TCONS_00050402 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050402
Unique NameTCONS_00050402
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050402 ID=TCONS_00050402|Name=TCONS_00050402|organism=Clytia hemisphaerica|type=transcript|length=463bp
aattattctgttggtatatattttcttacattttgttaaacacacgcaaa
aAAACCTTCTacatgttcgaactcgatactttttttcgggacaccctgta
cgtTACTGACCCAGGATTGGTATTTTTATATAGACAAACTAGAAACTTGA
AAAGGAGTGCAGTTAAATCAATACTATTTTACTTTGTTAGAAATCAtgtt
gaaagatttttaaatctCACATTTTTGGTCATGAGGTGTCaccattttga
taaaatacagTTCGTGCTAGTTTTCTAACCTCTTTAATTTTAAATACCAC
TTTATAAAGTCTTTAAATAGTGCAATcgttttttgtccgttttacttTCA
GTTGATCATGAGTTTGTATGAGTCACCGTGGcattattgttttgattaga
AGCGGTTAAATCCTGACAATGcggaaactttaaatttttattttttggcg
tcTTCGATGTAGG
Run BLAST on NCBI

transcript from alignment at scaffold_17:50282..50744

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050402 ID=TCONS_00050402|Name=TCONS_00050402|organism=Clytia hemisphaerica|type=transcript|length=463bp|location=Sequence derived from alignment at scaffold_17:50282..50744 (Clytia hemisphaerica)
CCTACATCGAAgacgccaaaaaataaaaatttaaagtttccgCATTGTCA
GGATTTAACCGCTtctaatcaaaacaataatgCCACGGTGACTCATACAA
ACTCATGATCAACTGAaagtaaaacggacaaaaaacgATTGCACTATTTA
AAGACTTTATAAAGTGGTATTTAAAATTAAAGAGGTTAGAAAACTAGCAC
GAActgtattttatcaaaatggtGACACCTCATGACCAAAAATGTGagat
ttaaaaatctttcaacaTGATTTCTAACAAAGTAAAATAGTATTGATTTA
ACTGCACTCCTTTTCAAGTTTCTAGTTTGTCTATATAAAAATACCAATCC
TGGGTCAGTAacgtacagggtgtcccgaaaaaaagtatcgagttcgaaca
tgtAGAAGGTTTttttgcgtgtgtttaacaaaatgtaagaaaatatatac
caacagaataatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031913XLOC_031913Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050402-exon-scaffold_17-1491911889:50282..50744TCONS_00050402-exon-scaffold_17-1491911889:50282..50744Clytia hemisphaericaexon
TCONS_00050402-exon-scaffold_17-1510915933:50282..50744TCONS_00050402-exon-scaffold_17-1510915933:50282..50744Clytia hemisphaericaexon
TCONS_00050402-exon-scaffold_17-1575043694:50282..50744TCONS_00050402-exon-scaffold_17-1575043694:50282..50744Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:50282..50744 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.279352	0.561029	0.632594	0.310601	1.31853	1.68265	0.729302	0.509646	0.119371	0.600325	0	0.186047	3.09552	5.4818	2.60715	2.55344	5.95508	4.46438	4.53263	5.06833	7.50236	8.14235	4.41508	2.18399	1.35985	2.59081	3.63895	0.413288	0.314044	0.321412
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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