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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050287 ID=TCONS_00050287|Name=TCONS_00050287|organism=Clytia hemisphaerica|type=transcript|length=1172bp
GTTGCTGTTTTGAGTAGAAAACTATATTGTGTGTATTGGAGAGAGAATCG
ATTGCATTTCTAACATATTCAAACAGATGGGTCGTAGTGATTGGTCTTGG
CTGGTCTTTGGTTGACATGTGGATTGAGAACACTATCAGTTGGAGGACCT
TCTTGAGTTGTTCCAGAGGATGTAGATGAGGAAGCTGGTACAGACACGCC
GAACGGTTGTTTAAAACGTTTGATAGCCATGTCCTTAAATCAGTACTCAG
GTCGATGAAATGGTGATTTGAAAAGTTGATGGTGTTTTTTTCTACGCATA
TCACAGGATGGAAGGACCACCCTGGTCCAAGTTGATCACCGAGTTGCTTC
TCCAGCGCTGAATGATACTTGTTAAGCTGTTTGAATGCTGTTGTCTTACT
CGTCAGTGTTCTTTTCACTTCCACACCAATGATGAGCTTGCGTGACCAAG
AGAAGATGAGCATATCAAATTCTTGGTGCATCTGACTAGTGACATCTGTC
ATGAAATTGACTGATGATAAAACTACAATGTCCTGCAGTATTTCATCATT
CTTTAGTGAAAACAATTTCTCGAAGAAGGAACGTTCGTTTTTCTCTCCAC
GACTAGCCAACTTCAAATTGATAAACCAGCTGAGTATCGGATCCTGTGGC
GGTAGTTTGGCTATTTGTTTttccactttcactttcattttgttCGCAGT
CAAGATGTTCAAAATGGAAGAGCTCGGTGCGATACTGTTCAGCTCTTTAG
TACACTCCTGAGTGAATGTAGGTGATGTTGTCATTGGCAAATTCAGCTTA
CTAACGTCCAGTTCCTGAGTTAACAGGTAcatcactttcacttttagaAT
CCACTTTTCGTATTCTGTTTGATCGATTTCACTACCTTGTTTTTGGGTTT
GAAGAAAGACGTCTAAGTCCTTGGTAAGCCAAAATTTTGGAGCTTGTTTC
TTAAGATTCTCAAGAGTTTGTCTCATTTGATTTTCAATGTCCGGTTCAAG
GTCTGCAGTTGACGATTCTTTAAAATACTGACTGCATACAAATTCTGATG
ATATAAAGATTGGTTCATGGTGATTTgagtcgaaaacgaaagattccCCG
TACTCTCTCTCTAAAAGATATTCAGCAGCTAGGATCGGATCTTGAAACGT
TTGTCCGTTGCCAACATTAAAT Run BLAST on NCBI protein sequence of TCONS_00050287-protein >TCONS_00050287-protein ID=TCONS_00050287-protein|Name=TCONS_00050287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
FNVGNGQTFQDPILAAEYLLEREYGESFVFDSNHHEPIFISSEFVCSQYF
KESSTADLEPDIENQMRQTLENLKKQAPKFWLTKDLDVFLQTQKQGSEID
QTEYEKWILKVKVMYLLTQELDVSKLNLPMTTSPTFTQECTKELNSIAPS
SSILNILTANKMKVKVEKQIAKLPPQDPILSWFINLKLASRGEKNERSFF
EKLFSLKNDEILQDIVVLSSVNFMTDVTSQMHQEFDMLIFSWSRKLIIGV
EVKRTLTSKTTAFKQLNKYHSALEKQLGDQLGPGWSFHPVICVEKNTINF
SNHHFIDLSTDLRTWLSNVLNNRSACLYQLPHLHPLEQLKKVLQLIVFSI
HMSTKDQPRPITTTHLFEYVRNAIDSLSNTHNIVFYSKQQ Run BLAST on NCBI transcript from alignment at scaffold_168:84161..85332 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050287 ID=TCONS_00050287|Name=TCONS_00050287|organism=Clytia hemisphaerica|type=transcript|length=1172bp|location=Sequence derived from alignment at scaffold_168:84161..85332 (Clytia hemisphaerica)
ATTTAATGTTGGCAACGGACAAACGTTTCAAGATCCGATCCTAGCTGCTG
AATATCTTTTAGAGAGAGAGTACGGggaatctttcgttttcgactcAAAT
CACCATGAACCAATCTTTATATCATCAGAATTTGTATGCAGTCAGTATTT
TAAAGAATCGTCAACTGCAGACCTTGAACCGGACATTGAAAATCAAATGA
GACAAACTCTTGAGAATCTTAAGAAACAAGCTCCAAAATTTTGGCTTACC
AAGGACTTAGACGTCTTTCTTCAAACCCAAAAACAAGGTAGTGAAATCGA
TCAAACAGAATACGAAAAGTGGATtctaaaagtgaaagtgatgTACCTGT
TAACTCAGGAACTGGACGTTAGTAAGCTGAATTTGCCAATGACAACATCA
CCTACATTCACTCAGGAGTGTACTAAAGAGCTGAACAGTATCGCACCGAG
CTCTTCCATTTTGAACATCTTGACTGCGaacaaaatgaaagtgaaagtgg
