TCONS_00050376 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050376
Unique NameTCONS_00050376
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1185

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050376 ID=TCONS_00050376|Name=TCONS_00050376|organism=Clytia hemisphaerica|type=transcript|length=1185bp
tattgctgattttaaagtaaatttgacaaaaagttatgtcctcAACCAAC
AAGtaGGTAGAATGCATCGTGCTTACCAATCGATAACTCCTGCCAACAAT
AAACTTTTAAAGCAGAGATGGGATATGACAAGATATGATACACATCGGAA
AAAGGTTCGTCAGGCAAGCGCAGTGATCGATAACCATGCCCCCTGTACAT
ATTTGCATCTACActtgaaacttaaaaaaatgCAGATTGAGGGAGAAAAC
TTAGCAACTGTGGAAAGAGACAATCGAATTTTATTGGAGAAAATGTCACA
TATCATGAGAACCAAAGGGCGTGTAGATAATCGCAACTACTACGAACACA
AAAGTTTGAATAAAACCAAACGTCAGCGTGAACTTCTTCGAGTAACACAC
GAAAATCAGGCTATATTGAAAAGAATAACATCGAAAGAACCACATTTGAA
CCATTTACATTGGGAGGAAGAATGGAAAGCTAACCAACGATACATGGATA
ATATCGCAAAATATCCCAAGGATTGGTATGAAGCTATCNCTATCCAACGC
TATccaacgagcttctaactccttctagatccggagatataagcctttaa
agttcgaactagcgattttttttaaacttaaaaaaatgaccgtggcactt
aaagggttaagaaatattctttatTCTCTAAAAGATGATAAGCGTTCACA
ACAATCGTCGTGTCTATACTGTAATGTAAGTATAGATAAGTTTCAATCAT
CGCTGCTCTCGCTCACCAATTGACTAAGTTCTGCAGCACTGTACCCCAAC
AACATCTTCAGATCACAAACAAACTGATAAACGAAGCGCTTACCACACAC
TTTGTGTATCAAGTCGCCATCGTAGTAATACCTCAAGGCTCGACTCAATT
TTTCGTAGTTCATGGAGGGTTTGTTTTTGCGTTCACCCCATAACTGAGCA
ACTCGTTCAGGGTCAACCAATTTGAAAGCACCTTCTTCGCCCACCCACAT
AATTATGTCTTTCATGTTTTTCTCTGTTAACAGCTCCAATAAGAATTGCC
ACAGTTGTATTTGCCCACTGCCCGGTGATGCTAAAAATGATAGATGAAAG
TTTCATAGTAGGTGCTCCACAGAGTgcagtttttattgaaaaaagtttct
catAACAAAACATTATTCGGTTGTATGGAAAACTT
Run BLAST on NCBI

protein sequence of TCONS_00050376-protein

>TCONS_00050376-protein ID=TCONS_00050376-protein|Name=TCONS_00050376-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
IADFKVNLTKSYVLNQQVGRMHRAYQSITPANNKLLKQRWDMTRYDTHRK
KVRQASAVIDNHAPCTYLHLHLKLKKMQIEGENLATVERDNRILLEKMSH
IMRTKGRVDNRNYYEHKSLNKTKRQRELLRVTHENQAILKRITSKEPHLN
HLHWEEEWKANQRYMDNIAKYPKDWYEAIXIQRYPTSF
Run BLAST on NCBI

transcript from alignment at scaffold_17:78175..88756+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050376 ID=TCONS_00050376|Name=TCONS_00050376|organism=Clytia hemisphaerica|type=transcript|length=10582bp|location=Sequence derived from alignment at scaffold_17:78175..88756+ (Clytia hemisphaerica)
tattgctgattttaaagtaaatttgacaaaaagttatgtcctcAACCAAC
AAGGTATGAAACcttgttttctaattttttattgatcaactgaaatatag
aaaacttttggttttttttgaaagcttataatgagtccttcaaatctaga
atgaaGTTACCTGATCATagccagttttcttttcatgaagtcaaacttta
tggGAATATTTTTNAGCTTAATATATTAGCCATGGACTGAAATCTAAGAC
