGAAAGTTCCAGAAATAACGATTCATCTC
AACAAGACACCAAAGAATCGCAATCCAGCGACAATGATCAATTCTTTCAA
ACCACGACCAATATCATTCTCATTGCACTCATCTCGGTGATGTTTATTTT
CGTTTGTTCTGTCATGGTGATTTTTTGTGTTCGTCGCCATCGAAGTGATT
CAAGAAAGGATGTAACAATGGAAATGCGATGAACCAAAGCGTAAAGAGAT
ACACAAGGTCACTGCTCCATCTAGTTACAAATTTCGAttagttttctttc
aaatttgtttgtattttataaatttcaaaatatcacgaaatgttttaaaa
attgtaaaaaattcaTAATATAAATATAGCAAAAAGATTTTACCAGTAAG
ATTAAAGTCCCTTCGTTGAACTATTTTTTGACACCTGTTAGTGCAG
Run BLAST on NCBI

protein sequence of TCONS_00050245-protein

>TCONS_00050245-protein ID=TCONS_00050245-protein|Name=TCONS_00050245-protein|organism=Clytia hemisphaerica|type=polypeptide|length=393bp
SIICISFLSNRVQATNTTSNATSSGTGPDFISDCDTEKMTIYIRKDKISI
PESDLSQYNISWNDPNCGPSESTNDTHLVLVAGYSSCGTQAVTEGDHVIF
KNKVSINLNKTNSYKNDLLERIDTFATYSVECNVPQGVNVTQENGVNITK
ADLIEGVSSSTDQFTVSMNLHSDSEFAGSLGYPAVIDTLGRFNLELEIDT
VANLYIIPRNCYGTSTSNRDDAIREALVTDGCPNQDHVFKVETKADDGKK
FQFSLNVFRFKNSNGMVYIHCSAHVCLTGSNDTNCQFGCQGNTRRRRRSV
EDNALTQLDLTKDYDIRTGLIIVTESSRNNDSSQQDTKESQSSDNDQFFQ
TTTNIILIALISVMFIFVCSVMVIFCVRRHRSDSRKDVTMEMR
Run BLAST on NCBI

transcript from alignment at scaffold_168:186559..190639-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050245 ID=TCONS_00050245|Name=TCONS_00050245|organism=Clytia hemisphaerica|type=transcript|length=4081bp|location=Sequence derived from alignment at scaffold_168:186559..190639- (Clytia hemisphaerica)
TCGATCATTTGTATCTCGTTTCTGTCGAATCGTGTCCAAGCGACTAATAC
AACGTCCAACGCAACGTCATCTGGAACAGGCCCAGGTATAAATCCAATAA
ATCATCAATTTTCGATTGTTTACCATAGTTAAAAATTTAACGAACTGAAA
ATGACGCGGGAAATAACGAGAGCTCAAGGTAGAAGAGTTTAGGCCTTTCC
GGACGATAGAAATGTAAAAAAAAATCAAATGTTTTGAGTCTTGCGTAAGC
GTCTTAGTGCGCACGGTGCCTTAAATAGACCTACCTTACTCGAAATTTCC
TGATGTTTCCAACGACACCATACTTATAATAATCCAAAAGTTCCCTTAAC
AGTCGAAAAACGCTTCAATTGCAGAGATCCACTTTTTTTGGTGATTTTGG
TTGGTGCTTTTGATGTTTAGGGAACTTCAGGATTGTTATGGGAAAGTGCA
GTAGCTGAAAAAGCTCTTGAGAAGACTTTCGAGATATTCTTGTTTGAAGT
ATGGTCACTAGTATGTCCCACTTCTTGGCACGTGCGCTCGGAAAGAATCA
AGTCAAAAACACATTAGTTTATTGGCAAAAATTTCATTAATTAAGTCAAT
GAATTTTGAGAACTTGATGAAATTATTTAATCATAATTGTGTTTTAACAT
