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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050374 ID=TCONS_00050374|Name=TCONS_00050374|organism=Clytia hemisphaerica|type=transcript|length=2353bp
GTTAAAGTTTTTCGTTGGAGTGTATGAAATATACAGTTAAAGgtagaata
aaaaaataaatgaagtacaaaaaattgattcataaaacttaaaaacaatA
ATCATCAagtgttataaaaaaaaacggacAAATTTCTATAGAAAGTAAAA
TCACACACAGTTGAATGAAGTGAAATAACAACTTTAGAATATTCTTGTAC
TCAAATTTATCCAATGCGTGAGAGCTAAAAAACTTTCAGTTCCTTTATCG
ATTTTTATGGCATGACTTTCAAAAACCTGATATCGAGCCCCTAAAAAaac
ctgagaaaaaaaatatataatcgtggagattttcttcaacgCCAAAGGGC
TCAATAAATACTACTATAGCTTAGGTAGCTGAATTTCAACTGATGTACTA
TGTGTCTTGGGATATTGAATTAGGGGACTGAATTAAGTATctcattgaaa
aaatcacaaCTTCCTTCGGGtagattttcttcatttttgtttaGTATTAT
CACAATATGCAAGTTTATGAAAAACTGTTCCAAAAAGGTAATAATCGTTG
AAGAAAACAGCAGAACTCACAACATGAACAAAATCTTTCCCTTCGTCATG
AAGGATTTCTTTCACTTTGACATTTCTCCAGTCATAATCTTCAGGTATTT
CAACCTTGATTGCTGAAGCTGAAACAAAGTCCGTTTGATTCATCAAGAGA
GGACCCATTCCAAAGAAATTCTTTTGTGTCCCGGCGTATACGTGACCTTT
TTTATCTACATGTACATTGTCTGGTGCATACCCGACATTGATCTGCGATA
CACGTTTCAGCTGGCCTTCATTTTGTCGTTTATAAACTACGATCGTTGAC
GTCGAGCTAGACGCCGCATAAATAAATTTCTTATCAGGGGACTGAGCAAG
ACCATTTAAAACAGCACCATGAGCTACAATACTACTGTATCCTTTATTGT
ACAATACAATATTTGCAGTGTTTAATGGAAAAATCACTTCAAATGTCGAC
AAATACTTAAATCTCGAGCGAAGACAAAAAAACTTCACAAAGTTGGTGGC
ATAAAATTCATCTTTGTCAATAATTGTTACGTCATTAAGACAGTTAAACA
AATCATTTCGTATGGTTGATACATGGTAAACATCTGTAGGATGTTCAGAT
GAATACTGGAATACTTCAATGGCATCAAAGTCATCCAGGTGGTTGACAAC
ATACAATTTGACCACTCCATTCACTTCAAACACATCCATGCCATGAGGAT
CAAAATTCTCCAAAAACTCTTTAGAAACATTCTTCATTTGCAAACGCTTC
GCACCTTGATCAGGCTTGTTGAAGTCAAACAAATACAGATTTCCTCTCAA
GAAATCTTTGTTGCAATTCGTAGCATCAGCGAACCCATTGGTGATGAATG
CTAAACCATTGCTAGTCACACTGATCTTTTCTGAGCCACATTGTAAATCG
GGCAACACTTTACAATCTCCTGGTCGGTGATTGATGAATCTCACATTAAC
ACCTTTACCGCAAAGCCAAAGATGAAACTGCTTTCCAAAAACAATGTACA
TGATTCCGAATACAAGATCTTTTTTAGTTAATGCCATTTCTATAATCTGC
CAGAATCTGCttgtaataaaatataatcATTTGTTACAAGCGGGTTTTCA
AAAGGTGTATTGTACACCCATTTAGTACTTTCTTATACAGTGTAGTGATG
TCAGGGGAATTTCTTTTGTGATGGAACACCAGAGGAAATCCCACAAAGAA
GCCTATTCATGCACCCCAATAAAAAGATTGACATTGGTAAACTACAAATT
TAGGCCCCATCAGTCCTTAATGAGATAACcagctatttttcattttcaaa
catAGTCATGCAGCTGCTGTCACGGGAAAATTGGGTAGGGTGCTAACAAT
AAAAAACCTACGTTAATGTCAATCGAAACGTCTCTGCTAACATGATTAGG
AAAAAGATCAGAAACCTGATagctgaaaaacttttttatagaAGAGCATG
AATCTGGTAATGTGGCCCACATTTCGATTTATTACTTTTCCTACTTTGAG
GCTTTGGTGAAATCTCTAAATAGGTATATAGTCAtatcaaatcttatttt
