TCONS_00050404 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050404
Unique NameTCONS_00050404
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050404 ID=TCONS_00050404|Name=TCONS_00050404|organism=Clytia hemisphaerica|type=transcript|length=329bp
cccggttgttcaaaagtggattagcgGCCGATTAGCTTAATTTTCGATTA
AATCTCGATTAGCGCCGATTAGCACAGAACCGTCGGTTGTTCGAAAAAAA
TTAAGCTTAAATCTGGATTAAATCCCGATTAAATCGGCCTATTTTTAATC
CTGCTCTGACCCAGGATTAACGAGGATTAAGAagcttttttctacaaaaa
gagtGAAGTCACTGCATTGAagtgagaaattcgaacgaaaaaatattttc
gaatgttttgaaaacgttcgaaaagtgacgtcaagattaagatttttgaa
aacacaggcaaaatgtccacgattagtta
Run BLAST on NCBI

transcript from alignment at scaffold_17:105074..105402

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050404 ID=TCONS_00050404|Name=TCONS_00050404|organism=Clytia hemisphaerica|type=transcript|length=329bp|location=Sequence derived from alignment at scaffold_17:105074..105402 (Clytia hemisphaerica)
taactaatcgtggacattttgcctgtgttttcaaaaatcttaatcttgac
gtcacttttcgaacgttttcaaaacattcgaaaatattttttcgttcgaa
tttctcactTCAATGCAGTGACTTCactctttttgtagaaaaaagctTCT
TAATCCTCGTTAATCCTGGGTCAGAGCAGGATTAAAAATAGGCCGATTTA
ATCGGGATTTAATCCAGATTTAAGCTTAATTTTTTTCGAACAACCGACGG
TTCTGTGCTAATCGGCGCTAATCGAGATTTAATCGAAAATTAAGCTAATC
GGCcgctaatccacttttgaacaaccggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031915XLOC_031915Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050404-exon-scaffold_17-1491911889:105074..105402TCONS_00050404-exon-scaffold_17-1491911889:105074..105402Clytia hemisphaericaexon
TCONS_00050404-exon-scaffold_17-1510915933:105074..105402TCONS_00050404-exon-scaffold_17-1510915933:105074..105402Clytia hemisphaericaexon
TCONS_00050404-exon-scaffold_17-1575043694:105074..105402TCONS_00050404-exon-scaffold_17-1575043694:105074..105402Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:105074..105402 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.74874	0.829178	5.6926	4.68985	0.234246	1.33276	1.63961	2.37774	0	0.731628	3.85509	2.29816	0.844759	1.36124	1.11961	1.32793	1.59894	0.377266	3.74654	0.268616	1.37804	4.17753	0	0.509894	0.229096	1.24219	3.57621	0.753841	0	0.609013
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050404 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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