TTTCCCAACAATCGGTAATTTTGTGATTTTAATCCATTCTTTAACTTCAG
ACTTCATTAGCGATTGCGATACCGAAAAGATGACTATCTATATTCGTAAA
GATAAAATTTCAATCCCTGAAAGTGATCTTTCTCAATACAACATTTCTTG
GAATGATCCTAATTGCGGACCAAGTGAAAGTACCAATGATACACATTTGG
TTTTGGTGGCCGGTTATTCGTCTTGTGGTACCCAAGCTGTTACCGAGGGT
GATCACGTGATATTCAAGAATAAGGTAGGGCTGATTTTACAAATAAAGGA
TAGCAACCATTATGTTTTTTGAATGATTGACAGCCGTGAAATCTTTCGAT
AAGCTTCAAAAAATGTGTTGTTTCTTTTCTCATATTCGAATCTAATTCAG
TCTTTCTGGTATTTTGACCAGGGGAAGATTCTAAATATTTCCTAAAGATT
ACTTTCTAAGTGTTTTTTTGTCGATTTGTCACAGCTTGTCTGTTACCAAA
TGAATGCCAAATGAACGTCAAGTGAATCTCAACTTCAAAATGTTTTTATA
TTCCCCAGGTATCCATTAATTTGAACAAAACAAACTCGTACAAAAACGAT
CTATTGGAGAGGATCGACACGTTCGCCACATATTCCGTTGAATGCAATGT
TCCGCAAGGAGTGAATGTGACACAAGAAAATGGAGTCAATATCACCAAAG
CTGATTTGATTGAAGGAGTATCAAGTATGTATAGCGTCAATATCGCAGCT
CTGGAAACTTTCCTCGCAGGCAGCGGGGATGAAAATTCTTAATGAAATCC
CAATGGGGATAAAAATTCTATTTCCAAGCTTGAAATATGCAATGAGGATG
GTTTTGGAATAAAATTTTTAAACATTTAATTTCGAATGGGGACGAAATCA
AAGCCAATTTCTGAGTGGGGTTGAACTTTGTATGGTATTCTCCCACCGAA
GACGAAATTTTGGCCTAATTTTCCAGTGGGGCTAAGGTCCCAACGTGTCT
GTGACAAAGTAGAGTGTTTATGTATAGGAAACCAGCCGATCAATGGAATA
CTTGGATTAACATAGTATTGGATTGACAGAGACGCGCAGCGTTGACCCTT
TTTTAACAGCCCTTTTGTAGCCTGGGAGCACGTTCTAGCAAGAATGTCTC
GTTGTAAAATCTAACGTTTTCGATATTTAGCTTTTATGAGGTCCGTAATG
AAAATTTAAATTAAAGCAAGATTTTTTATTAGCCTCATATTTGAACCCTT
ATAGGTTCAACCGATCAATTCACTGTCTCGATGAATCTCCATAGCGACTC
AGAATTCGCCGGAAGTCTCGGTTATCCTGCAGTTATTGATACATTAGGAC
GTTTCAATTTGGAACTTGAGATCGACACTGTTGCAAATTTATACATCATT
CCACGAAATTGCTATGGTACTTCAACTTCGAATCGAGATGATGCCATTCG
AGAAGCCTTGGTCACTGACGGGTAATGCAACGGCTTTGTTCTTTTCTAGA
ATTGGTGATTGTTATGACTTTGTATTCCTAGATGGTCGTATATTCACTGT
ACTGTATTTTCGTTTATTTTCGTTACCCTGTCCACGATAGATATCCTGGG
AAATTAACTTCAAAGTTTGTTTTATTGAATTTAGCGTATTTTAAATTTGT
CACTACTGTTACAAAACCGGGGTGTTTCCGTACAAAAACATTTCATGTAT
GTTATGAACCATTGAGCTGATGAAGTGATTGGGTTGCTTCGGGGTTGCTT
TTAATTCCCGAATGAAAATTCATTTATGTCTGATAATACCCCTTGACTGA
ACAGTTGGATATCGCCGTTGCTAAAGGTGCTAGGGTCTTCATTCGCTTTA
TTTAATTTTTCCTTACTATTTAAATTGCTTTTCAGATGTCCCAATCAAGA
CCACGTTTTCAAAGTAGAAACCAAAGCTGACGATGGCAAGAAATTCCAAT
TTTCACTCAATGTTTTCCGATTCAAAAACTCAAATGGTATGGTGTACATT
