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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050328 ID=TCONS_00050328|Name=TCONS_00050328|organism=Clytia hemisphaerica|type=transcript|length=1181bp
CAACGCGATGATTGACATGATTGGAGAAAATTGTGTTTTCAAAGAgATAT
AAATGAATGAGCAGGAAAGTACACTATGGCTGGTTATGATCATTCGAAAG
GAATTGGAATTAAAGAAATCACTGTTGTTGAAGTCAGGAATCCAATTGTT
CAACATGAAGGTTCATTGAAACAATTCACAGACTATGAAGTCTGTATAAA
AACAACAAGTAAAGCTTTTATCATTCCCCAATCCTCAGTAAGAAGGAGAT
ATTCAGATTTTGTTTGGTTGAAAAAATGGCTGGAAAAACAAAATGATGCT
TTTTCAAGAGTGAGAACACCTAAAATGCCGCCAAAGAAACTTATGGGTAA
GACTGATCCAGATTTTATTCAAGCCAGAATGCGTGGTTTACAGAAATTCT
TGAGAAAGATTATTGAGCACAATGTCTTTCTTTCAGACAAGGCTCTTCAT
CTTTTCTTACAAAGTACCATGAAAGTGAAACAAATTGAATGCTATTTGGT
TGGGAATTCAACAAAAGAGTTTGTCGATAACAGTGATGCTCTTGTATCTC
ATTTTGAAGCTGAAAAGAAGCAGACTACTCAATCTGTGCTTCATAGTATC
AGCGAGAGTTTACCAATTGAGCAAAACGATGATAACCAGAGTGAAAGCTC
TAGATCTAGAGCAGCAAGCTCCTATGGAAAAAGCCCTTCCTACAGTGCAA
GCTCAATCAGTACTAACTCTTTGTTGGACTCATTTGAAGCAATAAGTGTT
TCTGATTGTGAAGCCAATGACCGTGAGGAATTGACGTCAGTTGCTGTTAT
AGAgcatttgaaaataaaacaacttGTGCGTGAAAGTGAGAATAAAGAGG
AAAGTGATGCAGATAGTTTGAAAGGAATGCAGGAGgatgaaaagaatttt
gacCTTTTGGATGATGAACCGGTGAAGGATAAAAACAATGGTTCTCAGAA
TAGTCTGGCTGAATGTGATAGACAGGACAAATAACATAACAAAATGttac
tttaattttttattttgatataaaacatatttttctaaaatatagATAAA
CTACTCTTTCAATCATAGGGTTTGGGTGGAAAGGCTCTTAAGGCCATGTT
AGACACAACATTTTTTGCCAACATTTTAgagaattttctaaaaattggta
TAATTTTACCATATTTGAGCGTGTAAACATG Run BLAST on NCBI protein sequence of TCONS_00050328-protein >TCONS_00050328-protein ID=TCONS_00050328-protein|Name=TCONS_00050328-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
MAGYDHSKGIGIKEITVVEVRNPIVQHEGSLKQFTDYEVCIKTTSKAFII
PQSSVRRRYSDFVWLKKWLEKQNDAFSRVRTPKMPPKKLMGKTDPDFIQA
RMRGLQKFLRKIIEHNVFLSDKALHLFLQSTMKVKQIECYLVGNSTKEFV
DNSDALVSHFEAEKKQTTQSVLHSISESLPIEQNDDNQSESSRSRAASSY
GKSPSYSASSISTNSLLDSFEAISVSDCEANDREELTSVAVIEHLKIKQL
VRESENKEESDADSLKGMQEDEKNFDLLDDEPVKDKNNGSQNSLAECDRQ
DK Run BLAST on NCBI transcript from alignment at scaffold_169:457766..460362+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050328 ID=TCONS_00050328|Name=TCONS_00050328|organism=Clytia hemisphaerica|type=transcript|length=2597bp|location=Sequence derived from alignment at scaffold_169:457766..460362+ (Clytia hemisphaerica)
CAACGCGATGATTGACATGATTGGAGAAAATTGTGTTTTCAAAGAggtaa
aagtttgttttgaaaattttggccgataagagcaagggggggagggggtc
tgaagcttatTGGCCCAATGCCAAtaagaaatttgaaagtttttttcgaa
GACCCCTTATTGCtcattttggcaatttttttttttacttttctgctgat
tcagcatttcattgttgaaaaaattgccgttttcggcaataattgctcaa
aagagcaataattgctgtttttattttaaacacCCTCAACTGATTATATG
TTAACACGTTGGCTAAAGACCCATCGGGTGCATGACTAAAAGAGccattc
cagaaattttctgtATTCATGATATATACACCACTCAAGAGTCTTcagag
aacttttaaaatcttccagaaaaagtgacgtattgggtggaaaattttaa