aaAAACAAATAGCCAAACTACCGCCACAGGATCCGATACTCAGCTGGTTT
ATCAATTTGAAGTTGGCTAGTCGTGGAGAGAAAAACGAACGTTCCTTCTT
CGAGAAATTGTTTTCACTAAAGAATGATGAAATACTGCAGGACATTGTAG
TTTTATCATCAGTCAATTTCATGACAGATGTCACTAGTCAGATGCACCAA
GAATTTGATATGCTCATCTTCTCTTGGTCACGCAAGCTCATCATTGGTGT
GGAAGTGAAAAGAACACTGACGAGTAAGACAACAGCATTCAAACAGCTTA
ACAAGTATCATTCAGCGCTGGAGAAGCAACTCGGTGATCAACTTGGACCA
GGGTGGTCCTTCCATCCTGTGATATGCGTAGAAAAAAACACCATCAACTT
TTCAAATCACCATTTCATCGACCTGAGTACTGATTTAAGGACATGGCTAT
CAAACGTTTTAAACAACCGTTCGGCGTGTCTGTACCAGCTTCCTCATCTA
CATCCTCTGGAACAACTCAAGAAGGTCCTCCAACTGATAGTGTTCTCAAT
CCACATGTCAACCAAAGACCAGCCAAGACCAATCACTACGACCCATCTGT
TTGAATATGTTAGAAATGCAATCGATTCTCTCTCCAATACACACAATATA
GTTTTCTACTCAAAACAGCAAC Coding sequence (CDS) from alignment at scaffold_168:84161..85332 >TCONS_00050287 ID=TCONS_00050287|Name=TCONS_00050287|organism=Clytia hemisphaerica|type=CDS|length=1170bp|location=Sequence derived from alignment at scaffold_168:84161..85332 (Clytia hemisphaerica)
TTTAATGTTGGCAACGGACAAACGTTTCAAGATCCGATCCTAGCTGCTGA
ATATCTTTTAGAGAGAGAGTACGGggaatctttcgttttcgactcAAATC
ACCATGAACCAATCTTTATATCATCAGAATTTGTATGCAGTCAGTATTTT
AAAGAATCGTCAACTGCAGACCTTGAACCGGACATTGAAAATCAAATGAG
ACAAACTCTTGAGAATCTTAAGAAACAAGCTCCAAAATTTTGGCTTACCA
AGGACTTAGACGTCTTTCTTCAAACCCAAAAACAAGGTAGTGAAATCGAT
CAAACAGAATACGAAAAGTGGATtctaaaagtgaaagtgatgTACCTGTT
AACTCAGGAACTGGACGTTAGTAAGCTGAATTTGCCAATGACAACATCAC
CTACATTCACTCAGGAGTGTACTAAAGAGCTGAACAGTATCGCACCGAGC
TCTTCCATTTTGAACATCTTGACTGCGaacaaaatgaaagtgaaagtgga
aAAACAAATAGCCAAACTACCGCCACAGGATCCGATACTCAGCTGGTTTA
TCAATTTGAAGTTGGCTAGTCGTGGAGAGAAAAACGAACGTTCCTTCTTC
GAGAAATTGTTTTCACTAAAGAATGATGAAATACTGCAGGACATTGTAGT
TTTATCATCAGTCAATTTCATGACAGATGTCACTAGTCAGATGCACCAAG
AATTTGATATGCTCATCTTCTCTTGGTCACGCAAGCTCATCATTGGTGTG
GAAGTGAAAAGAACACTGACGAGTAAGACAACAGCATTCAAACAGCTTAA
CAAGTATCATTCAGCGCTGGAGAAGCAACTCGGTGATCAACTTGGACCAG
GGTGGTCCTTCCATCCTGTGATATGCGTAGAAAAAAACACCATCAACTTT
TCAAATCACCATTTCATCGACCTGAGTACTGATTTAAGGACATGGCTATC
AAACGTTTTAAACAACCGTTCGGCGTGTCTGTACCAGCTTCCTCATCTAC
ATCCTCTGGAACAACTCAAGAAGGTCCTCCAACTGATAGTGTTCTCAATC
CACATGTCAACCAAAGACCAGCCAAGACCAATCACTACGACCCATCTGTT
TGAATATGTTAGAAATGCAATCGATTCTCTCTCCAATACACACAATATAG
TTTTCTACTCAAAACAGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050287-exon-scaffold_168-1491911889:84161..85332 | TCONS_00050287-exon-scaffold_168-1491911889:84161..85332 | Clytia hemisphaerica | exon |
| TCONS_00050287-exon-scaffold_168-1510915933:84161..85332 | TCONS_00050287-exon-scaffold_168-1510915933:84161..85332 | Clytia hemisphaerica | exon |
| TCONS_00050287-exon-scaffold_168-1575043694:84161..85332 | TCONS_00050287-exon-scaffold_168-1575043694:84161..85332 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_168 | supercontig | scaffold_168:84161..85332 . |
Blast
The following BLAST results are available for this feature:
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