CATTGTTCTGCCCACGTATGTTTGACAGGTAGCAACGACACCAACTGTCA
ATTTGGTTGTCAGGGAAACACCAGACGACGAAGACGTTCAGTGGAGGATA
ATGCCTTGACACAACTTGATTTAACCAAAGATTATGACATTCGAACTGGG
TTGATTATTGTCACCGAAAGTTCCAGAAGTAAGTTGGAATATTGAAAGTG
CTGGATACTGTAAAACCAAATTAACCAAATTATATAAGTGCAATTAACAC
CTCGCTAAGAAACCTTTGAATTCTCCTTAAATCAATTAAATTCAATCAAA
GTTTGGGTTCAAGTCACCTGCTTAATAGTAGGGGGCCAAGCCTTGGGTCC
CGTGACATCTTTTCTAAGACCGAACCATTTTTAGTCTATTCCAAAGAACA
GTATATTACAAGATATTTTTGAGAGGGAGGACGTGGATTAGGCCCGGGAA
AACTTTTTATGACCAAAATAGTGACGCCATAGGCAAAACTGCAAGGGAAA
ATCGGGGTAGAGAAATAGCTGATTTTCAAAAGTCAAAATAAACGAAAATG
ATTTGTACCATCTGATAAAGCATGAACTCTCTGACTAAAACACACAAAGG
AATACAGCCGCTATAAGACCAACTAACTGTCAGCTCTACTGTGATTTGAC
GTCAAATCTCGTCTTGATCGTATACTGACGAAAGTATGTTTTTTAACTTT
AAATGGCTGTATTTCTTTGTGTGTTTTAGTCAGAGTCTTCTGGTCTTATT
TCTGGGCAAAAAGTGAAGTATTGTTCTTGTAAAGAATATTTCATGAATGG
TGGGTTGCTAACTTGCTAAAAGGAGATATTCGTATCTTATAGTAAGCCTT
GGATCCCGTGACATCTTTTCTGGGGAAAAAGCCAAGCCTCGTAAAAAATT
ATTCTGTTTCTTGTAAACAAAGTCTTATAAGTAAAACTCTGAATTTTCAT
TCTTTTGGTAAGTGAATCATTAATCATGAAAGTGTTCCAAATTTTTTGAA
ATCTGATTTTCATCTTCTAGATAACGATTCATCTCAACAAGACACCAAAG
AATCGCAATCCAGCGACAATGATCAATTCTTTCAAACCACGACCAATATC
ATTCTCATTGCACTCATCTCGGTGATGTTTATTTTCGTTTGTTCTGTCAT
GGTGATTTTTTGTGTTCGTCGCCATCGAAGTGATTCAAGAAAGGATGTAA
CAATGGAAATGCGATGAACCAAAGCGTAAAGAGATACACAAGGTCACTGC
TCCATCTAGTTACAAATTTCGATTAGTTTTCTTTCAAATTTGTTTGTATT
TTATAAATTTCAAAATATCACGAAATGTTTTAAAAATTGTAAAAAATTCA
TAATATAAATATAGCAAAAAGATTTTACCAGTAAGATTAAAGTCCCTTCG
TTGAACTATTTTTTGACACCTGTTAGTGCAG

Coding sequence (CDS) from alignment at scaffold_168:186559..190639-

>TCONS_00050245 ID=TCONS_00050245|Name=TCONS_00050245|organism=Clytia hemisphaerica|type=CDS|length=7092bp|location=Sequence derived from alignment at scaffold_168:186559..190639- (Clytia hemisphaerica)
ATAACGATTCATCTCAACAAGACACCAAAGAATCGCAATCCAGCGACAAT
GATCAATTCTTTCAAACCACGACCAATATCATTCTCATTGCACTCATCTC
GGTGATGTTTATTTTCGTTTGTTCTGTCATGGTGATTTTTTGTGTTCGTC
GCCATCGAAGTGATTCAAGAAAGGATGTAACAATGGAAATGCGATGAATG
TCCCAATCAAGACCACGTTTTCAAAGTAGAAACCAAAGCTGACGATGGCA
AGAAATTCCAATTTTCACTCAATGTTTTCCGATTCAAAAACTCAAATGGT
