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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050405 ID=TCONS_00050405|Name=TCONS_00050405|organism=Clytia hemisphaerica|type=transcript|length=1383bp
GTTTTTTAAACATGAGAACTTTGATAAAAACTTTGAACTACAGTACCATA
AAATGAAGATGAGAAAACAATGAACTACATTCTAATTCCAAGATATTCGA
ACAAATGAGTTGGTAAATGTTGATGGACCAAATCTTCTTCACTGAAAGAC
GTCAACACTGCAAGACGTGCTAAATGTTTCAATGAAAGTCCCTTCTctac
aaagtcaaaatgaaagattttgaaatccATTTCATAATAGCCATCTCCAA
CAGGAAGTAAACTTGTGATAGCAGCTTCTTCCATATTCCAGTTCAATGAA
AATTTATGGTCATTGAATTTGGAAAGGGTATCGAAAACGATATCTTTGGA
TTTCTTTCGATTTTCGACATCAATCAAGCAAAACTGCTGGTGATCATCAC
CTTCTTCGTAATAAACGGGCAACAACTCTCGGTCCAGTCTCCTCCACGGA
CGCTTGACGTAATAATCATCACCATCATTCCCATCAACATCAAACTTGCC
ATCTTTTATCTTTTTGATCAGCCTGACTTGACCATCCTCCAAGTTGTATT
CTCGTAAATCTCCATTAGCAGAATAAAAAGTCACAACTAAAGAATTTATA
TCTTCGTATTTGAATTGGTACACCATGTACTCGACTTCATTTTCATCCAC
CCATGGAATCGAGTACGAAAATTTATAATCCCCAGCAGCGTCATATTGAC
AAACATTAAACGTATCGGTTTCATAGTGATCTgtattataaaaatataat
cgGTCCTTAGTAAGGATCATTCTTGGAGCATAGTTGTCTATAAGATCACC
ACNGGTCCTTAGTGAGGATCATTCTTGGAGCATAATTGTCTATAAGATCA
CCATTATTCGACTTGAACACATTCGAATCACTCAAATCAATTTCTTTTCT
CTTGGAATGCCAAAACTTTCCATCTTCGTTCCAGTGGACGACATCAAAAC
AACAAGCAGGAAAGTAGCTTTCAGGTCGACGGTCCTCCACTCCATGGAAG
TCAAAAGCTTGTAAAAAGCATGTTTTTTCATCGGATTTGAAGTGAAACTC
GACAGAATTGTATTCTTCAAAAGTGTACCTTAACGAAATGTCAGGTAGCC
TGGAATCGTCTATCCGTGTTTCCAGGTGACTCGATTTAATTATTCCAAAA
ACATTGTTTTTCAGAATATCAAACACATTGAAATAATAAAGGTCGACAAC
AAGTTGATTAGGACGATCTTTCACGGCTGTTGATTTCCAAGAGATCGTAT
GAATAATAGTACCATCCTGCTCATCAAAATAAGATTTCCTGTCGTAAACC
TCAATATCATACATTTGGTTCGTGTGAATTCTCCAAACCCTCCGCTCCAA
CAGGTTTCTGTTTGCGTTAAACGACACAATGTG Run BLAST on NCBI protein sequence of TCONS_00050405-protein >TCONS_00050405-protein ID=TCONS_00050405-protein|Name=TCONS_00050405-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MILTKDRLYFYNTDHYETDTFNVCQYDAAGDYKFSYSIPWVDENEVEYMV
YQFKYEDINSLVVTFYSANGDLREYNLEDGQVRLIKKIKDGKFDVDGNDG
DDYYVKRPWRRLDRELLPVYYEEGDDHQQFCLIDVENRKKSKDIVFDTLS
KFNDHKFSLNWNMEEAAITSLLPVGDGYYEMDFKIFHFDFVEKGLSLKHL
ARLAVLTSFSEEDLVHQHLPTHLFEYLGIRM Run BLAST on NCBI transcript from alignment at scaffold_17:170591..171973 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050405 ID=TCONS_00050405|Name=TCONS_00050405|organism=Clytia hemisphaerica|type=transcript|length=1383bp|location=Sequence derived from alignment at scaffold_17:170591..171973 (Clytia hemisphaerica)
CACATTGTGTCGTTTAACGCAAACAGAAACCTGTTGGAGCGGAGGGTTTG
GAGAATTCACACGAACCAAATGTATGATATTGAGGTTTACGACAGGAAAT
CTTATTTTGATGAGCAGGATGGTACTATTATTCATACGATCTCTTGGAAA
TCAACAGCCGTGAAAGATCGTCCTAATCAACTTGTTGTCGACCTTTATTA
TTTCAATGTGTTTGATATTCTGAAAAACAATGTTTTTGGAATAATTAAAT
CGAGTCACCTGGAAACACGGATAGACGATTCCAGGCTACCTGACATTTCG