AGGTATTAGATTAGCATATTTCATCTTAAATGAAGTGTAAACAacaaaga
gttttttgccaaatttgtctgATTATAACTACTCTAGGTCAAATTTCTGG
ACCAAGCCAGTTTGATTAAGCCCTGATattatgttttctgaaaattgaag
tcattaataaaaagattatccaggactaaaagtgaaattcaaaaatttat
tttttcaaaattctttcacCTATTTGGGTGACATTACCAGATTCATGCTC
AGCAAACACTTTAATGGTACGAGAgggaaaatatgaaaattcaaattcat
caaaatttaaaccTAAAGTCTGTCTTAAAAGTATGACATTATGACTCTAA
TTTGTCCAGTGGACAATAGaagacaaatgaaaaaaacatttttcttctaA
TTCCTCAGGAACCCTGCAAATACTAATACTTTGAATATCAGAGgacaaga
tttcaaaaaaaataaaccagccgaggctggaaggtcagccaaaagAGCTA
AGAGGGTTGGAAGGGTCAAAGGGGTGAAAGGGATCATTTTGATGAGATGT
GAGCAAATGTTAGATCAGCGTTCGATACAATGGCAATTAGCTGCCGGTTG
AAAAGTCCAGGAACTTCGCTCGTTTGGGATGTTAGTTAGTCTACATAGTG
TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NgtaactttctgcagtccgctttctgcaagtccgATAAAAGATATGTAAA
AACTGTtgtcgccattcattccatatcAACCATTTAGTTAAAGCCAAAAA
CGTGTGCAAAGATCAGAAAAATCTGCTGTTCcaaactgcgtgaaaaataa
tttgatcaatttcaacaaaaactgtatatatatatatcaataattgatca
aattccaaagaccatttgtcataattttgaaagtccaataataggagatg
tgatcgtcatcatttggttcccgtcatctgaccgaccctgatttacagtc
agcaggtagagccagatatcaacaagtcccatgttgcgtactcgtcccaa
gttggagcagttgatggtactAGACAGTCCGGTGTAGTCCGGTGtgcact
tttgaaaatttaatgaagaaaaCACAAGACAAAAAATAACGCCGGAATGT
CCGGTGTATCAGCAGGGTCGTCTGAAgccaaacacgtccaagtccaaaaa
aaaaacgattgcatccagtctttatcaaatttagacagtagctgtatgTA
CTTTTGtatactttatcaaattccaataacattatacaGACCTGCCAACT
TGAGATGTGCATTTtgcgtgagataaaaatttcaaaggaaaatccGAAAT
CTTAGTCCGATTTTTCCGATTTCGGAAaccggaaatttttttccaaaaga
tcgaaaatctgggaaaatttttccaaaaatccgAAATCTTAGTCCGATTT
TTCCGATTTCGGAAaccggaaatttttttccaaaagatcgaaaatctggg
aaaatttttccaaaaatcagaaatctgggaaaaaaatttctgaaaatcag
aaaattgttttccgaaaatcggaacATTGgggaaacttttttaaaaaaat
cggaaaaacaaggaaatttattttaaatgtcaaaaatgcatgagaaatca
aacttttgaaaaagtgcGTGAGACAGTGTTGGAATGCGTGAGTCTCACGT
CCAATGCGNTTTGAAAAAGTGCGCGAGACAGTGTTGGAATGCGTGAGTCT
CAGgtccaatgcgtgagagttggcacctctgattataacaccatcaattc
cccctctagaggcaaacaagaaaaatatgtttttatttcaaaaactactg
taataaaaagcaaaaataaaaagtatcagaaaattcaacataaacaaaaa
cttgNccaggaatacaaaagaaggaatGAAAGTATGTGATTACTAAAACC
Tttaaatgcataattagaataattaacataatatatgcatggatcgtgca
tcgcgcatcgtgaatcgttggatcgcgcatcgtaaattacacaaaccgtt
cataagatgtagaaaaagaatccccttgatgaaaatcatgtgtttgattt
gccaagttaaaaaaataaatgacagatattgaagcttgcaacagattcaC
CCTGGAAATACTTTGAAACAACACTTTATaaacttatcgcttgagccgcc
atcttgaaacaccacattatgatctgtaaaaacaacacacgctaaaagta
cccaaaaagttaagtaagtaagtaagtatttatttaccatttaacactac
aaaaaagatacaagtgatgatatgcacaaaaaatatatggagggagaccg
ccttatagtctagccccgggggggtacttaggcaaatggagggtacggta