ATGGTGTACATTCATTGTTCTGCCCACGTATGTTTGACAGGTAGCAACGA
CACCAACTGTCAATTTGGTTGTCAGGGAAACACCAGACGACGAAGACGTT
CAGTGGAGGATAATGCCTTGACACAACTTGATTTAACCAAAGATTATGAC
ATTCGAACTGGGTTGATTATTGTCACCGAAAGTTCCAGAAGTTCAACCGA
TCAATTCACTGTCTCGATGAATCTCCATAGCGACTCAGAATTCGCCGGAA
GTCTCGGTTATCCTGCAGTTATTGATACATTAGGACGTTTCAATTTGGAA
CTTGAGATCGACACTGTTGCAAATTTATACATCATTCCACGAAATTGCTA
TGGTACTTCAACTTCGAATCGAGATGATGCCATTCGAGAAGCCTTGGTCA
CTGACGGGTATCCATTAATTTGAACAAAACAAACTCGTACAAAAACGATC
TATTGGAGAGGATCGACACGTTCGCCACATATTCCGTTGAATGCAATGTT
CCGCAAGGAGTGAATGTGACACAAGAAAATGGAGTCAATATCACCAAAGC
TGATTTGATTGAAGGAGTATCAAACTTCATTAGCGATTGCGATACCGAAA
AGATGACTATCTATATTCGTAAAGATAAAATTTCAATCCCTGAAAGTGAT
CTTTCTCAATACAACATTTCTTGGAATGATCCTAATTGCGGACCAAGTGA
AAGTACCAATGATACACATTTGGTTTTGGTGGCCGGTTATTCGTCTTGTG
GTACCCAAGCTGTTACCGAGGGTGATCACGTGATATTCAAGAATAAGTCG
ATCATTTGTATCTCGTTTCTGTCGAATCGTGTCCAAGCGACTAATACAAC
GTCCAACGCAACGTCATCTGGAACAGGCCCAGATAACGATTCATCTCAAC
AAGACACCAAAGAATCGCAATCCAGCGACAATGATCAATTCTTTCAAACC
ACGACCAATATCATTCTCATTGCACTCATCTCGGTGATGTTTATTTTCGT
TTGTTCTGTCATGGTGATTTTTTGTGTTCGTCGCCATCGAAGTGATTCAA
GAAAGGATGTAACAATGGAAATGCGATGAATGTCCCAATCAAGACCACGT
TTTCAAAGTAGAAACCAAAGCTGACGATGGCAAGAAATTCCAATTTTCAC
TCAATGTTTTCCGATTCAAAAACTCAAATGGTATGGTGTACATTCATTGT
TCTGCCCACGTATGTTTGACAGGTAGCAACGACACCAACTGTCAATTTGG
TTGTCAGGGAAACACCAGACGACGAAGACGTTCAGTGGAGGATAATGCCT
TGACACAACTTGATTTAACCAAAGATTATGACATTCGAACTGGGTTGATT
ATTGTCACCGAAAGTTCCAGAAGTTCAACCGATCAATTCACTGTCTCGAT
GAATCTCCATAGCGACTCAGAATTCGCCGGAAGTCTCGGTTATCCTGCAG
TTATTGATACATTAGGACGTTTCAATTTGGAACTTGAGATCGACACTGTT
GCAAATTTATACATCATTCCACGAAATTGCTATGGTACTTCAACTTCGAA
TCGAGATGATGCCATTCGAGAAGCCTTGGTCACTGACGGGTATCCATTAA
TTTGAACAAAACAAACTCGTACAAAAACGATCTATTGGAGAGGATCGACA
CGTTCGCCACATATTCCGTTGAATGCAATGTTCCGCAAGGAGTGAATGTG
ACACAAGAAAATGGAGTCAATATCACCAAAGCTGATTTGATTGAAGGAGT
ATCAAACTTCATTAGCGATTGCGATACCGAAAAGATGACTATCTATATTC
GTAAAGATAAAATTTCAATCCCTGAAAGTGATCTTTCTCAATACAACATT
TCTTGGAATGATCCTAATTGCGGACCAAGTGAAAGTACCAATGATACACA
TTTGGTTTTGGTGGCCGGTTATTCGTCTTGTGGTACCCAAGCTGTTACCG
AGGGTGATCACGTGATATTCAAGAATAAGTCGATCATTTGTATCTCGTTT
