TCONS_00050409 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050409
Unique NameTCONS_00050409
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length858

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050409 ID=TCONS_00050409|Name=TCONS_00050409|organism=Clytia hemisphaerica|type=transcript|length=858bp
CCGGACCCACAAAGGCATGTGTCGTGATCGCAAGATAACTTCTATACTTG
GAGATTAAGGTGTTTgacgaccctgccgattccccAGACAATCTGGGGAT
TTCTTGTAAATGTCCGGGGATTTTaacatttattttgaaacttagtGCCC
CGGACGCCTCAAACTTGGTGCGTTGTTCGCGCTATGCACGTAAAGATAGT
GAAATATGCCTTACTGGCACTGTGATGTGCCGTACTGGCTATGTGGCGTG
CCGTACTGGCCGCGCAACGTACTCTAACGGCCGCGCAGCGTGTATACCAT
ATTGTGCGGTACATTTAGATGGTAGCGCGGCGTGCCTCTACGGACTCGCA
TGGTGGTGCACAAGTTATAAATGTCCGGCGGGGaaatatagttttttttc
aatccCCAGACATTTACCCCGGATTGTccggggaatcggcagggtcgtgG
TGTTTGCTGCGTGTGCTTGAAGGAATACAGCTGTGACTCTGCTTTTAGGT
gcttaatatttgtttttaagtacgGGTTACGTACCGGGACATTTTCTATG
CATGAAGTGGATGTTGTTTATAGAAGAATCAAAGCAGTCAGTTAAAAAAG
AACCACAgagataccgtcaactgctccaataTGGGACTATCTTACACAAC
ATGagacggccattccaccaccatttcaccgaaccaccaaagtcatttga
tttgagtttaatgaaccgcgtatgaaaaaatttctctttcgcacagagta
ggcttttaaatcgaaatatgaaaaaatccgtagtggaacacgcgcgaatg
tgagcgtttgacgtcactcgcgcagcaagttacacactcgctatttgtta
atctCATC
Run BLAST on NCBI

transcript from alignment at scaffold_170:681..1538

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050409 ID=TCONS_00050409|Name=TCONS_00050409|organism=Clytia hemisphaerica|type=transcript|length=858bp|location=Sequence derived from alignment at scaffold_170:681..1538 (Clytia hemisphaerica)
GATGagattaacaaatagcgagtgtgtaacttgctgcgcgagtgacgtca
aacgctcacattcgcgcgtgttccactacggattttttcatatttcgatt
taaaagcctactctgtgcgaaagagaaattttttcatacgcggttcatta
aactcaaatcaaatgactttggtggttcggtgaaatggtggtggaatggc
cgtctCATGTTGTGTAAGATAGTCCCAtattggagcagttgacggtatct
cTGTGGTTCTTTTTTAACTGACTGCTTTGATTCTTCTATAAACAACATCC
ACTTCATGCATAGAAAATGTCCCGGTACGTAACCcgtacttaaaaacaaa
tattaagcACCTAAAAGCAGAGTCACAGCTGTATTCCTTCAAGCACACGC
AGCAAACACcacgaccctgccgattccccggACAATCCGGGGTAAATGTC
TGGggattgaaaaaaaactatatttCCCCGCCGGACATTTATAACTTGTG
CACCACCATGCGAGTCCGTAGAGGCACGCCGCGCTACCATCTAAATGTAC
CGCACAATATGGTATACACGCTGCGCGGCCGTTAGAGTACGTTGCGCGGC
CAGTACGGCACGCCACATAGCCAGTACGGCACATCACAGTGCCAGTAAGG
CATATTTCACTATCTTTACGTGCATAGCGCGAACAACGCACCAAGTTTGA
GGCGTCCGGGGCactaagtttcaaaataaatgttAAAATCCCCGGACATT
TACAAGAAATCCCCAGATTGTCTggggaatcggcagggtcgtcAAACACC
TTAATCTCCAAGTATAGAAGTTATCTTGCGATCACGACACATGCCTTTGT
GGGTCCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031919XLOC_031919Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050409-exon-scaffold_170-1491911889:681..1538TCONS_00050409-exon-scaffold_170-1491911889:681..1538Clytia hemisphaericaexon
TCONS_00050409-exon-scaffold_170-1510915933:681..1538TCONS_00050409-exon-scaffold_170-1510915933:681..1538Clytia hemisphaericaexon
TCONS_00050409-exon-scaffold_170-1575043694:681..1538TCONS_00050409-exon-scaffold_170-1575043694:681..1538Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_170supercontigscaffold_170:681..1538 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.893422	1.28341	1.25632	1.98205	1.43744	1.3559	0.704289	1.57372	0.738107	0.996962	0.698707	1.3932	1.16396	1.16647	1.20117	1.2075	1.56333	1.65287	1.15488	0.965796	1.27685	1.42098	0.250712	0.585433	1.01169	0.978205	1.3304	0.803391	1.21348	1.57074
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050409 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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