|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050416 ID=TCONS_00050416|Name=TCONS_00050416|organism=Clytia hemisphaerica|type=transcript|length=1779bpRun BLAST on NCBI protein sequence of TCONS_00050416-protein >TCONS_00050416-protein ID=TCONS_00050416-protein|Name=TCONS_00050416-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp MLLLFFILTREFKLKNQMILNIMSTDANDSTEGSSFVTMQDAVSAMESEERun BLAST on NCBI transcript from alignment at scaffold_171:89746..102575+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050416 ID=TCONS_00050416|Name=TCONS_00050416|organism=Clytia hemisphaerica|type=transcript|length=12830bp|location=Sequence derived from alignment at scaffold_171:89746..102575+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_171:89746..102575+ >TCONS_00050416 ID=TCONS_00050416|Name=TCONS_00050416|organism=Clytia hemisphaerica|type=CDS|length=13398bp|location=Sequence derived from alignment at scaffold_171:89746..102575+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050416 vs. Swiss-Prot (Human)
Match: UBR7 (Putative E3 ubiquitin-protein ligase UBR7 OS=Homo sapiens GN=UBR7 PE=1 SV=2) HSP 1 Score: 256.914 bits (655), Expect = 3.406e-78 Identity = 155/386 (40.16%), Postives = 210/386 (54.40%), Query Frame = 3
Query: 228 AVFGAGDEKNCTYIMGYLSRQAVFSCQTCDPTFEREAGLCYACSLDCHHEHDLVELYTKRNFKCDCGNSKYGEFKCKLQETKSAINEENKYNHNFKGEYCTCNRXXXXXXXXXXXXMIQCIVCEDWFHSRHLGSLPPMC--YEEMVCDGCVQKYPFFNRYKQLTEGPATRLTNE-------------------ETTTSIDVTTCPSPSKKRRKMSDNNNVEDDGEPSTSSQDSCKI-------SIPLDEEAGTK--------------ALYFKSKWRSELCRCSKCMAMYEEKGLGFLTSDEDTIAVYEKKGK-ENSSRVMESAADQISQMNRVQQVELMRGYQDLKEKLHGFLEGFSKTDQVVKKEDIENFFEDLNKKRRERSNN 1256
AV G D + C+Y G + RQA+++C TC P E AG+C ACS +CH H L ELYTKRNF+CDCGNSK+ +CKL K+ +N NKYN NF G YC C RPYPDPEDE+ DEMIQC+VCEDWFH RHLG++PP ++EMVC C+++ F Y + T+++ E E D T ++ + VE + EP S + S+ + ++G K A Y+ WRS+LC C CM MY + + FLT + DT+ YE KGK ++ + D +S MNRVQQVEL+ Y DLK +L +L+ F+ VVK+EDI+ FFE+ K+R R +
Sbjct: 36 AVLGGSDSEKCSYSQGSVKRQALYACSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLLPDKAKVNSGNKYNDNFFGLYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAIPPESGDFQEMVCQACMKRCSFLWAYA--AQLAVTKISTEDDGLVRNIDGIGDQEVIKPENGEHQDSTLKEDVPEQGKDDVREVKVEQNSEPCAGSSSESDLQTVFKNESLNAESKSGCKLQELKAKQLIKKDTATYWPLNWRSKLCTCQDCMKMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPLMDTLSSMNRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDG 419 The following BLAST results are available for this feature:
BLAST of TCONS_00050416 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.