TTAAGGTACACTTTTGAAGAATACAATTCTGTCGAGTTTCACTTCAAATC
CGATGAAAAAACATGCTTTTTACAAGCTTTTGACTTCCATGGAGTGGAGG
ACCGTCGACCTGAAAGCTACTTTCCTGCTTGTTGTTTTGATGTCGTCCAC
TGGAACGAAGATGGAAAGTTTTGGCATTCCAAGAGAAAAGAAATTGATTT
GAGTGATTCGAATGTGTTCAAGTCGAATAATGGTGATCTTATAGACAATT
ATGCTCCAAGAATGATCCTCACTAAGGACCNGTGGTGATCTTATAGACAA
CTATGCTCCAAGAATGATCCTTACTAAGGACcgattatatttttataata
cAGATCACTATGAAACCGATACGTTTAATGTTTGTCAATATGACGCTGCT
GGGGATTATAAATTTTCGTACTCGATTCCATGGGTGGATGAAAATGAAGT
CGAGTACATGGTGTACCAATTCAAATACGAAGATATAAATTCTTTAGTTG
TGACTTTTTATTCTGCTAATGGAGATTTACGAGAATACAACTTGGAGGAT
GGTCAAGTCAGGCTGATCAAAAAGATAAAAGATGGCAAGTTTGATGTTGA
TGGGAATGATGGTGATGATTATTACGTCAAGCGTCCGTGGAGGAGACTGG
ACCGAGAGTTGTTGCCCGTTTATTACGAAGAAGGTGATGATCACCAGCAG
TTTTGCTTGATTGATGTCGAAAATCGAAAGAAATCCAAAGATATCGTTTT
CGATACCCTTTCCAAATTCAATGACCATAAATTTTCATTGAACTGGAATA
TGGAAGAAGCTGCTATCACAAGTTTACTTCCTGTTGGAGATGGCTATTAT
GAAATggatttcaaaatctttcattttgactttgtagAGAAGGGACTTTC
ATTGAAACATTTAGCACGTCTTGCAGTGTTGACGTCTTTCAGTGAAGAAG
ATTTGGTCCATCAACATTTACCAACTCATTTGTTCGAATATCTTGGAATT
AGAATGTAGTTCATTGTTTTCTCATCTTCATTTTATGGTACTGTAGTTCA
AAGTTTTTATCAAAGTTCTCATGTTTAAAAAAC Coding sequence (CDS) from alignment at scaffold_17:170591..171973 >TCONS_00050405 ID=TCONS_00050405|Name=TCONS_00050405|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at scaffold_17:170591..171973 (Clytia hemisphaerica)
ATGATCCTTACTAAGGACcgattatatttttataatacAGATCACTATGA
AACCGATACGTTTAATGTTTGTCAATATGACGCTGCTGGGGATTATAAAT
TTTCGTACTCGATTCCATGGGTGGATGAAAATGAAGTCGAGTACATGGTG
TACCAATTCAAATACGAAGATATAAATTCTTTAGTTGTGACTTTTTATTC
TGCTAATGGAGATTTACGAGAATACAACTTGGAGGATGGTCAAGTCAGGC
TGATCAAAAAGATAAAAGATGGCAAGTTTGATGTTGATGGGAATGATGGT
GATGATTATTACGTCAAGCGTCCGTGGAGGAGACTGGACCGAGAGTTGTT
GCCCGTTTATTACGAAGAAGGTGATGATCACCAGCAGTTTTGCTTGATTG
ATGTCGAAAATCGAAAGAAATCCAAAGATATCGTTTTCGATACCCTTTCC
AAATTCAATGACCATAAATTTTCATTGAACTGGAATATGGAAGAAGCTGC
TATCACAAGTTTACTTCCTGTTGGAGATGGCTATTATGAAATggatttca
aaatctttcattttgactttgtagAGAAGGGACTTTCATTGAAACATTTA
GCACGTCTTGCAGTGTTGACGTCTTTCAGTGAAGAAGATTTGGTCCATCA
ACATTTACCAACTCATTTGTTCGAATATCTTGGAATTAGAATGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050405-exon-scaffold_17-1491911889:170591..171973 | TCONS_00050405-exon-scaffold_17-1491911889:170591..171973 | Clytia hemisphaerica | exon |
| TCONS_00050405-exon-scaffold_17-1510915933:170591..171973 | TCONS_00050405-exon-scaffold_17-1510915933:170591..171973 | Clytia hemisphaerica | exon |
| TCONS_00050405-exon-scaffold_17-1575043694:170591..171973 | TCONS_00050405-exon-scaffold_17-1575043694:170591..171973 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:170591..171973 . |
Blast
The following BLAST results are available for this feature:
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