aatttctcaaTCTCAGCACTCAGCTAAGGCaaaagactctccagtggtgc
atatcatgaataccccCTCTGGATGACACaactttttgcaaaatttatgC
CCTCAAGGAGAGGAGACATTGGAAATTCCACATTtctcatttttgagaaa
atgccttgtaatttgatcatttttgagaaaaagccttggaaatttatctt
ttttgaactttaggcttggaaattttgaatttatcaaAAACGATTTGccc
ttaaaaatcttttgtcgtCTGCCCCCCCCCATATATCAGATATATATATG
CCCAAACTTTTGCAGGCCACTTggcaattttgaattttaaagagTCTTCA
GAGGCAAAAATCCATAAGTTTGTGGTCCAAATTTGGCCTGATTATGTACA
GCACTTAAAATACATAAGAATACTTCTGATGATGGTGATAAAagcttgaa
atttggcacagatgacccttagagggtttaaaacttaattttaaacaata
aCACAAAATTTAGTCACCTGACCAACTGCCAATTAATGTAATCAGATGGC
TGagtaagaaatttattttttgaaaatattcaaaatctgatggtcaCAAA
GAGCAagaaattctgatgaaaattgaggtataaagcacgttttgaaaatg
ttctaaCAAAAACTTCATCAgtctttccaggcaaaacttaaaaaacctTA
TAATGTTGGAacatttgaccaaattttatgttttatataagaattcATAT
ACATATATCTGCAGACACATGTCtcgtccttcccaggactcatcAGTGCT
GCTCAAgtaagcgagcatagactgctgttgtcaccagagtgctGAAACAC
CATGAGTGTTGAGCTTtgcataatcgcttgtggtaagCGGAGAAGCAACG
CTTTAAATCAGATGCCCTCATCAAGGGGTTGTAAACATGATTTTTTGTCT
TCTCCCCTGAGCAAAACTACctctataatatttttttaatactttATAAT
GCAAAATAATAGATATAAATGAATGAGCAGGAAAGTACACTATGGCTGGT
TATGATCATTCGAAAGGAATTGGAATTAAAGAAATCACTGTTGTTGAAGT
CAGGAATCCAATTGTTCAACATGAAGGTTCATTGAAACAATTCACAGACT
ATGAAGTCTGTATAAAAACAACAAGTAAAGCTTTTATCATTCCCCAATCC
TCAGTAAGAAGGAGATATTCAGATTTTGTTTGGTTGAAAAAATGGCTGGA
AAAACAAAATGATGCTTTTTCAAGAGTGAGAACACCTAAAATGCCGCCAA
AGAAACTTATGGGTAAGACTGATCCAGATTTTATTCAAGCCAGAATGCGT
GGTTTACAGAAATTCTTGAGAAAGATTATTGAGCACAATGTCTTTCTTTC
AGACAAGGCTCTTCATCTTTTCTTACAAAGTACCATGAAAGTGAAACAAA
TTGAATGCTATTTGGTTGGGAATTCAACAAAAGAGTTTGTCGATAACAGT
GATGCTCTTGTATCTCATTTTGAAGCTGAAAAGAAGCAGACTACTCAATC
TGTGCTTCATAGTATCAGCGAGAGTTTACCAATTGAGCAAAACGATGATA
ACCAGAGTGAAAGCTCTAGATCTAGAGCAGCAAGCTCCTATGGAAAAAGC
CCTTCCTACAGTGCAAGCTCAATCAGTACTAACTCTTTGTTGGACTCATT
TGAAGCAATAAGTGTTTCTGATTGTGAAGCCAATGACCGTGAGGAATTGA
CGTCAGTTGCTGTTATAGAgcatttgaaaataaaacaacttGTGCGTGAA
AGTGAGAATAAAGAGGAAAGTGATGCAGATAGTTTGAAAGGAATGCAGGA
GgatgaaaagaattttgacCTTTTGGATGATGAACCGGTGAAGGATAAAA
ACAATGGTTCTCAGAATAGTCTGGCTGAATGTGATAGACAGGACAAATAA
CATAACAAAATGttactttaattttttattttgatataaaacatattttt
ctaaaatatagATAAACTACTCTTTCAATCATAGGGTTTGGGTGGAAAGG
CTCTTAAGGCCATGTTAGACACAACATTTTTTGCCAACATTTTAgagaat
tttctaaaaattggtaTAATTTTACCATATTTGAGCGTGTAAACATG Coding sequence (CDS) from alignment at scaffold_169:457766..460362+ >TCONS_00050328 ID=TCONS_00050328|Name=TCONS_00050328|organism=Clytia hemisphaerica|type=CDS|length=909bp|location=Sequence derived from alignment at scaffold_169:457766..460362+ (Clytia hemisphaerica)
ATGGCTGGTTATGATCATTCGAAAGGAATTGGAATTAAAGAAATCACTGT
TGTTGAAGTCAGGAATCCAATTGTTCAACATGAAGGTTCATTGAAACAAT
TCACAGACTATGAAGTCTGTATAAAAACAACAAGTAAAGCTTTTATCATT
CCCCAATCCTCAGTAAGAAGGAGATATTCAGATTTTGTTTGGTTGAAAAA
ATGGCTGGAAAAACAAAATGATGCTTTTTCAAGAGTGAGAACACCTAAAA