tgtgccgcccttaagggtagtttttggatttccaaagtcccgctaagggt
cggaaaaatcagaaaatcaaatttcagtcccactaagggtcggaaaaata
ggaaaattttaactttttaccNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNcccgctaagggtcggaaaattcccaaaattttcctttg
ttttctcctttttagtcccggtaagggtccaaagttcaaaagtcgggcgg
cacccccccgtcagctcgcaaccctagtacccccccgggagtctagctaa
tcaaaaagatgcggccacctaagtACAGATTGCGTTTATAACACTTTGta
aattatttataaatatttatatttttaagaatttttttNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTGGCGTCTTATGG
AAgaactggaaaattttacctatttgaatgcccagcttaggctgaccaat
caGGATCAAGATTTCTAATTGGAAGACACTACATTGCAAAACTTGGAAAA
TCTAATTTCGAAGAAGGGAAAGAGATATTCGTATGatatgattttatttt
caaatgtttctaaTCCTTTCGTGGAGTCAGGGTGTTTCAgaattaataaa
aaaagaacaattacattattttagttttcttttcaaaatcgatttttctt
tgttttggaaAGTAATTTCTAAAGTCACAAAGTTGTGTTGTTAGCACTCA
TTGGACTGACGGGTGAAGATAATATGAATTGAGCTGTCTAAGGCTAAGCC
AATTCACTAGTCACGTCTACGAAAATTCAATGTAGAGATAAATTATCGCA
AAATATAGTTGGTTAAGATTATATATTGTTTTTCGAGTCACTGTGTAATA
TTTTTCCTGccaatttttgaagtcaaaaactaattttgtCCTACAAAGGG
TCTATTTAGAACACACTTTTACTAACCTCTGCATAGGTTATCCATTATTC
CAATGCTGAAGTTCTTAGTAGAGGCATTTAAACtcataaaaactttgatt
aAAGATTTGTTTATGAATCCCCAAATCCCCAGCCCCCACCATTGAAAACC
TTGGTTTGGCAAAAAAACCTGATCTCAAGACAATGAGCCCTTCACAATTG
TTTAAACATCCTAAGACCGTGAATATAAAGAAATAGCCTGAAGCCGCCCG
GATCCACAAAGGCCACACACAACGATCACAAAATCACTTCTACACTTGCA
GATTGAGGCGTTCACCTCGTGTTCTTACAAGGAATACAGCTGCGACTGCT
TTTAGGTgcttaatatttgtttttaagtataGGCTACACAAAGACATTTT
TGCCACTCGCTTATTTAATATTTCGTTTCTGTGCGCGAAGTggattttgt
ttataaaaaaagagcCGATTTTTTTGACTCAAAATGAAACATCTTTTCTC
AAATATATAGAGTCGGTTGGAGGACAAGAACCAAACCATCAATTAGGCTT
Ggcctaaagtctgtctcaaaataatttgcagctggagaaaaaaatagctg
taacttttgatagaattcgaatgaattgcgattttgtgctcctTAAAAAG
ATaatcgtgagtggaatattatgaagtaaaaaattttagaaaaaaaagga
aaatgaaaatgaaaaatgaagaagaaaaaaatcgatttcttgtagaaatg
tggtataattaccattttcacaggagtgattcatcaatcttagatcatta
tcactctcaaaaaatttttcaaaaatattcattcaatcaaaagatatcaa
acaaagtttattgctggttgactctataaacactatactataaagtagta
aaaaacgacaaaaaaaacagccttttgtcgatcaaccagcaataaacttt
gtttgatatcttttgattgaatgaatatttaaattgaaaaatcttttcac
actgatgatgatctaagattgaagagtcacaccaggacaaagtttttgca
agcgaggcgagggaagatatgacagtcagggaaatccctcaattgcggta
tactgcaattgcggtagttttcattcgtgcctacaaaggcttataacagc
tacatatagtgctggtcaacaaacatcgactgtaaaaaatcgtacgagaa
gatagcttttctttattaaaagaatctgatctacggaaaaaatattttgt
ctgtgcgttCAAAAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATGaccaa
ttatgtacaaaaattgcctgttttctccttgaatcttgaattctgtttct
tgaatatactgcaattgcggtatatgaaaaattcaaaagtgaagTTTATC
