TCONS_00050436 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050436
Unique NameTCONS_00050436
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length349

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050436 ID=TCONS_00050436|Name=TCONS_00050436|organism=Clytia hemisphaerica|type=transcript|length=349bp
CTTTCGGAGAAGAATATTCTAGACGACAATACAAATGATGAAACTCAGAA
TCAAAATGTGACTCCAAAAAGTCTTTCTGAAGGTGAAATCGTCGTAAAAT
TGAAAGACATGTCTAGTGAGGAAAAACACTACGTTCAAGCTAAAGATTTT
TCATCAACTTCGAGTGTGGAAAACGAAAAGGATAAAAATGATACACTCTC
TCAAACCCTTTAACCAGTAAACAAACTACTGCAAGAGGTTCAAAGAAAGT
TTTAAGAAGTTAAAGACCTCTTGAAGGGTCTTGAGACAATGGGATATTAT
CAACAAGAGttattaccttaaaggaagaaattttggcgaaaaagaaatt
Run BLAST on NCBI

transcript from alignment at scaffold_171:12726..13074

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050436 ID=TCONS_00050436|Name=TCONS_00050436|organism=Clytia hemisphaerica|type=transcript|length=349bp|location=Sequence derived from alignment at scaffold_171:12726..13074 (Clytia hemisphaerica)
aatttctttttcgccaaaatttcttcctttaaggtaataaCTCTTGTTGA
TAATATCCCATTGTCTCAAGACCCTTCAAGAGGTCTTTAACTTCTTAAAA
CTTTCTTTGAACCTCTTGCAGTAGTTTGTTTACTGGTTAAAGGGTTTGAG
AGAGTGTATCATTTTTATCCTTTTCGTTTTCCACACTCGAAGTTGATGAA
AAATCTTTAGCTTGAACGTAGTGTTTTTCCTCACTAGACATGTCTTTCAA
TTTTACGACGATTTCACCTTCAGAAAGACTTTTTGGAGTCACATTTTGAT
TCTGAGTTTCATCATTTGTATTGTCGTCTAGAATATTCTTCTCCGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031938XLOC_031938Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050436-exon-scaffold_171-1491911889:12726..13074TCONS_00050436-exon-scaffold_171-1491911889:12726..13074Clytia hemisphaericaexon
TCONS_00050436-exon-scaffold_171-1510915933:12726..13074TCONS_00050436-exon-scaffold_171-1510915933:12726..13074Clytia hemisphaericaexon
TCONS_00050436-exon-scaffold_171-1575043694:12726..13074TCONS_00050436-exon-scaffold_171-1575043694:12726..13074Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_171supercontigscaffold_171:12726..13074 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.77388	0.952677	0.573852	0.280712	0.34174	0.270048	0	0	0	0.26451	0.770221	0.168771	0.168536	0	0.287791	0.617689	0	0.38997	1.07753	0	0.490026	0.816189	0.323987	0.528317	0.272077	1.21411	1.04243	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050436 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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