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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050348 ID=TCONS_00050348|Name=TCONS_00050348|organism=Clytia hemisphaerica|type=transcript|length=1675bp
tTCATTTAAAGattaacaaatattttttattgactaaTAGTTTGTCTAAA
TCGATTTAGtttgcttcaaaatttcaaactttagaATTAATAAGATGGTC
TGTATAATAATTATTTGTCAAAAACGTTTTCGCGACGATTTTGTCTTTCT
CTTTCGTTCAGTTCATGTAATTTCATTCATTCCACCCGCCAAGACTTTGG
ACGTTGGAAGTGTTCGTTTTCGTAATTTGGAAATCTTTAAGAACTGATTG
TAAAATGGATGTTAAAGATATATTTTGTGACCAGGATGAATTATTATGTT
ACGAGGGCCTTGGCTACGATAATGATTTGTATAGTTCACCAGCTTACAGC
GATGACAGTGGATTTAGTGGTCAAAACTTCTCGCTTGAAACATTGTTGGA
TGACGTTTTGCCACCAGTCATAAATGATGTTGAATTTACCAACATCAAAG
ATTTCAGTCGATCTGATAGTGTAAGTTCCAATATTCATGATCATCCTTAT
TCTTTACCAGACCAAACAATTGAACCAGTTGTAATTGTGTCTGATACTGA
TGAGATAAATGTAGATGAACTTCCTGATAATGCTGTTGTAAATAACGAGC
CAGTTTCTCGTCAAAGCATTGCTAAGCCAGTAGTGacaagaaaaagaaat
cttaGTGACTGTGAGCCTGCTGAGATCCTGtccaaatcttcaaaaattga
cTCTAAAAGTGACCATAATATTGATGTACTTAAATGTGATGATGAAACCT
TTTCTTACAAGGATGAAAATGGTAAAGTAATTGTTGTTGATAGGAGTAGG
AAAAATGCTGAAATGGCACGATTGAATAGGCAAAGAAAGAAGAAGCACCT
ATCCAACCTCGAAACTGAAGTCAAAACTCTTAGGAGCCAAAATAACAAAC
TCTCATTGAAAACTACCAAACAAGAGAAAAAGATCAAAACTCTAGAAGAT
GAAGTGGCTTATTTGATGAGTGTTATTCGTAATCAGACCATGCTCTCTTC
AGTTTTAAAAGCTGTCTCTACAGTACCAGGAGTTTCAATAGGAGCAAAAA
CACCTCCAGGTCCAAAACTTTACGAGAGGCTGCTCCCAGGCAAAAGGATG
CCCACACATGACGATGATGAAGATGCAGTTGATTACAATGGTGGTGTCTG
TCTTCATGTTTCTAACAATAAAGTCTcccttgaattttgctccactTGCA
ACAAGAATCAATGATAGACTGGAAATTAATCaatagatgtttgtttttgt
atatatGTTGTAAATAGTTCTCTTTATAGCTTTACTAAAACTTCTGTTTT
TTGTTTCAGGAAGCCACTACTGCTCGAACATGAGACATCAATGTTTCAGA
AAGTTTGAGAATCGGATCGCATATTGGGGAAAGCTTGCAGCAAATAGTTG
CTCACTACAGCATTTCCTTAAAGTAACAGGCAAGTGATGTGTCAAGTTGA
CGGGATTTTATGGATTACATCAATGGTAACTAACAccctaaaattaattt
tttgtatatACATTGACTTagaagtaaaaaaagaaaatcaaaattttgta
aatagaaAAATCGCCTCtctcatttgatttttggacctaccgggaggtcc
tttaatttgaccgttgtccgttcgtctgttacaagcttttctcgggattg
gctcattagttttttttaatttttt Run BLAST on NCBI protein sequence of TCONS_00050348-protein >TCONS_00050348-protein ID=TCONS_00050348-protein|Name=TCONS_00050348-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MDVKDIFCDQDELLCYEGLGYDNDLYSSPAYSDDSGFSGQNFSLETLLDD
VLPPVINDVEFTNIKDFSRSDSVSSNIHDHPYSLPDQTIEPVVIVSDTDE
INVDELPDNAVVNNEPVSRQSIAKPVVTRKRNLSDCEPAEILSKSSKIDS
KSDHNIDVLKCDDETFSYKDENGKVIVVDRSRKNAEMARLNRQRKKKHLS
NLETEVKTLRSQNNKLSLKTTKQEKKIKTLEDEVAYLMSVIRNQTMLSSV
LKAVSTVPGVSIGAKTPPGPKLYERLLPGKRMPTHDDDEDAVDYNGGVCL
HVSNNKVSLEFCSTCNKNQ Run BLAST on NCBI transcript from alignment at scaffold_169:417363..419494- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050348 ID=TCONS_00050348|Name=TCONS_00050348|organism=Clytia hemisphaerica|type=transcript|length=2132bp|location=Sequence derived from alignment at scaffold_169:417363..419494- (Clytia hemisphaerica)
TTCATTTAAAGATTAACAAATATTTTTTATTGACTAATAGTTTGTCTAAA
TCGATTTAGTTTGCTTCAAAATTTCAAACTTTAGAATTAATAAGATGGTC
