TCONS_00050350 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050350
Unique NameTCONS_00050350
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050350 ID=TCONS_00050350|Name=TCONS_00050350|organism=Clytia hemisphaerica|type=transcript|length=407bp
ATCAAACAATTCACAATTTCAAATcacattgaaaaatgaaaatgtgaaTT
ACCAAATTCCATCATGCCAAACTCACCGCAAAAGAAAGGAAGTCCAACAC
CTGCAGAATCTGCACCAAGAATTTTGCGGTTCCTTGTCCGAATATGGGGT
GTTGTCGCTGGGCTTTTGTATTTGGTTTGCTGGTTCTATGTTTAGAAGCA
CCAATGCTTTGTCAATTTTCAGAGATAGCTACAAAACTGAGTGATTGGGT
TGAaagtcactttcgattttggtTAAGAGCAGCTCTATATTTATTaGCTG
GAGTGCCACCAATAGTAATGTGTCTCGAATTATCCACTTTTATTGGTAGT
GGATCATGTGTCGTACTTGCAGCCCTGTACGGAACACTTGCAATTGGCAG
AAAGTAA
Run BLAST on NCBI

transcript from alignment at scaffold_169:502205..506734-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050350 ID=TCONS_00050350|Name=TCONS_00050350|organism=Clytia hemisphaerica|type=transcript|length=4530bp|location=Sequence derived from alignment at scaffold_169:502205..506734- (Clytia hemisphaerica)
ATCAAACAATTCACAATTTCAAATCACATTGAAAAATGAAAATGTGAATT
ACCAAATTCCATCATGCCAAACTCACCGCAAAAGAAAGGAAGTCCAACAC
CTGCAGAATCTGCACCAAGAATTTTGCGGTTCCTTGTCCGAATATGGGGT
GTTGTCGCTGGGCTTTGTAAGTATATCATTGTTAGTTATAATAGGTGTCA
GATTTTATAGAGAGTAGACAATTTTGTTACTTTTTATGGTTTTTTAGCAG
CCTTTCTGGGTGGGTACACAAAGTTTAAGGACAGGATTTCAATGGTATAA
TTTTTCCTTGGGGGCATCTGTGACATGCTCTGAAAACTGGATTGTATGAA
ACGTGGGACTGCTGCATTTCTGGTCTGTTCAATTGTATTTAATTATGTTC
GATTGATTCAACTGTATTAGATTTTATTCGCTTTAGTACGGTACTTTAAA
GCGCTCGGCCGTCCACGCTAAAAAGCCCTAACCGAGTGATCCAATTTAAT
TTAATCACAATCAAACTCATCAAACGTAATCGAACGAAATCAAAGATTAA
TCAAATGTAATTGACAATCAATCAAACCAATCGAACATAGTCAACTATCA
ATCGAACCAATCTAACCTTACTCGAACACAGTCGAATATTACCCAGGAAT
CGGCCGTTCGATTGAGATTCGATTACGTTCGACAATCGAATCGCAATTAT
TCGATTGCGTTTGATTACATTCAATTGAGCTTTTTGTTTGTAGTTATTCA
GTTGACATCGTCTGGAAAAAACATAAACGTTTATAATAAGTTTATAATCT
AAAACTACAGTCAAGGAATTCCCTCTATGCAGTACCGTCAACTGCTCTAA
CTTGACAAAACATGGAATGGCAATCGGCCACCATTTCACCGAACCTCCAA
AGTCATTTGATTTGAAATATTTGGGCGTTCTCTAATTCTCCAATCGGCGT
CCGCTCATTTTGAATAAAAACAAAAAAGTTAACAAGAAAAGGGCGCGCTA
TCAGTGAAAGATATCGTGACATGTTATGACAGAAAGTATGATTGATAGAC
TTGGTGGAGTTATCAAAACAAATTCGTCGTCAAAGGGATTTAGTGAAAAT
ACAGGCCAGATATCAACAAGTCCCATGTTTGACCAATCGTCCCAAGTTAG
AGCAGTTGATGGTATATTGTAATTGAGGGAATTCTATAACGAAACTATAA
TTATACAATTAAATATCATTCAAGCACTGCTGTATATAACTTGGTCTAGT
ATCAACATCCCTCACCTAATTCAAGCACCCGTTTTTAGAGCTGAAAATAA
TAGAACGATTGAAACACCGTCCGAGCACATGGCCCTCTATGAACCGCTCT
TTGTTCGGTTTACAATTTTCTTAAGATAGAGTTTTTTCCTAGGGCTCCCC
CTGACTTTGAATTTAAAGTTTGCATCCTTTAGTGAAGTATTCATTTCTTG