CCGCAATTGCAGTAAGaaattactaccgcaattgagggatttccctgact
gtatgaggatttaatatcatcgaactaatcgaactttttactgaccgaac
tgatcgaactgctattgcttaaaaaattgtgagtgttcgatataggttcg
attaatttttttaattgaattttaatCGTTTGACTGGGTTCGCTTAGTTT
GaattgtttgattggttcgacaagttcgattgatcggatCTCTGGCATGT
tatatgacagaaagtatgattgataaacttggtggagttatcaaaacaaa
tttgttgtcaaagagatttaaagtaagtgaaaatacaggtcAGATATACA
ACAAGTCCCATGGTCAAGTTATTCAAAGCCTTTCAAAGCCTGTCGCACGC
GTTCGTTCGCCAAAACGACAATTGCTATTGGGTTGCAAAATCTCACAGAC
TCTAGACTAGACACAAAATAGCAAAGCAGAAGATTATGAATACAATAAGA
ACAGATCATACTCACTTATACTTTAAGGTGAATAGTAGAAATGTGTCAAT
CACGAGGTTCAACTTATATACCTGCTtgaccttttttgaaatttgagtaG
GCTCCATCCAGCtaaactttcactttcgttttcggaagTTACTAGACTGC
GCTTCTTTTGTAGCGCCTGCTCCACGATAGAGGCTAAATCTAACGTCACC
ATAGTAACGTTTGATAATGGCagagaacaaaaacaaaaaaagtcgGCCAT
TTGTTCTTCTCAAATTACAGCGCGAGGACATATCTCGAGTGCGCAGGGGC
CTTTTTGggtttttctaacttttatgggattttaatttcttttgtaaaag
taGGTAGAATGCATCGTGCTTACCAATCGATAACTCCTGCCAACAATAAA
CTTTTAAAGCAGAGATGGGATATGACAAGATATGATACACATCGGAAAAA
GGTAAGACGTTGGCATgtgttttcttttcaacttttgatatttctttAAG
CATCACCAGTGCTTAAAAATGTAAAACGCAATAGGTTTTCTGCTGAAGTT
TATTAATCGTTATTTTTGTTGCTCCGTAACGCTTCAGAGGGCTagaattt
tcgcgaaaaagacTAAAATTTTCGAATACCTTATTAACTTCAGCGAATAA
AATAATGGTTAATTGCTTTCTTCATTTTCAGGTTCGTCAGGCAAGCGCAG
TGATCGATAACCATGCCCCCTGTACATATTTGCATCTACActtgaaactt
aaaaaaatgCAGGTAACTTACGTTTAAACCTTTATCATAATTTAGATGAG
CAGTACTCCGTTTGGATTATTACAGTATGTTTTATAGACTGGACTTTTTT
GGAAATCATCTTTATACTCTTATGGAGGGGCCTTAGTATAGTTATTGATA
CTGTGTATATGCAACAAATTGCCGTTCGAATTCTAGATTGAGGGAGAAAA
CTTAGCAACTGTGGAAAGAGACAATCGAATTTTATTGGAGAAAATGTCAC
ATATCATGAGAACCAAAGGGCGTGTAGATAATCGCAACTACTACGAACAC
AAAAGTTTGAATAAAACCAAACGTCAGCGTGAACTTCTTCGAGTAACACA
CGAAAATCAGGTAGCGTTAGAAGCCTTTTATCTTCAAAAGTCTAACTAgc
tgttgtttttctctttttgattAACAGGATTAACTGATTTTTTTGAGTAA
AATTATTATCACTAATGTTACAATTTATACGAAGGgccattttcttttga
aaatgaacagaatttttttaaaaacgttttgaaTGAAACATTTTCTCCTT
TTCTGTTACAGGCTATATTGAAAAGAATAACATCGAAAGAACCACATTTG
AACCATTTACATTGGGTAAGTAACTGTTATCGTCTAAAAAGTAATGAGGA
TCAACTAACGCGTCTCGATTATTTCGAAATGCATGTAAGAGATATGTGAT
GATTGGATAAAATTTTAAATGGATTTCTCACGTCTCGCGTTTCATTTATT
TTGGTTTATGTGAAATAGATGCTCACAAACAGAACAAGATTTGAGCGTCT
GTTACATTCatcaattcaaaaataattaattttctttctcCCGATGGAAC
TGATCCAATTAGATTAGATTGTCGAGGACATGCTTATTTAAATAGGCTGC
CCTTAAATTGCCCtgtgattgaaaaaaaactcaCAATGAAATTACAGCTG
ATCTCCGTAATTTAAAATGATTCCTGATTTTAACTCTGTTGGGGCAGAGA
CAATGAACGGAAATATTTTCGCGATTCGCGGAAATTTAGTTACCGTGAAG
TTGTATATACACTCAAGGTACCTTTAAAAGTTTTCTCATGAAAAAGGCTG
CTACTTTAGGCgtggtcgaaaaatcgcgaatttgaggaaaaaatgttttt