TGTATAATAATTATTTGTCAAAAACGTTTTCGCGACGATTTTGTCTTTCT
CTTTCGTTCAGTTCATGTAATTTCATTCATTCCACCCGCCAAGACTTTGG
ACGTTGGAAGTGTTCGTTTTCGTAATTTGGAAATCTTTAAGAACTGATTG
TAAAATGGATGTTAAAGATATATTTTGTGACCAGGATGAATTATTATGTT
ACGAGGGCCTTGGCTACGATAATGATTTGTATAGTTCACCAGCTTACAGC
GATGACAGTGGATTTAGTGGTCAAAACTTCTCGCTTGAAACATTGTTGGA
TGACGTTTTGCCACCAGTCATAAATGATGTTGAATTTACCAACATCAAAG
ATTTCAGTCGATCTGATAGTGTAAGTTCCAATATTCATGATCATCCTTAT
TCTTTACCAGACCAAACAATTGAACCAGTTGTAATTGTGTCTGATACTGA
TGAGATAAATGTAGATGAACTTCCTGATAATGCTGTTGTAAATAACGAGC
CAGTTTCTCGTCAAAGCATTGCTAAGCCAGTAGTGACAAGAAAAAGAAAT
CTTAGTGACTGTGAGCCTGCTGAGATCCTGTCCAAATCTTCAAAAATTGA
CTCTAAAAGTGACCATAATATTGATGTACTTAAATGTGATGATGAAACCT
TTTCTTACAAGGATGAAAATGGTAAAGTAATTGTTGTTGATAGGAGTAGG
AAAAATGCTGAAATGGCACGATTGAATAGGCAAAGAAAGAAGAAGCACCT
ATCCAACCTCGAAACTGAAGTCAAAACTCTTAGGAGCCAAAATAACAAAC
TCTCATTGAAAACTACCAAACAAGAGAAAAAGATCAAAACTCTAGAAGAT
GAAGTGGCTTATTTGATGAGTGTTATTCGTAATCAGACCATGCTCTCTTC
AGTTTTAAAAGCTGTCTCTACAGTACCAGGAGTTTCAATAGGAGCAAAAA
CACCTCCAGGTCCAAAACTTTACGAGAGGCTGCTCCCAGGCAAAAGGATG
CCCACACATGACGATGATGAAGATGCAGTTGATTACAATGGTGGTGTCTG
TCTTCATGTTTCTAACAATAAAGTCTCCCTTGAATTTTGCTCCACTTGCA
ACAAGAATCAATGATAGACTGGAAATTAATCAATAGATGTTTGTTTTTGT
ATATATGTTGTAAATAGTTCTCTTTATAGCTTTACTAAAACTTCTGTTTT
TTGTTTCAGGAAGCCACTACTGCTCGAACATGAGACATCAATGTTTCAGA
AAGTTTGAGAATCGGTTAGTATTTAACGTGCTTCCTTTAAAATAGTTTTT
ATGGTGTTTTCAGAACTTTTGTACGTGAATCATAAATCTTATCTACTGTC
TCTTTTCAAGCAAAATTACAAACCTTTGAAAGTTTTTAGGGCCAGCTGTA
GTACATTTTAAACCAGCATCATTTTTAATTAAAAACTTTGTTTCTTCTTA
AGGATCGCATATTGGGGAAAGCTTGCAGCAAATAGTTGCTCACTACAGCA
TTTCCTTAAAGGTGGTAACTTTTCATGAAAGGGTTTTAAGTTCAAGGAAT
TTTGAAAGACAGATTCCTTTTACTTAACCTTTCAACATTACCCTATCCTC
TGCCCATTTTCTTAATCTTGATGAGCATTTTGTACTGTGTTTTGATTTTT
AAGCTGATGGCAAATGAGAAATTTTCAATGGATAGAAACTTAAGTAATAC
ATAGTTTTTTTCTAAATCCCTCCTTTGTCCCAAAATACAAGCTTTTCATG
GTTACTATAAATTTATTCTTGTAATTTCAGTAACAGGCAAGTGATGTGTC
AAGTTGACGGGATTTTATGGATTACATCAATGGTAACTAACACCCTAAAA
TTAATTTTTTGTATATACATTGACTTAGAAGTAAAAAAAGAAAATCAAAA
TTTTGTAAATAGAAAAATCGCCTCTCTCATTTGATTTTTGGACCTACCGG
GAGGTCCTTTAATTTGACCGTTGTCCGTTCGTCTGTTACAAGCTTTTCTC
GGGATTGGCTCATTAGTTTTTTTTAATTTTTT Coding sequence (CDS) from alignment at scaffold_169:417363..419494- >TCONS_00050348 ID=TCONS_00050348|Name=TCONS_00050348|organism=Clytia hemisphaerica|type=CDS|length=960bp|location=Sequence derived from alignment at scaffold_169:417363..419494- (Clytia hemisphaerica)
ATGGATGTTAAAGATATATTTTGTGACCAGGATGAATTATTATGTTACGA
GGGCCTTGGCTACGATAATGATTTGTATAGTTCACCAGCTTACAGCGATG
ACAGTGGATTTAGTGGTCAAAACTTCTCGCTTGAAACATTGTTGGATGAC
GTTTTGCCACCAGTCATAAATGATGTTGAATTTACCAACATCAAAGATTT
CAGTCGATCTGATAGTGTAAGTTCCAATATTCATGATCATCCTTATTCTT
TACCAGACCAAACAATTGAACCAGTTGTAATTGTGTCTGATACTGATGAG
ATAAATGTAGATGAACTTCCTGATAATGCTGTTGTAAATAACGAGCCAGT
TTCTCGTCAAAGCATTGCTAAGCCAGTAGTGACAAGAAAAAGAAATCTTA
GTGACTGTGAGCCTGCTGAGATCCTGTCCAAATCTTCAAAAATTGACTCT
AAAAGTGACCATAATATTGATGTACTTAAATGTGATGATGAAACCTTTTC