CTGTCGAATCGTGTCCAAGCGACTAATACAACGTCCAACGCAACGTCATC
TGGAACAGGCCCAGATAACGATTCATCTCAACAAGACACCAAAGAATCGC
AATCCAGCGACAATGATCAATTCTTTCAAACCACGACCAATATCATTCTC
ATTGCACTCATCTCGGTGATGTTTATTTTCGTTTGTTCTGTCATGGTGAT
TTTTTGTGTTCGTCGCCATCGAAGTGATTCAAGAAAGGATGTAACAATGG
AAATGCGATGAATGTCCCAATCAAGACCACGTTTTCAAAGTAGAAACCAA
AGCTGACGATGGCAAGAAATTCCAATTTTCACTCAATGTTTTCCGATTCA
AAAACTCAAATGGTATGGTGTACATTCATTGTTCTGCCCACGTATGTTTG
ACAGGTAGCAACGACACCAACTGTCAATTTGGTTGTCAGGGAAACACCAG
ACGACGAAGACGTTCAGTGGAGGATAATGCCTTGACACAACTTGATTTAA
CCAAAGATTATGACATTCGAACTGGGTTGATTATTGTCACCGAAAGTTCC
AGAAGTTCAACCGATCAATTCACTGTCTCGATGAATCTCCATAGCGACTC
AGAATTCGCCGGAAGTCTCGGTTATCCTGCAGTTATTGATACATTAGGAC
GTTTCAATTTGGAACTTGAGATCGACACTGTTGCAAATTTATACATCATT
CCACGAAATTGCTATGGTACTTCAACTTCGAATCGAGATGATGCCATTCG
AGAAGCCTTGGTCACTGACGGGTATCCATTAATTTGAACAAAACAAACTC
GTACAAAAACGATCTATTGGAGAGGATCGACACGTTCGCCACATATTCCG
TTGAATGCAATGTTCCGCAAGGAGTGAATGTGACACAAGAAAATGGAGTC
AATATCACCAAAGCTGATTTGATTGAAGGAGTATCAAACTTCATTAGCGA
TTGCGATACCGAAAAGATGACTATCTATATTCGTAAAGATAAAATTTCAA
TCCCTGAAAGTGATCTTTCTCAATACAACATTTCTTGGAATGATCCTAAT
TGCGGACCAAGTGAAAGTACCAATGATACACATTTGGTTTTGGTGGCCGG
TTATTCGTCTTGTGGTACCCAAGCTGTTACCGAGGGTGATCACGTGATAT
TCAAGAATAAGTCGATCATTTGTATCTCGTTTCTGTCGAATCGTGTCCAA
GCGACTAATACAACGTCCAACGCAACGTCATCTGGAACAGGCCCAGATAA
CGATTCATCTCAACAAGACACCAAAGAATCGCAATCCAGCGACAATGATC
AATTCTTTCAAACCACGACCAATATCATTCTCATTGCACTCATCTCGGTG
ATGTTTATTTTCGTTTGTTCTGTCATGGTGATTTTTTGTGTTCGTCGCCA
TCGAAGTGATTCAAGAAAGGATGTAACAATGGAAATGCGATGAATGTCCC
AATCAAGACCACGTTTTCAAAGTAGAAACCAAAGCTGACGATGGCAAGAA
ATTCCAATTTTCACTCAATGTTTTCCGATTCAAAAACTCAAATGGTATGG
TGTACATTCATTGTTCTGCCCACGTATGTTTGACAGGTAGCAACGACACC
AACTGTCAATTTGGTTGTCAGGGAAACACCAGACGACGAAGACGTTCAGT
GGAGGATAATGCCTTGACACAACTTGATTTAACCAAAGATTATGACATTC
GAACTGGGTTGATTATTGTCACCGAAAGTTCCAGAAGTTCAACCGATCAA
TTCACTGTCTCGATGAATCTCCATAGCGACTCAGAATTCGCCGGAAGTCT
CGGTTATCCTGCAGTTATTGATACATTAGGACGTTTCAATTTGGAACTTG
AGATCGACACTGTTGCAAATTTATACATCATTCCACGAAATTGCTATGGT
ACTTCAACTTCGAATCGAGATGATGCCATTCGAGAAGCCTTGGTCACTGA
CGGGTATCCATTAATTTGAACAAAACAAACTCGTACAAAAACGATCTATT