cgcgagcataaactttcgcgaatcgttggataaaaataagaatttgtATG
AAAATTTCCTTAAAAGTGAATATTATTCGATAAGTCCGATAAAAACGGTT
GCTCCTCAATTTCAAAAAGGCATTAAATATGCCGAAAATTTAATATTAAT
TACGATATTTATTATTGATTTCCaactttttgagaatttttcacGATAAA
CTTTCGTGGAttgccctgttaagaattttcaaagacatttactttcgcga
aaaaggtcaaaattcgcgaaaatcgcgaaagttggtacgcctaaagtaag
cctcaaataaaaatagattttggaAATTGTTGGATTTTctggataaaaaa
aattcaagttttaTGAATTTAGGAGGAAGAATGGAAAGCTAACCAACGAT
ACATGGATAATATCGCAAAATATCCCAAGGATTGGTATGAAGCTATCGTT
CGAAAGACCAAACCCAAGAAGAAGAGCACCTCAATGCAAGACAAAGATGA
TAAATCAGATGAAGAGAATGACAACAATGAACATCTACCCTCTATCAACA
ATTAAAGCCACTTTTTTCTTAACAAATGaacaattcttttttctaatatt
ttgataaattttgttatctttttgtttttaatgaagtaattttatattaa
tattttatttaacaaaataaatagATTTAGTTATATGTAAATTGTTTTGA
CTATACAATAAATGAAAATGGTTTGactaaaaatctataaaaatttAATA
TAAAATTGAGTATAAAATGGTATGAAAATaagtatataaaaataaagatg
ttgaaatcaaccctttgagtgccaatgtcgtatatatcagacatgggcta
tgtaggagggcgaagcccaaAACATTATTCGGTTGTATGGAAAACTTCTT
TCGAACCCGCGGACGGGGAGcgtggagtaaggtttataacgCACTCTTAA
CTGAGAAGACAAGTAGttagagacattcgagttatagaggttggAGTTAA
AGTAAAGTTTCCACTATATATTAGCTCGTGGCCAGAGCCGAGTTAACTCT
CTATAAAATTTCGATGGGTAAATATAAGCACTTCTACAATCAATCAATGA
ATAACGGTCGCAANTCGATAAGTCCGATAAAAACGGTTGCTCCTCAATTT
CAAAAAGGCATTAAATATGCCGAAAATTTAATATTAATTACGATATTTAT
TATTGATTTCCaactttttgagaatttttcacGATAAACTTTCGTGGAtt
gccctgttaagaattttcaaagacatttactttcgcgaaaaaggtcaaaa
ttcgcgaaaatcgcgaaagttggtacgcctaaagtaagcctcaaataaaa
atagattttggaAATTGTTGGATTTTctggataaaaaaaattcaagtttt
aTGAATTTAGGAGGAAGAATGGAAAGCTAACCAACGATACATGGATAATA
TCGCAAAATATCCCAAGGATTGGTATGAAGCTATCNCTATCCAACGCTAT
ccaacgagcttctaactccttctagatccggagatataagcctttaaagt
tcgaactagcgattttttttaaacttaaaaaaatgaccgtggcacttaaa
gggttaagaaatattctttatTCTCTAAAAGATGATAAGCGTTCACAACA
ATCGTCGTGTCTATACTGTAATGTAAGTATAGATAAGTTTCAATCATCGC
TGCTCTCGCTCACCAATTGACTAAGTTCTGCAGCACTGTACCCCAACAAC
ATCTTCAGATCACAAACAAACTGATAAACGAAGCGCTTACCACACACTTT
GTGTATCAAGTCGCCATCGTAGTAATACCTCAAGGCTCGACTCAATTTTT
CGTAGTTCATGGAGGGTTTGTTTTTGCGTTCACCCCATAACTGAGCAACT
CGTTCAGGGTCAACCAATTTGAAAGCACCTTCTTCGCCCACCCACATAAT
TATGTCTTTCATGTTTTTCTCTGTTAACAGCTCCAATAAGAATTGCCACA
GTTGTATTTGCCCACTGCCCGGTGATGCTAAAAATGATAGATGAAAGTTT
CATAGTAGGTGCTCCACAGAGTgcagtttttattgaaaaaagtttctcat
AACAAAACATTATTCGGTTGTATGGAAAACTT

Coding sequence (CDS) from alignment at scaffold_17:78175..88756+

>TCONS_00050376 ID=TCONS_00050376|Name=TCONS_00050376|organism=Clytia hemisphaerica|type=CDS|length=3402bp|location=Sequence derived from alignment at scaffold_17:78175..88756+ (Clytia hemisphaerica)
attgctgattttaaagtaaatttgacaaaaagttatgtcctcAACCAACA