GGCTTTCATACACCACTCTTTGATTGTCTTCCTTTCACTTTTCGTAAGAT
CTTCTGTCACCCGGAAGGGCAATCTTTCTCCTTTAGTGATTGCTCTTAAC
ACTGTATTTTTGTCTTCTTCATTTGCAAATCGGACTTTTATTGGTTGATA
GCGTTTTTCATCTTCCTTTTCCTTCAAAAATTTTCCGATTCTTTGAGTTC
CTTCAATCTTTATATTCCTTAAGCGTAGTTTCAAAGGTAAGACTTTTTCA
TTTAGATATTCTTCGTCGTAGATTTTGGTTGACTCCTCTGAATCTTCAGT
GGATTCGTCAACACCATGAAAAATTAGATTGCACGCCGTGGATTGAATCT
GTTGTTCCTCCTGTTTTTCCCTTCGAATTACGTTTTCTATGTTTTTCTCG
ATTTGCCTCGAGGCGACTGCTGCGTAGCTTTGTGATCTAATTTCTCCTTT
CTTCTCAATGATGTCTTCCATCTTCTTTTCGATCGTTGCCATTCTGGTCT
CAAAGCTATCCTTTATTTCGCTGATCTTTGTATTAACGTCTTTGGACTTT
AGTTGAGTGATTTCTACGTCCATAGCATAGTGTCCTCCAGGGTTTGTTCC
CTCCACCAAATTCTTGATTTTTTTAAATCTCCCCCCTCTTTTTTTTCCCC
CTATGACTTTTCAGTTTTTTAGTTTCCCCCTCTTTTTTGCTTTCCCCCCA
GAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCC
CCCCCCCCCCCATATACCCGTATAAATTTCTCAAATTTCAACCTGACACA
GACGTAAAATTTTGCTGCAAAAGGAATACTAGACAAAATAGAACTTTATA
AAGGGGGCGGAGGACACTATGACGTCCTGGGCTTTCATTATATTTTCGCA
AGCTTTTATCTCCTTTCGGAATCCTGAAACTGGTGATGTTTCACATGAAT
TGACCCGTTCCAATAGATCAGGGGTGATCACGACACAGTTTTGACAGACA
AAAGCTCTCGATTCATATGTTAGACATAACTGGATTTGATAGACGGGGAG
GTTTGAACAAATGTAGTGTACGATTCGATTGCACTTTTTTACATTCAAGT
GTGTCTTTGGATCTTCCTTCTTCACTTGTAACACATTCAGATGGGCTGCA
AAGGTCGTAAATTGATGCTGAATTCGGTTGTTTTCGTAGATTTTTCTGAA
TATTCTCCGCCATCTTTACATCTTTTAACAACACATCCATTCAGTTTTTA
TTTGATGTCAGAATGAAAATCCTTTTTTAATAATGAGTGATTCCAACTTT
CAACTTTCATATTATTTCTATCTCTAAAGAAGGGTTTTGATGAGGGACGT
CGATATGAGACCAACTTACAGTACAGACAGGGTAAATTTTGTTTGATATG
TAAGTGAGATTCAGTGAGTTATTATGAGTGGTCCTTTGAGTCGGATTATT
TGAGCAATTTATTGTTGAAAGAAAAAGTAAGTAAACCTCATAAATTTATC
AAAGAATTTTTTTTTTGAGTAAGTTCACCACAATAAGTTTATTTTATTAT
CTCAAGGTATGCTTTCAACTGGATTATTTGCAATGATTACAATCACTGGT
AAATGTTTTGTTTCTGGTATCATTCAAATGTAAGTTGAGTTGTATAATTT
ATCTGAAGGGAACTATTTTGGGTTTTTCCCAAAAAATGGGTGTCAAACTC
AAAAAACTTTCATACCATCATACTGCAAAACAAGCCTAGCAAGCTTTTGT
GGTTAGGTACGTGTCTTGCAATACGTTGCAATACAAGAGTGAATCACAAT
TAAGGTTCAAGTCCTTGCGGCTGCTATCAAAATTCCATCGAAATTCTCCT
GGGAAGATGAGAAAGCCGCGAATCTCAGGTTTGCCTCAAGGAATTTGGCA
ATGAGATGCACAGTAGTCATCTACCCTAATTCTACCATGATGATGTAAGA
TGGTCATCATCATCAATCATGGCTCAATTACATAGTTAGTGGAAGCTACA
ACCTGGACTATAAAAGAATACTAGAAATAATAAAATAAAAAATTTAGTTA
TAAAAGTTAGTTGATTAGTTAGTTATAAAGCTGGTTTGATGGGGGAGGCA
GGCACTCAAGGTAAATGACCTACCGTACCTGTGGCCCTTAAGGGTCCCTT
TTCCAACCTTCTCAAAGTGCACTGTATGGGTCGAAATGAGCAAAAATAAG
GAAAAGTGCACTTTAAGGGTCTAAAATTTGGGAAATCTGACCATATTATG
CCTAAAAATGGTAAAAGCTTTTCAAGAAAATACTCAATAATGATCGACTT
TTTCGCCCAAATTTACTTAAATTTGGTTGATTTAGGAATATATTTCTTGT
TTTTAGTGTATTTGGTTTGCTGGTTCTATGTTTAGAAGCACCAATGCTTT