ttctggtcaattttgaaatggGCAAGCTTAAACAGTAATTTTTTCTGATA
TAACAGGTACTCAAATTTTTCTATAGGGTAATAATTCATAATATAATAAT
TCATCAACAACATGCTTTTTCAGCTTGGTTCTCACAGCCAGaggatatga
aaaatgaaaaacacagtaagaaccggaaaaaaaagtttttttggcatata
aaatcaaaaatgttgcagacataactttttccgttcacaaagttatgtcc
gca Run BLAST on NCBI transcript from alignment at scaffold_17:72539..76590+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050374 ID=TCONS_00050374|Name=TCONS_00050374|organism=Clytia hemisphaerica|type=transcript|length=4052bp|location=Sequence derived from alignment at scaffold_17:72539..76590+ (Clytia hemisphaerica)
GTTAAAGTTTTTCGTTGGAGTGTATGAAATATACAGTTAAAGgtagaata
aaaaaataaatgaagtacaaaaaattgattcataaaacttaaaaacaatA
ATCATCAagtgttataaaaaaaaacggacAAATTTCTATAGAAAGTAAAA
TCACACACAGTTGAATGAAGTGAAATAACAACTTTAGAATATTCTTGTAC
TCAAATTTATCCAATGCGTGAGAGCTAAAAAACTTTCAGTTCCTTTATCG
ATTTTTATGGCATGACTTTCAAAAACCTGATATCGAGCCCCTAAAAAaac
ctgagaaaaaaaatatataatcgtggagattttcttcaacgCCAAAGGGC
TCAATAAATACTACTATAGCTTAGGTAGCTGAATTTCAACTGATGTACTA
TGTGTCTTGGGATATTGAATTAGGGGACTGAATTAAGTATctcattgaaa
aaatcacaaCTTCCTTCGGGtagattttcttcatttttgtttaGTATTAT
CACAATATGCAAGTTTATGAAAAACTGTTCCAAAAAGGTAATAATCGTTG
AAGAAAACAGCAGAACTCACAACATGAACAAAATCTTTCCCTTCGTCATG
AAGGATTTCTTTCACTTTGACATTTCTCCAGTCATAATCTTCAGGTATTT
CAACCTTGATTGCTGAAGCTGAAACAAAGTCCGTTTGATTCATCAAGAGA
GGACCCATTCCAAAGAAATTCTTTTGTGTCCCGGCGTATACGTGACCTTT
TTTATCTACATGTACATTGTCTGGTGCATACCCGACATTGATCTGCGATA
CACGTTTCAGCTGGCCTTCATTTTGTCGTTTATAAACTACGATCGTTGAC
GTCGAGCTAGACGCCGCATAAATAAATTTCTTATCAGGGGACTGAGCAAG
ACCATTTAAAACAGCACCATGAGCTACAATACTACTGTATCCTTTATTGT
ACAATACAATATTTGCAGTGTTTAATGGAAAAATCACTTCAAATGTCGAC
AAATACTTAAATCTCGAGCGAAGACAAAAAAACTTCACAAAGTTGGTGGC
ATAAAATTCATCTTTGTCAATAATTGTTACGTCATTAAGACAGTTAAACA
AATCATTTCGTATGGTTGATACATGGTAAACATCTGTAGGATGTTCAGAT
GAATACTGGAATACTTCAATGGCATCAAAGTCATCCAGGTGGTTGACAAC
ATACAATTTGACCACTCCATTCACTTCAAACACATCCATGCCATGAGGAT
CAAAATTCTCCAAAAACTCTTTAGAAACATTCTTCATTTGCAAACGCTTC
GCACCTTGATCAGGCTTGTTGAAGTCAAACAAATACAGGTTTCCTCTCAA
GAAATCTTTGTTACAATTCGTAGAGGATGGACCGTTTGTCATAAATGCTA
AACCATTGCTAGTCACACTGACTTTTTCCGATCCACATTGTATATTGGGG
ACAACTTTACAGTTTCCAGGTCGGTGATTGATGTGGCGGGTAGCAACGCC
ATGACTGCATAACCAAAGGTGGATTTGCTTTGCCAAAATGAAATACAGAA
TACCAAACACAAGATGTTTCTTATTTAATGTCATCTTGGCGAGTAATCTT
CAACCTTTTactctttaaaaagattaattttgATGTCGAATCGTTAATGG
ACCAGATTGCTATGTTGTTTGAAAAACTCTAGAAAAAAAATAGCGGNATC