AGtaGGTAGAATGCATCGTGCTTACCAATCGATAACTCCTGCCAACAATA
AACTTTTAAAGCAGAGATGGGATATGACAAGATATGATACACATCGGAAA
AAGGTTCGTCAGGCAAGCGCAGTGATCGATAACCATGCCCCCTGTACATA
TTTGCATCTACActtgaaacttaaaaaaatgCAGATTGAGGGAGAAAACT
TAGCAACTGTGGAAAGAGACAATCGAATTTTATTGGAGAAAATGTCACAT
ATCATGAGAACCAAAGGGCGTGTAGATAATCGCAACTACTACGAACACAA
AAGTTTGAATAAAACCAAACGTCAGCGTGAACTTCTTCGAGTAACACACG
AAAATCAGGCTATATTGAAAAGAATAACATCGAAAGAACCACATTTGAAC
CATTTACATTGGGAGGAAGAATGGAAAGCTAACCAACGATACATGGATAA
TATCGCAAAATATCCCAAGGATTGGTATGAAGCTATCNCTATCCAACGCT
ATccaacgagcttctaaattgctgattttaaagtaaatttgacaaaaagt
tatgtcctcAACCAACAAGtaGGTAGAATGCATCGTGCTTACCAATCGAT
AACTCCTGCCAACAATAAACTTTTAAAGCAGAGATGGGATATGACAAGAT
ATGATACACATCGGAAAAAGGTTCGTCAGGCAAGCGCAGTGATCGATAAC
CATGCCCCCTGTACATATTTGCATCTACActtgaaacttaaaaaaatgCA
GATTGAGGGAGAAAACTTAGCAACTGTGGAAAGAGACAATCGAATTTTAT
TGGAGAAAATGTCACATATCATGAGAACCAAAGGGCGTGTAGATAATCGC
AACTACTACGAACACAAAAGTTTGAATAAAACCAAACGTCAGCGTGAACT
TCTTCGAGTAACACACGAAAATCAGGCTATATTGAAAAGAATAACATCGA
AAGAACCACATTTGAACCATTTACATTGGGAGGAAGAATGGAAAGCTAAC
CAACGATACATGGATAATATCGCAAAATATCCCAAGGATTGGTATGAAGC
TATCNCTATCCAACGCTATccaacgagcttctaaattgctgattttaaag
taaatttgacaaaaagttatgtcctcAACCAACAAGtaGGTAGAATGCAT
CGTGCTTACCAATCGATAACTCCTGCCAACAATAAACTTTTAAAGCAGAG
ATGGGATATGACAAGATATGATACACATCGGAAAAAGGTTCGTCAGGCAA
GCGCAGTGATCGATAACCATGCCCCCTGTACATATTTGCATCTACActtg
aaacttaaaaaaatgCAGATTGAGGGAGAAAACTTAGCAACTGTGGAAAG
AGACAATCGAATTTTATTGGAGAAAATGTCACATATCATGAGAACCAAAG
GGCGTGTAGATAATCGCAACTACTACGAACACAAAAGTTTGAATAAAACC
AAACGTCAGCGTGAACTTCTTCGAGTAACACACGAAAATCAGGCTATATT
GAAAAGAATAACATCGAAAGAACCACATTTGAACCATTTACATTGGGAGG
AAGAATGGAAAGCTAACCAACGATACATGGATAATATCGCAAAATATCCC
AAGGATTGGTATGAAGCTATCNCTATCCAACGCTATccaacgagcttcta
aattgctgattttaaagtaaatttgacaaaaagttatgtcctcAACCAAC
AAGtaGGTAGAATGCATCGTGCTTACCAATCGATAACTCCTGCCAACAAT
AAACTTTTAAAGCAGAGATGGGATATGACAAGATATGATACACATCGGAA
AAAGGTTCGTCAGGCAAGCGCAGTGATCGATAACCATGCCCCCTGTACAT
ATTTGCATCTACActtgaaacttaaaaaaatgCAGATTGAGGGAGAAAAC
TTAGCAACTGTGGAAAGAGACAATCGAATTTTATTGGAGAAAATGTCACA
TATCATGAGAACCAAAGGGCGTGTAGATAATCGCAACTACTACGAACACA
AAAGTTTGAATAAAACCAAACGTCAGCGTGAACTTCTTCGAGTAACACAC
GAAAATCAGGCTATATTGAAAAGAATAACATCGAAAGAACCACATTTGAA
CCATTTACATTGGGAGGAAGAATGGAAAGCTAACCAACGATACATGGATA
ATATCGCAAAATATCCCAAGGATTGGTATGAAGCTATCNCTATCCAACGC
TATccaacgagcttctaaattgctgattttaaagtaaatttgacaaaaag
ttatgtcctcAACCAACAAGtaGGTAGAATGCATCGTGCTTACCAATCGA
TAACTCCTGCCAACAATAAACTTTTAAAGCAGAGATGGGATATGACAAGA
TATGATACACATCGGAAAAAGGTTCGTCAGGCAAGCGCAGTGATCGATAA