GGAGAGGATCGACACGTTCGCCACATATTCCGTTGAATGCAATGTTCCGC
AAGGAGTGAATGTGACACAAGAAAATGGAGTCAATATCACCAAAGCTGAT
TTGATTGAAGGAGTATCAAACTTCATTAGCGATTGCGATACCGAAAAGAT
GACTATCTATATTCGTAAAGATAAAATTTCAATCCCTGAAAGTGATCTTT
CTCAATACAACATTTCTTGGAATGATCCTAATTGCGGACCAAGTGAAAGT
ACCAATGATACACATTTGGTTTTGGTGGCCGGTTATTCGTCTTGTGGTAC
CCAAGCTGTTACCGAGGGTGATCACGTGATATTCAAGAATAAGTCGATCA
TTTGTATCTCGTTTCTGTCGAATCGTGTCCAAGCGACTAATACAACGTCC
AACGCAACGTCATCTGGAACAGGCCCAGATAACGATTCATCTCAACAAGA
CACCAAAGAATCGCAATCCAGCGACAATGATCAATTCTTTCAAACCACGA
CCAATATCATTCTCATTGCACTCATCTCGGTGATGTTTATTTTCGTTTGT
TCTGTCATGGTGATTTTTTGTGTTCGTCGCCATCGAAGTGATTCAAGAAA
GGATGTAACAATGGAAATGCGATGAATGTCCCAATCAAGACCACGTTTTC
AAAGTAGAAACCAAAGCTGACGATGGCAAGAAATTCCAATTTTCACTCAA
TGTTTTCCGATTCAAAAACTCAAATGGTATGGTGTACATTCATTGTTCTG
CCCACGTATGTTTGACAGGTAGCAACGACACCAACTGTCAATTTGGTTGT
CAGGGAAACACCAGACGACGAAGACGTTCAGTGGAGGATAATGCCTTGAC
ACAACTTGATTTAACCAAAGATTATGACATTCGAACTGGGTTGATTATTG
TCACCGAAAGTTCCAGAAGTTCAACCGATCAATTCACTGTCTCGATGAAT
CTCCATAGCGACTCAGAATTCGCCGGAAGTCTCGGTTATCCTGCAGTTAT
TGATACATTAGGACGTTTCAATTTGGAACTTGAGATCGACACTGTTGCAA
ATTTATACATCATTCCACGAAATTGCTATGGTACTTCAACTTCGAATCGA
GATGATGCCATTCGAGAAGCCTTGGTCACTGACGGGTATCCATTAATTTG
AACAAAACAAACTCGTACAAAAACGATCTATTGGAGAGGATCGACACGTT
CGCCACATATTCCGTTGAATGCAATGTTCCGCAAGGAGTGAATGTGACAC
AAGAAAATGGAGTCAATATCACCAAAGCTGATTTGATTGAAGGAGTATCA
AACTTCATTAGCGATTGCGATACCGAAAAGATGACTATCTATATTCGTAA
AGATAAAATTTCAATCCCTGAAAGTGATCTTTCTCAATACAACATTTCTT
GGAATGATCCTAATTGCGGACCAAGTGAAAGTACCAATGATACACATTTG
GTTTTGGTGGCCGGTTATTCGTCTTGTGGTACCCAAGCTGTTACCGAGGG
TGATCACGTGATATTCAAGAATAAGTCGATCATTTGTATCTCGTTTCTGT
CGAATCGTGTCCAAGCGACTAATACAACGTCCAACGCAACGTCATCTGGA
ACAGGCCCAGATAACGATTCATCTCAACAAGACACCAAAGAATCGCAATC
CAGCGACAATGATCAATTCTTTCAAACCACGACCAATATCATTCTCATTG
CACTCATCTCGGTGATGTTTATTTTCGTTTGTTCTGTCATGGTGATTTTT
TGTGTTCGTCGCCATCGAAGTGATTCAAGAAAGGATGTAACAATGGAAAT
GCGATGAATGTCCCAATCAAGACCACGTTTTCAAAGTAGAAACCAAAGCT
GACGATGGCAAGAAATTCCAATTTTCACTCAATGTTTTCCGATTCAAAAA
CTCAAATGGTATGGTGTACATTCATTGTTCTGCCCACGTATGTTTGACAG
GTAGCAACGACACCAACTGTCAATTTGGTTGTCAGGGAAACACCAGACGA
