Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050335 ID=TCONS_00050335|Name=TCONS_00050335|organism=Clytia hemisphaerica|type=transcript|length=963bpRun BLAST on NCBI protein sequence of TCONS_00050335-protein >TCONS_00050335-protein ID=TCONS_00050335-protein|Name=TCONS_00050335-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp MAGHFSEFGMMPEMVKGTEDMGWMLPTDIQAEAIPMILGGGDVLMAAETGRun BLAST on NCBI transcript from alignment at scaffold_169:2368..14552- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050335 ID=TCONS_00050335|Name=TCONS_00050335|organism=Clytia hemisphaerica|type=transcript|length=12185bp|location=Sequence derived from alignment at scaffold_169:2368..14552- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_169:2368..14552- >TCONS_00050335 ID=TCONS_00050335|Name=TCONS_00050335|organism=Clytia hemisphaerica|type=CDS|length=12222bp|location=Sequence derived from alignment at scaffold_169:2368..14552- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050335 vs. Swiss-Prot (Human)
Match: DDX1 (ATP-dependent RNA helicase DDX1 OS=Homo sapiens GN=DDX1 PE=1 SV=2) HSP 1 Score: 280.796 bits (717), Expect = 1.626e-87 Identity = 156/292 (53.42%), Postives = 202/292 (69.18%), Query Frame = 1 Query: 103 FSEFGMMPEMVKGTEDMGWMLPTDIQAEAIPMILGGGDVLMAAETGSGKTGAFCLPVIQIVYENLVTVKEGKSTNQKMNN-----NKWEMNKFDREPGLAIGEDGLLCQARQ-QRWQGARSTLGVVEGKYYYEVQITDEGLCRVGFSTDTAVFDVGTDNESFGFGGTGKKSYRRQFDTYGEPFGINDILGCYLNLEAGSISFSKNGNVFEKAFDIPKNLDNRAFFASVTLKNAELHFNFGNKPFKHPPAGHFQALCKATK--TIQSR-----RLSAPKKFTNICSPAALIME 939 FSE G+MPE+ + E+M W+LPTDIQAE+IP+ILGGGDVLMAAETGSGKTGAF +PVIQIVYE L +EGK + NKW+MN +DR AIG DGL CQ+R+ + W G R+T G+++GK+YYEV D+GLCRVG+ST A D+GTD FGFGGTGKKS+ +QFD YGE F ++D +GCYL+++ G + FSKNG AF+IP ++ N+A F + LKNAEL FNFG + FK PP F AL KA ++S+ +++ K N +P ALI+E Sbjct: 4 FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--APKALIVE 293 The following BLAST results are available for this feature:
BLAST of TCONS_00050335 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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