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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050346 ID=TCONS_00050346|Name=TCONS_00050346|organism=Clytia hemisphaerica|type=transcript|length=1894bp
TCGATTTAGtttgcttcaaaatttcaaactttagaATTAATAAGATGGTC
TGTATAATAATTATTTGTCAAAAACGTTTTCGCGACGATTTTGTCTTTCT
CTTTCGTTCAGTTCATGTAATTTCATTCATTCCACCCGCCAAGACTTTGG
ACGTTGGAAGTGTTCGTTTTCGTAATTTGGAAATCTTTAAGAACTGATTG
TAAAATGGATGTTAAAGATATATTTTGTGACCAGGATGAATTATTATGTT
ACGAGGGCCTTGGCTACGATAATGATTTGTATAGTTCACCAGCTTACAGC
GATGACAGTGGATTTAGTGGTCAAAACTTCTCGCTTGAAACATTGTTGGA
TGACGTTTTGCCACCAGTCATAAATGATGTTGAATTTACCAACATCAAAG
ATTTCAGTCGATCTGATAGTGTAAGTTCCAATATTCATGATCATCCTTAT
TCTTTACCAGACCAAACAATTGAACCAGTTGTAATTGTGTCTGATACTGA
TGAGATAAATGTAGATGAACTTCCTGATAATGCTGTTGTAAATAACGAGC
CAGTTTCTCGTCAAAGCATTGCTAAGCCAGTAGTGacaagaaaaagaaat
cttaGTGACTGTGAGCCTGCTGAGATCCTGtccaaatcttcaaaaattga
cTCTAAAAGTGACCATAATATTGATGTACTTAAATGTGATGATGAAACCT
TTTCTTACAAGGATGAAAATGGTAAAGTAATTGTTGTTGATAGGAGTAGG
AAAAATGCTGAAATGGCACGATTGAATAGGCAAAGAAAGAAGAAGCACCT
ATCCAACCTCGAAACTGAAGTCAAAACTCTTAGGAGCCAAAATAACAAAC
TCTCATTGAAAACTACCAAACAAGAGAAAAAGATCAAAACTCTAGAAGAT
GAAGTGGCTTATTTGATGAGTGTTATTCGTAATCAGACCATGCTCTCTTC
AGTTTTAAAAGCTGTCTCTACAGTACCAGGAGTTTCAATAGGAGCAAAAA
CACCTCCAGGTCCAAAACTTTACGAGAGGCTGCTCCCAGGCAAAAGGATG
CCCACACATGACGATGATGAAGATGCAGTTGATTACAATGGTGGTGTCTG
TCTTCATGTTTCTAACAATAAAGTCTcccttgaattttgctccactTGCA
ACAAGAATCAATGATAGACTGGAAATTAATCaatagatgtttgtttttgt
atatatGTTGTAAATAGTTCTCTTTATAGCTTTACTAAAACTTCTGTTTT
TTGTTTCAGGAAGCCACTACTGCTCGAACATGAGACATCAATGTTTCAGA
AAGTTTGAGAATCGGATCGCATATTGGGGAAAGCTTGCAGCAAATAGTTG
CTCACTACAGCATTTCCTTAAAGGTGGTAACTTTTCATGAAAGGGTTTTA
AGTTCAAGGAATTTTGAAAGACAGATTCCTTTTACTTAACCTTTCAACAT
TACCCTATCCTCTGCCCATTTTCTTAATCTTGATGAGCATTTTGTactgt
gttttgatttttaagctgATGGCaaatgagaaattttcaatGGATAGAAA
CTTAAGTAATACATAGTTTTTTTCTAAATCCCTCCTTTGTCCCAAAATAC
AAGCTTTTCATGGTTACTATAAATTTATTCTTGTAATTTCAGTAACAGGC
AAGTGATGTGTCAAGTTGACGGGATTTTATGGATTACATCAATGGTAACT
AACAccctaaaattaattttttgtatatACATTGACTTagaagtaaaaaa
agaaaatcaaaattttgtaaatagaaAAATCGCCTCtctcatttgatttt
tggacctaccgggaggtcctttaatttgaccgttgtccgttcgtctgtta
caagcttttctcgggattggctcattagttttttttaatttttt Run BLAST on NCBI transcript from alignment at scaffold_169:417363..419444- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050346 ID=TCONS_00050346|Name=TCONS_00050346|organism=Clytia hemisphaerica|type=transcript|length=2082bp|location=Sequence derived from alignment at scaffold_169:417363..419444- (Clytia hemisphaerica)
TCGATTTAGTTTGCTTCAAAATTTCAAACTTTAGAATTAATAAGATGGTC
TGTATAATAATTATTTGTCAAAAACGTTTTCGCGACGATTTTGTCTTTCT
CTTTCGTTCAGTTCATGTAATTTCATTCATTCCACCCGCCAAGACTTTGG
ACGTTGGAAGTGTTCGTTTTCGTAATTTGGAAATCTTTAAGAACTGATTG
TAAAATGGATGTTAAAGATATATTTTGTGACCAGGATGAATTATTATGTT
ACGAGGGCCTTGGCTACGATAATGATTTGTATAGTTCACCAGCTTACAGC
GATGACAGTGGATTTAGTGGTCAAAACTTCTCGCTTGAAACATTGTTGGA
TGACGTTTTGCCACCAGTCATAAATGATGTTGAATTTACCAACATCAAAG