TTACAAGGATGAAAATGGTAAAGTAATTGTTGTTGATAGGAGTAGGAAAA
ATGCTGAAATGGCACGATTGAATAGGCAAAGAAAGAAGAAGCACCTATCC
AACCTCGAAACTGAAGTCAAAACTCTTAGGAGCCAAAATAACAAACTCTC
ATTGAAAACTACCAAACAAGAGAAAAAGATCAAAACTCTAGAAGATGAAG
TGGCTTATTTGATGAGTGTTATTCGTAATCAGACCATGCTCTCTTCAGTT
TTAAAAGCTGTCTCTACAGTACCAGGAGTTTCAATAGGAGCAAAAACACC
TCCAGGTCCAAAACTTTACGAGAGGCTGCTCCCAGGCAAAAGGATGCCCA
CACATGACGATGATGAAGATGCAGTTGATTACAATGGTGGTGTCTGTCTT
CATGTTTCTAACAATAAAGTCTCCCTTGAATTTTGCTCCACTTGCAACAA
GAATCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050348-exon-scaffold_169-1575043694:418131..419494 | TCONS_00050348-exon-scaffold_169-1575043694:418131..419494 | Clytia hemisphaerica | exon |
| TCONS_00050348-exon-scaffold_169-1575043694:417884..417942 | TCONS_00050348-exon-scaffold_169-1575043694:417884..417942 | Clytia hemisphaerica | exon |
| TCONS_00050348-exon-scaffold_169-1575043694:417363..417614 | TCONS_00050348-exon-scaffold_169-1575043694:417363..417614 | Clytia hemisphaerica | exon |
| TCONS_00050348-exon-scaffold_169-1510915933:418131..419494 | TCONS_00050348-exon-scaffold_169-1510915933:418131..419494 | Clytia hemisphaerica | exon |
| TCONS_00050348-exon-scaffold_169-1510915933:417884..417942 | TCONS_00050348-exon-scaffold_169-1510915933:417884..417942 | Clytia hemisphaerica | exon |
| TCONS_00050348-exon-scaffold_169-1510915933:417363..417614 | TCONS_00050348-exon-scaffold_169-1510915933:417363..417614 | Clytia hemisphaerica | exon |
| TCONS_00050348-exon-scaffold_169-1491911889:418131..419494 | TCONS_00050348-exon-scaffold_169-1491911889:418131..419494 | Clytia hemisphaerica | exon |
| TCONS_00050348-exon-scaffold_169-1491911889:417884..417942 | TCONS_00050348-exon-scaffold_169-1491911889:417884..417942 | Clytia hemisphaerica | exon |
| TCONS_00050348-exon-scaffold_169-1491911889:417363..417614 | TCONS_00050348-exon-scaffold_169-1491911889:417363..417614 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_169 | supercontig | scaffold_169:417363..419494 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004827 | bZIP |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
BLAST of TCONS_00050348 vs. Swiss-Prot (Human)
Match: ZHANG (CREB/ATF bZIP transcription factor OS=Homo sapiens GN=CREBZF PE=1 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 8.973e-16 Identity = 46/135 (34.07%), Postives = 76/135 (56.30%), Query Frame = 3
Query: 819 RLNRQRKKKHLSNLETEVKTLRSQNNKLSLKTTKQEKKIKTLEDEVAYLMSVIRNQTMLSSVLKAVSTVP---GVSIGAKTPPGPKLYERLLPGKRMPTHDDDEDAV---DYNGGVCLHVSNNKVSLEFCSTCNK 1205
RLNR +KK+++ LE+ V+ L ++N +L + + K+++ L++E YL +V+ N+T L+ +L +S V S+ +P G Y +P +D + D GGVCLHV +KVS+EFCS C +
Sbjct: 219 RLNRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLRAVLANETGLARLLSRLSGVGLRLTTSLFRDSPAGDHDYA-------LPVGKQKQDLLEEDDSAGGVCLHVDKDKVSVEFCSACAR 346
The following BLAST results are available for this feature:
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