CCATGCCCCCTGTACATATTTGCATCTACActtgaaacttaaaaaaatgC
AGATTGAGGGAGAAAACTTAGCAACTGTGGAAAGAGACAATCGAATTTTA
TTGGAGAAAATGTCACATATCATGAGAACCAAAGGGCGTGTAGATAATCG
CAACTACTACGAACACAAAAGTTTGAATAAAACCAAACGTCAGCGTGAAC
TTCTTCGAGTAACACACGAAAATCAGGCTATATTGAAAAGAATAACATCG
AAAGAACCACATTTGAACCATTTACATTGGGAGGAAGAATGGAAAGCTAA
CCAACGATACATGGATAATATCGCAAAATATCCCAAGGATTGGTATGAAG
CTATCNCTATCCAACGCTATccaacgagcttctaaattgctgattttaaa
gtaaatttgacaaaaagttatgtcctcAACCAACAAGtaGGTAGAATGCA
TCGTGCTTACCAATCGATAACTCCTGCCAACAATAAACTTTTAAAGCAGA
GATGGGATATGACAAGATATGATACACATCGGAAAAAGGTTCGTCAGGCA
AGCGCAGTGATCGATAACCATGCCCCCTGTACATATTTGCATCTACActt
gaaacttaaaaaaatgCAGATTGAGGGAGAAAACTTAGCAACTGTGGAAA
GAGACAATCGAATTTTATTGGAGAAAATGTCACATATCATGAGAACCAAA
GGGCGTGTAGATAATCGCAACTACTACGAACACAAAAGTTTGAATAAAAC
CAAACGTCAGCGTGAACTTCTTCGAGTAACACACGAAAATCAGGCTATAT
TGAAAAGAATAACATCGAAAGAACCACATTTGAACCATTTACATTGGGAG
GAAGAATGGAAAGCTAACCAACGATACATGGATAATATCGCAAAATATCC
CAAGGATTGGTATGAAGCTATCNCTATCCAACGCTATccaacgagcttct
aa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031901XLOC_031901Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050376-proteinTCONS_00050376-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050376-exon-scaffold_17-1491911889:78175..78227TCONS_00050376-exon-scaffold_17-1491911889:78175..78227Clytia hemisphaericaexon
TCONS_00050376-exon-scaffold_17-1510915933:78175..78227TCONS_00050376-exon-scaffold_17-1510915933:78175..78227Clytia hemisphaericaexon
TCONS_00050376-exon-scaffold_17-1575043694:78175..78227TCONS_00050376-exon-scaffold_17-1575043694:78175..78227Clytia hemisphaericaexon
TCONS_00050376-exon-scaffold_17-1491911889:85075..85175TCONS_00050376-exon-scaffold_17-1491911889:85075..85175Clytia hemisphaericaexon
TCONS_00050376-exon-scaffold_17-1510915933:85075..85175TCONS_00050376-exon-scaffold_17-1510915933:85075..85175Clytia hemisphaericaexon
TCONS_00050376-exon-scaffold_17-1575043694:85075..85175TCONS_00050376-exon-scaffold_17-1575043694:85075..85175Clytia hemisphaericaexon
TCONS_00050376-exon-scaffold_17-1491911889:85406..85486TCONS_00050376-exon-scaffold_17-1491911889:85406..85486Clytia hemisphaericaexon
TCONS_00050376-exon-scaffold_17-1510915933:85406..85486TCONS_00050376-exon-scaffold_17-1510915933:85406..85486Clytia hemisphaericaexon
TCONS_00050376-exon-scaffold_17-1575043694:85406..85486TCONS_00050376-exon-scaffold_17-1575043694:85406..85486Clytia hemisphaericaexon
TCONS_00050376-exon-scaffold_17-1491911889:85661..85834TCONS_00050376-exon-scaffold_17-1491911889:85661..85834Clytia hemisphaericaexon
