TCONS_00050288 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050288
Unique NameTCONS_00050288
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length706

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050288 ID=TCONS_00050288|Name=TCONS_00050288|organism=Clytia hemisphaerica|type=transcript|length=706bp
attgaacgcaattgaacacaatcgactAATTGTAATTCGATTGTTCAATG
CAGTTGAAttgcaattgaatattacccagaatttgcAATTCGATTGCCTT
AATTACGTTTCATTGTATTTGATTATGTTTGATTGCCTTTGATTAtgttt
gattgcgttcaattgattcaattGCATTAGATTTTTTCGCTTTCGTGCGG
TACTTAAGTGCTCAGCCGCCCAAgctaaaaagtgaaatttttgtttgaag
ttgtttgattgacaccgtctggacattGCATGCTGACAATTCGTGTAAAA
TTGATCCACCTTCTACAAGAAATAGTTTTACATGTGTGATAGGATTACAC
CCAAGTTTTCCTGCTCCATTGTGTCCacagaaaatatgtttttttttgag
aagTGATGTGAAAAAGAAGCTATTTTTTAATGTATggaataccgtaagtt
ggtttaatatcgacatcccttgtttaattctgacacccttctttagagaa
aggaataatatgaaagcttgaattgctgattgaaaaaggattattcttcT
CTGACCACTAAGTAAAGAAAAACTGTTTCAACCTTTCTGTAAATTTCAGC
TGAtgaaaagggtgtcggaattagaggaggggtgtcccAGTGTGGAATCC
ATGCAAAAGCCACGCCGAAGATATTTTGAGGATCAAGAGGGTTACACCCA
ATTGAG
Run BLAST on NCBI

transcript from alignment at scaffold_168:126555..127260

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050288 ID=TCONS_00050288|Name=TCONS_00050288|organism=Clytia hemisphaerica|type=transcript|length=706bp|location=Sequence derived from alignment at scaffold_168:126555..127260 (Clytia hemisphaerica)
CTCAATTGGGTGTAACCCTCTTGATCCTCAAAATATCTTCGGCGTGGCTT
TTGCATGGATTCCACACTgggacacccctcctctaattccgacacccttt
tcaTCAGCTGAAATTTACAGAAAGGTTGAAACAGTTTTTCTTTACTTAGT
GGTCAGAgaagaataatcctttttcaatcagcaattcaagctttcatatt
attcctttctctaaagaagggtgtcagaattaaacaagggatgtcgatat
taaaccaacttacggtattccATACATTAAAAAATAGCTTCTTTTTCACA
TCActtctcaaaaaaaaacatattttctgtGGACACAATGGAGCAGGAAA
ACTTGGGTGTAATCCTATCACACATGTAAAACTATTTCTTGTAGAAGGTG
GATCAATTTTACACGAATTGTCAGCATGCaatgtccagacggtgtcaatc
aaacaacttcaaacaaaaatttcactttttagcTTGGGCGGCTGAGCACT
TAAGTACCGCACGAAAGCGAAAAAATCTAATGCaattgaatcaattgaac
gcaatcaaacaTAATCAAAGGCAATCAAACATAATCAAATACAATGAAAC
GTAATTAAGGCAATCGAATTgcaaattctgggtaatattcaattgcaaTT
CAACTGCATTGAACAATCGAATTACAATTagtcgattgtgttcaattgcg
ttcaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031845XLOC_031845Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050288-exon-scaffold_168-1491911889:126555..127260TCONS_00050288-exon-scaffold_168-1491911889:126555..127260Clytia hemisphaericaexon
TCONS_00050288-exon-scaffold_168-1510915933:126555..127260TCONS_00050288-exon-scaffold_168-1510915933:126555..127260Clytia hemisphaericaexon
TCONS_00050288-exon-scaffold_168-1575043694:126555..127260TCONS_00050288-exon-scaffold_168-1575043694:126555..127260Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_168supercontigscaffold_168:126555..127260 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.948742	0.520906	1.51624	1.60049	1.37931	0.932851	1.59892	1.46062	0.541384	0.637413	0	0.985034	0.980988	1.5284	1.00078	1.39173	0.940334	1.83383	1.48553	0.843176	0.695956	0.791763	0.818472	0.580548	1.22627	1.37519	1.11293	1.06272	2.27221	2.79407
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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