GAATCGTTAATGGGCCAGAGATTGCTATGTTGTTTGAATAActctagaaa
aaaaaaagtggacaaaattttacgaaatgggtttcttgaaaaacaaatag
aaaaaatgtcgattttttgctcaatacatattttcaaacaaagagTTCGG
TAGAATTACAGTGCAGTGTTTTAGCTCTAAACTAAGTtgcaataaaaaga
aaattcaccAGACAGGTGAGTTTAAGTAATtataatttcatatttttctc
tcaaaaagtAAAACAACTCAGAGTCAAAATGTAAAATGctaaatataaaa
taataagaaacaaatttcataaagattaTGGAGCTAAGCCTTTTTTGCTG
TTAGTTGCAGTATGCAATAATTTTGAACTCCAGACTTTGCAATAAGCAAG
TTTATGAAAAACTGTTCCGAGCAAGTATTGGTCATTGAAGAAAACAGCAG
AACTCACGACATGAACAAAATCTTTCCCGTCGTCATGAAGGATTTCTTTC
ACTTTGACATTTCTCCAGTCATAATCTCCAGGTATTTCAACCTTAACTGC
TGAAGCTGAGACAAAGTCCGTTTGATTTTTAGTAAGCTGTGCAAATCCAA
ACATATCTTTCCCTATTCCAACATACAAATGACCTTCTCTGTCGATGTGA
ATGTTATCGGGGAAATACCCTACCTCAATCTGTTTAACACGTTTCAACTG
GCCAATATTGTAACGCTCGAACACAGATATACTTGAAGTGGATGTTGATG
CagaataaagaaattttttatcaGGAGAAAGTGCTATTCCGTTGAATAAG
GAACCGTGAGCAGCAATAGCAGTGAAGccttttttgtaaaatacaATGTT
TGCCGTATTCATACCGAAAGCAAGCTCAAAGAAAGTTAAGAAATGGTATT
TGGATCGGGAACAGAACTTGATGAAGTTGGTGGTATAAAATTCATCTTCA
TCAATAATCGTTACGTCATTAAGACAGTTAAACAAATCATTTCGTATGGT
TGATACATGGTAAACATCTGTAGGGTGTTCAGATGAATATTGGAATACTT
CAATGGCATCAAAGTCATCCAGGTGATTGACAACATACAATTTGACCACT
CCATTCACTTCAAACACATCCATGCCATGAGGATCGAAATTCTCCAAAAA
CTCTTTAGAAACATTCTTCATTTGCAAACGCTTCGCACCTTGATCAGGCT
TGTTGAAGTCAAACAAGTACAGGTTTCCTCTCAAGAAATCTTTGTTACAA
TTCGTAGAGGATGGACCGTTTGTCATAAATGCTAAACCATTGCTAGTCAC
ACTNATGATGAGGCTTGTTGAAGTCAAACAAATACAGATTTCCTCTCAAG
AAATCTTTGTTGCAATTCGTAGCATCAGCGAACCCATTGGTGATGAATGC
TAAACCATTGCTAGTCACACTGATCTTTTCTGAGCCACATTGTAAATCGG
GCAACACTTTACAATCTCCTGGTCGGTGATTGATGAATCTCACATTAACA
CCTTTACCGCAAAGCCAAAGATGAAACTGCTTTCCAAAAACAATGTACAT
GATTCCGAATACAAGATCTTTTTTAGTTAATGCCATTTCTATAATCTGCC
AGAATCTGCttgtaataaaatataatcATTTGTTACAAGCGGGTTTTCAA
AAGGTGTATTGTACACCCATTTAGTACTTTCTTATACAGTGTAGTGATGT
CAGGGGAATTTCTTTTGTGATGGAACACCAGAGGAAATCCCACAAAGAAG
CCTATTCATGCACCCCAATAAAAAGATTGACATTGGTAAACTACAAATTT
AGGCCCCATCAGTCCTTAATGAGATAACcagctatttttcattttcaaac
atAGTCATGCAGCTGCTGTCACGGGAAAATTGGGTAGGGTGCTAACAATA
AAAAACCTACGTTAATGTCAATCGAAACGTCTCTGCTAACATGATTAGGA
AAAAGATCAGAAACCTGATagctgaaaaacttttttatagaAGAGCATGA
ATCTGGTAATGTGGCCCACATTTCGATTTATTACTTTTCCTACTTTGAGG
CTTTGGTGAAATCTCTAAATAGGTATATAGTCAtatcaaatcttattttt
tctggtcaattttgaaatggGCAAGCTTAAACAGTAATTTTTTCTGATAT
AACAGGTACTCAAATTTTTCTATAGGGTAATAATTCATAATATAATAATT
CATCAACAACATGCTTTTTCAGCTTGGTTCTCACAGCCAGaggatatgaa
aaatgaaaaacacagtaagaaccggaaaaaaaagtttttttggcatataa