CGAAGACGTTCAGTGGAGGATAATGCCTTGACACAACTTGATTTAACCAA
AGATTATGACATTCGAACTGGGTTGATTATTGTCACCGAAAGTTCCAGAA
GTTCAACCGATCAATTCACTGTCTCGATGAATCTCCATAGCGACTCAGAA
TTCGCCGGAAGTCTCGGTTATCCTGCAGTTATTGATACATTAGGACGTTT
CAATTTGGAACTTGAGATCGACACTGTTGCAAATTTATACATCATTCCAC
GAAATTGCTATGGTACTTCAACTTCGAATCGAGATGATGCCATTCGAGAA
GCCTTGGTCACTGACGGGTATCCATTAATTTGAACAAAACAAACTCGTAC
AAAAACGATCTATTGGAGAGGATCGACACGTTCGCCACATATTCCGTTGA
ATGCAATGTTCCGCAAGGAGTGAATGTGACACAAGAAAATGGAGTCAATA
TCACCAAAGCTGATTTGATTGAAGGAGTATCAAACTTCATTAGCGATTGC
GATACCGAAAAGATGACTATCTATATTCGTAAAGATAAAATTTCAATCCC
TGAAAGTGATCTTTCTCAATACAACATTTCTTGGAATGATCCTAATTGCG
GACCAAGTGAAAGTACCAATGATACACATTTGGTTTTGGTGGCCGGTTAT
TCGTCTTGTGGTACCCAAGCTGTTACCGAGGGTGATCACGTGATATTCAA
GAATAAGTCGATCATTTGTATCTCGTTTCTGTCGAATCGTGTCCAAGCGA
CTAATACAACGTCCAACGCAACGTCATCTGGAACAGGCCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031828XLOC_031828Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050245-proteinTCONS_00050245-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050245-exon-scaffold_168-1575043694:190555..190639TCONS_00050245-exon-scaffold_168-1575043694:190555..190639Clytia hemisphaericaexon
TCONS_00050245-exon-scaffold_168-1575043694:189716..189939TCONS_00050245-exon-scaffold_168-1575043694:189716..189939Clytia hemisphaericaexon
TCONS_00050245-exon-scaffold_168-1575043694:189266..189431TCONS_00050245-exon-scaffold_168-1575043694:189266..189431Clytia hemisphaericaexon
TCONS_00050245-exon-scaffold_168-1575043694:188519..188735TCONS_00050245-exon-scaffold_168-1575043694:188519..188735Clytia hemisphaericaexon
TCONS_00050245-exon-scaffold_168-1575043694:187812..188104TCONS_00050245-exon-scaffold_168-1575043694:187812..188104Clytia hemisphaericaexon
TCONS_00050245-exon-scaffold_168-1575043694:186559..186969TCONS_00050245-exon-scaffold_168-1575043694:186559..186969Clytia hemisphaericaexon
TCONS_00050245-exon-scaffold_168-1510915933:190555..190639TCONS_00050245-exon-scaffold_168-1510915933:190555..190639Clytia hemisphaericaexon