TCONS_00050376-exon-scaffold_17-1510915933:85661..85834TCONS_00050376-exon-scaffold_17-1510915933:85661..85834Clytia hemisphaericaexon
TCONS_00050376-exon-scaffold_17-1575043694:85661..85834TCONS_00050376-exon-scaffold_17-1575043694:85661..85834Clytia hemisphaericaexon
TCONS_00050376-exon-scaffold_17-1491911889:86036..86089TCONS_00050376-exon-scaffold_17-1491911889:86036..86089Clytia hemisphaericaexon
TCONS_00050376-exon-scaffold_17-1510915933:86036..86089TCONS_00050376-exon-scaffold_17-1510915933:86036..86089Clytia hemisphaericaexon
TCONS_00050376-exon-scaffold_17-1575043694:86036..86089TCONS_00050376-exon-scaffold_17-1575043694:86036..86089Clytia hemisphaericaexon
TCONS_00050376-exon-scaffold_17-1491911889:88035..88756TCONS_00050376-exon-scaffold_17-1491911889:88035..88756Clytia hemisphaericaexon
TCONS_00050376-exon-scaffold_17-1510915933:88035..88756TCONS_00050376-exon-scaffold_17-1510915933:88035..88756Clytia hemisphaericaexon
TCONS_00050376-exon-scaffold_17-1575043694:88035..88756TCONS_00050376-exon-scaffold_17-1575043694:88035..88756Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:78175..88756 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.694024	0	1.06972	0.0117123	14.2154	0.217665	2.26309	0.33091	0.128063	2.57383	0.363654	0.169953	0	0.196501	1.76045	2.09428	3.28324	0.894041	1.32288	0	1.63934	5.24256	2.43891	8.31455	2.05571	3.76147	2.55268	0.00900016	5.84739	0.0456362
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029488Hmw/KIAA1430
Blast
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BLAST of TCONS_00050376 vs. Swiss-Prot (Human)
Match: GABPA (GA-binding protein alpha chain OS=Homo sapiens GN=GABPA PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.851e-49
Identity = 83/113 (73.45%), Postives = 97/113 (85.84%), Query Frame = -3 
Query:  758 ASPGS-----GQIQLWQFLLELLTEKNMKDIIMWVGEEGAFKLVDPERVAQLWGERKNKPSMNYEKLSRALRYYYDGDLIHKVCGKRFVYQFVCDLKMLLGYSAAELSQLVSE 1081
            +SPG+     GQIQLWQFLLELLT+K+ +D I WVG+EG FKL  PE VAQ WG+RKNKP+MNYEKLSRALRYYYDGD+I KV GKRFVY+FVCDLK L+GYSAAEL++LV+E
Sbjct:  308 SSPGNRTGNNGQIQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVTE 420
The following BLAST results are available for this feature:
BLAST of TCONS_00050376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GABPA2.851e-4973.45GA-binding protein alpha chain OS=Homo sapiens GN=... [more]
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