aatcaaaaatgttgcagacataactttttccgttcacaaagttatgtccg
ca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050374-exon-scaffold_17-1491911889:72539..73851 | TCONS_00050374-exon-scaffold_17-1491911889:72539..73851 | Clytia hemisphaerica | exon |
| TCONS_00050374-exon-scaffold_17-1510915933:72539..73851 | TCONS_00050374-exon-scaffold_17-1510915933:72539..73851 | Clytia hemisphaerica | exon |
| TCONS_00050374-exon-scaffold_17-1575043694:72539..73851 | TCONS_00050374-exon-scaffold_17-1575043694:72539..73851 | Clytia hemisphaerica | exon |
| TCONS_00050374-exon-scaffold_17-1491911889:75551..76590 | TCONS_00050374-exon-scaffold_17-1491911889:75551..76590 | Clytia hemisphaerica | exon |
| TCONS_00050374-exon-scaffold_17-1510915933:75551..76590 | TCONS_00050374-exon-scaffold_17-1510915933:75551..76590 | Clytia hemisphaerica | exon |
| TCONS_00050374-exon-scaffold_17-1575043694:75551..76590 | TCONS_00050374-exon-scaffold_17-1575043694:75551..76590 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:72539..76590 + |
Blast
BLAST of TCONS_00050374 vs. Swiss-Prot (Human)
Match: PON3 (Serum paraoxonase/lactonase 3 OS=Homo sapiens GN=PON3 PE=1 SV=3) HSP 1 Score: 125.946 bits (315), Expect = 6.082e-31 Identity = 95/332 (28.61%), Postives = 165/332 (49.70%), Query Frame = -2
Query: 499 RPGDCKVLPDLQCGSEKISVTSNGLAFITNG--FADATNCNKDFLRGNLYLFDFNKPDQGAKRLQMKN-VSKEFLENFDPHGMDVF-EVNGVVKLYVVNHLDDFDAIEVFQYSSEHPTDVYHVSTIRNDLFNCLNDVTIIDKDEFYATNFVKFFCLRSRFKYLSTFEVIFPLNTANIVLYNKGYSSIVAHG-AVLNGLAQSPDKKFIYAASSSTSTIVVYKRQNEGQLKRVSQINVGYAPDNVHVDKK-GHVYAGTQKNFFGMGPLLMNQTDFVSASAIKVEIPEDYDWRNVKVKEILHDEGKDFVHVVSSAVFFNDYYLFGTVFHKLAYCD 1476
P +C ++ +L+ GSE I + +GLAFI++G + N D G ++L D N+ + A+ L++ KE F+PHG+ +F + + V LYVVNH +E+F++ + + VY + TI+++L +ND+ ++ ++FYAT F LS FE+I L ++ Y+ +VA G NG+ S D+K++Y A + I + ++ + L ++ I +G DN+ VD G + AG N M L N D + +++ ++ +V + + G + S A ++ L GTVFHK YC+
Sbjct: 38 EPENCHLIEELESGSEDIDILPSGLAFISSGLKYPGMPNFAPDE-PGKIFLMDLNEQNPRAQALEISGGFDKEL---FNPHGISIFIDKDNTVYLYVVNHPHMKSTVEIFKFEEQQRSLVY-LKTIKHELLKSVNDIVVLGPEQFYATRDHYF-----TNSLLSFFEMILDLRWTYVLFYSPREVKVVAKGFCSANGITVSADQKYVYVADVAAKNIHIMEKHDNWDLTQLKVIQLGTLVDNLTVDPATGDILAGCHPN--PMKLLNYNPEDPPGSEVLRI---QNVLSEKPRVSTVYANNGS-VLQGTSVASVYHGKILIGTVFHKTLYCE 353
The following BLAST results are available for this feature:
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