GTCAATTTTCAGAGATAGCTACAAAACTGAGTGATTGGGTTGAAAGTCAC
TTTCGATTTTGGTTAAGAGCAGCTCTATATTTATTGTAAGTATATTATTT
TTATAACACTTTCTGGAAAAAAAAGCATTTGTCAAATTCTTGATATACGT
AAGTCATTTTTCTAGCGGAAACACCCGAAAAAATCCGGGGTTTGACCCTT
CTTTGTTACTAAAAATAGAAACACAAAGTTCAAAATCCGGCTTTTTTCGA
GTGCCTCCGTTAAAAAATATGACGTCATCTTGACTTACGCATATCAAGAA
TTGGGGTTACTTCATAAGCAAGGGGTAAATTTTGTAGCCTCCAAACAGCA
GAATTTCTGTTCTGAAAGCTAAAGATTATGCTAGCTGGCTAAAATAGAAT
GCAAATAAGTGGTTTGTGATATTCTGACTTGTTGAAAATAAATCAAAAGA
TATTTTTTACCATTTTAGAGCTGGAGTGCCACCAATAGTAATGTGTCTCG
AATTATCCACTTTTATTGGTAGTGGATCATGTGTCGTACTTGCAGCCCTG
TACGGAACACTTGCAATTGGCAGAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031877XLOC_031877Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050350-exon-scaffold_169-1575043694:506569..506734TCONS_00050350-exon-scaffold_169-1575043694:506569..506734Clytia hemisphaericaexon
TCONS_00050350-exon-scaffold_169-1575043694:502700..502828TCONS_00050350-exon-scaffold_169-1575043694:502700..502828Clytia hemisphaericaexon
TCONS_00050350-exon-scaffold_169-1575043694:502205..502316TCONS_00050350-exon-scaffold_169-1575043694:502205..502316Clytia hemisphaericaexon
TCONS_00050350-exon-scaffold_169-1510915933:506569..506734TCONS_00050350-exon-scaffold_169-1510915933:506569..506734Clytia hemisphaericaexon
TCONS_00050350-exon-scaffold_169-1510915933:502700..502828TCONS_00050350-exon-scaffold_169-1510915933:502700..502828Clytia hemisphaericaexon
TCONS_00050350-exon-scaffold_169-1510915933:502205..502316TCONS_00050350-exon-scaffold_169-1510915933:502205..502316Clytia hemisphaericaexon
TCONS_00050350-exon-scaffold_169-1491911889:506569..506734TCONS_00050350-exon-scaffold_169-1491911889:506569..506734Clytia hemisphaericaexon
TCONS_00050350-exon-scaffold_169-1491911889:502700..502828TCONS_00050350-exon-scaffold_169-1491911889:502700..502828Clytia hemisphaericaexon
TCONS_00050350-exon-scaffold_169-1491911889:502205..502316TCONS_00050350-exon-scaffold_169-1491911889:502205..502316Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_169supercontigscaffold_169:502205..506734 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.4618	15.5599	76.6657	105.724	14.3918	11.5187	42.0229	47.5604	61.9267	49.1234	50.2729	42.7865	22.3511	19.5778	15.8255	22.1946	16.7205	28.9672	20.7254	38.2596	28.9971	25.3351	23.3845	31.0119	23.9425	22.2566	42.8353	34.9088	46.6941	47.7215
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050350 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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