TCONS_00050245-exon-scaffold_168-1510915933:189716..189939TCONS_00050245-exon-scaffold_168-1510915933:189716..189939Clytia hemisphaericaexon
TCONS_00050245-exon-scaffold_168-1510915933:189266..189431TCONS_00050245-exon-scaffold_168-1510915933:189266..189431Clytia hemisphaericaexon
TCONS_00050245-exon-scaffold_168-1510915933:188519..188735TCONS_00050245-exon-scaffold_168-1510915933:188519..188735Clytia hemisphaericaexon
TCONS_00050245-exon-scaffold_168-1510915933:187812..188104TCONS_00050245-exon-scaffold_168-1510915933:187812..188104Clytia hemisphaericaexon
TCONS_00050245-exon-scaffold_168-1510915933:186559..186969TCONS_00050245-exon-scaffold_168-1510915933:186559..186969Clytia hemisphaericaexon
TCONS_00050245-exon-scaffold_168-1491911889:190555..190639TCONS_00050245-exon-scaffold_168-1491911889:190555..190639Clytia hemisphaericaexon
TCONS_00050245-exon-scaffold_168-1491911889:189716..189939TCONS_00050245-exon-scaffold_168-1491911889:189716..189939Clytia hemisphaericaexon
TCONS_00050245-exon-scaffold_168-1491911889:189266..189431TCONS_00050245-exon-scaffold_168-1491911889:189266..189431Clytia hemisphaericaexon
TCONS_00050245-exon-scaffold_168-1491911889:188519..188735TCONS_00050245-exon-scaffold_168-1491911889:188519..188735Clytia hemisphaericaexon
TCONS_00050245-exon-scaffold_168-1491911889:187812..188104TCONS_00050245-exon-scaffold_168-1491911889:187812..188104Clytia hemisphaericaexon
TCONS_00050245-exon-scaffold_168-1491911889:186559..186969TCONS_00050245-exon-scaffold_168-1491911889:186559..186969Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_168supercontigscaffold_168:186559..190639 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1493.5	1508.34	1600.03	1457.38	5.76382	5.12796	1.38335	2.23041	1.24334	4.71084	0.363374	0.676791	0.159024	0.103217	0	0.0182133	0.24681	0.298967	0.413039	0.265979	1.04033	0.426898	333.689	273.749	0.22463	0.257756	13.3449	15.7552	137.208	158.954
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001507ZP_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050245 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top