TGCCGCCAAAGAAACTTATGGGTAAGACTGATCCAGATTTTATTCAAGCC
AGAATGCGTGGTTTACAGAAATTCTTGAGAAAGATTATTGAGCACAATGT
CTTTCTTTCAGACAAGGCTCTTCATCTTTTCTTACAAAGTACCATGAAAG
TGAAACAAATTGAATGCTATTTGGTTGGGAATTCAACAAAAGAGTTTGTC
GATAACAGTGATGCTCTTGTATCTCATTTTGAAGCTGAAAAGAAGCAGAC
TACTCAATCTGTGCTTCATAGTATCAGCGAGAGTTTACCAATTGAGCAAA
ACGATGATAACCAGAGTGAAAGCTCTAGATCTAGAGCAGCAAGCTCCTAT
GGAAAAAGCCCTTCCTACAGTGCAAGCTCAATCAGTACTAACTCTTTGTT
GGACTCATTTGAAGCAATAAGTGTTTCTGATTGTGAAGCCAATGACCGTG
AGGAATTGACGTCAGTTGCTGTTATAGAgcatttgaaaataaaacaactt
GTGCGTGAAAGTGAGAATAAAGAGGAAAGTGATGCAGATAGTTTGAAAGG
AATGCAGGAGgatgaaaagaattttgacCTTTTGGATGATGAACCGGTGA
AGGATAAAAACAATGGTTCTCAGAATAGTCTGGCTGAATGTGATAGACAG
GACAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050328-exon-scaffold_169-1491911889:457766..457811 | TCONS_00050328-exon-scaffold_169-1491911889:457766..457811 | Clytia hemisphaerica | exon |
| TCONS_00050328-exon-scaffold_169-1510915933:457766..457811 | TCONS_00050328-exon-scaffold_169-1510915933:457766..457811 | Clytia hemisphaerica | exon |
| TCONS_00050328-exon-scaffold_169-1575043694:457766..457811 | TCONS_00050328-exon-scaffold_169-1575043694:457766..457811 | Clytia hemisphaerica | exon |
| TCONS_00050328-exon-scaffold_169-1491911889:459228..460362 | TCONS_00050328-exon-scaffold_169-1491911889:459228..460362 | Clytia hemisphaerica | exon |
| TCONS_00050328-exon-scaffold_169-1510915933:459228..460362 | TCONS_00050328-exon-scaffold_169-1510915933:459228..460362 | Clytia hemisphaerica | exon |
| TCONS_00050328-exon-scaffold_169-1575043694:459228..460362 | TCONS_00050328-exon-scaffold_169-1575043694:459228..460362 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_169 | supercontig | scaffold_169:457766..460362 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001683 | Phox |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0035091 | phosphatidylinositol binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0035091 |
phosphatidylinositol binding |
Blast
BLAST of TCONS_00050328 vs. Swiss-Prot (Human)
Match: SNX11 (Sorting nexin-11 OS=Homo sapiens GN=SNX11 PE=1 SV=2) HSP 1 Score: 115.546 bits (288), Expect = 3.259e-29 Identity = 62/147 (42.18%), Postives = 90/147 (61.22%), Query Frame = 1
Query: 112 KEITVVEVRNPIVQHEGSLKQFTDYEVCIKTTSKAFIIPQSSVRRRYSDFVWLKKWLEKQNDAFSRVRTPKMPPKKLMGKTDPDFIQARMRGLQKFLRKIIEHNVFLSDKALHLFLQSTMKVKQIECYLVGNSTKEFVDNSDALVSH 552
+E+ V V++P VQ+EGS + DY++ + T SKAF S VRRRY +FVWL+K L++ V P++P K T +FI+ R +GLQ FL K+++ V LSD LHLFLQS + V +IE + G ST + SDA++ +
Sbjct: 14 EEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGL---VPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQGRST---MTVSDAILRY 154
The following BLAST results are available for this feature:
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