ATTTCAGTCGATCTGATAGTGTAAGTTCCAATATTCATGATCATCCTTAT
TCTTTACCAGACCAAACAATTGAACCAGTTGTAATTGTGTCTGATACTGA
TGAGATAAATGTAGATGAACTTCCTGATAATGCTGTTGTAAATAACGAGC
CAGTTTCTCGTCAAAGCATTGCTAAGCCAGTAGTGACAAGAAAAAGAAAT
CTTAGTGACTGTGAGCCTGCTGAGATCCTGTCCAAATCTTCAAAAATTGA
CTCTAAAAGTGACCATAATATTGATGTACTTAAATGTGATGATGAAACCT
TTTCTTACAAGGATGAAAATGGTAAAGTAATTGTTGTTGATAGGAGTAGG
AAAAATGCTGAAATGGCACGATTGAATAGGCAAAGAAAGAAGAAGCACCT
ATCCAACCTCGAAACTGAAGTCAAAACTCTTAGGAGCCAAAATAACAAAC
TCTCATTGAAAACTACCAAACAAGAGAAAAAGATCAAAACTCTAGAAGAT
GAAGTGGCTTATTTGATGAGTGTTATTCGTAATCAGACCATGCTCTCTTC
AGTTTTAAAAGCTGTCTCTACAGTACCAGGAGTTTCAATAGGAGCAAAAA
CACCTCCAGGTCCAAAACTTTACGAGAGGCTGCTCCCAGGCAAAAGGATG
CCCACACATGACGATGATGAAGATGCAGTTGATTACAATGGTGGTGTCTG
TCTTCATGTTTCTAACAATAAAGTCTCCCTTGAATTTTGCTCCACTTGCA
ACAAGAATCAATGATAGACTGGAAATTAATCAATAGATGTTTGTTTTTGT
ATATATGTTGTAAATAGTTCTCTTTATAGCTTTACTAAAACTTCTGTTTT
TTGTTTCAGGAAGCCACTACTGCTCGAACATGAGACATCAATGTTTCAGA
AAGTTTGAGAATCGGTTAGTATTTAACGTGCTTCCTTTAAAATAGTTTTT
ATGGTGTTTTCAGAACTTTTGTACGTGAATCATAAATCTTATCTACTGTC
TCTTTTCAAGCAAAATTACAAACCTTTGAAAGTTTTTAGGGCCAGCTGTA
GTACATTTTAAACCAGCATCATTTTTAATTAAAAACTTTGTTTCTTCTTA
AGGATCGCATATTGGGGAAAGCTTGCAGCAAATAGTTGCTCACTACAGCA
TTTCCTTAAAGGTGGTAACTTTTCATGAAAGGGTTTTAAGTTCAAGGAAT
TTTGAAAGACAGATTCCTTTTACTTAACCTTTCAACATTACCCTATCCTC
TGCCCATTTTCTTAATCTTGATGAGCATTTTGTACTGTGTTTTGATTTTT
AAGCTGATGGCAAATGAGAAATTTTCAATGGATAGAAACTTAAGTAATAC
ATAGTTTTTTTCTAAATCCCTCCTTTGTCCCAAAATACAAGCTTTTCATG
GTTACTATAAATTTATTCTTGTAATTTCAGTAACAGGCAAGTGATGTGTC
AAGTTGACGGGATTTTATGGATTACATCAATGGTAACTAACACCCTAAAA
TTAATTTTTTGTATATACATTGACTTAGAAGTAAAAAAAGAAAATCAAAA
TTTTGTAAATAGAAAAATCGCCTCTCTCATTTGATTTTTGGACCTACCGG
GAGGTCCTTTAATTTGACCGTTGTCCGTTCGTCTGTTACAAGCTTTTCTC
GGGATTGGCTCATTAGTTTTTTTTAATTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050346-exon-scaffold_169-1575043694:418131..419444 | TCONS_00050346-exon-scaffold_169-1575043694:418131..419444 | Clytia hemisphaerica | exon |
| TCONS_00050346-exon-scaffold_169-1575043694:417363..417942 | TCONS_00050346-exon-scaffold_169-1575043694:417363..417942 | Clytia hemisphaerica | exon |
| TCONS_00050346-exon-scaffold_169-1510915933:418131..419444 | TCONS_00050346-exon-scaffold_169-1510915933:418131..419444 | Clytia hemisphaerica | exon |
| TCONS_00050346-exon-scaffold_169-1510915933:417363..417942 | TCONS_00050346-exon-scaffold_169-1510915933:417363..417942 | Clytia hemisphaerica | exon |
| TCONS_00050346-exon-scaffold_169-1491911889:418131..419444 | TCONS_00050346-exon-scaffold_169-1491911889:418131..419444 | Clytia hemisphaerica | exon |
| TCONS_00050346-exon-scaffold_169-1491911889:417363..417942 | TCONS_00050346-exon-scaffold_169-1491911889:417363..417942 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_169 | supercontig | scaffold_169:417363..419444 - |
Blast
The following BLAST results are available for this feature:
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