TCONS_00050438 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050438
Unique NameTCONS_00050438
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050438 ID=TCONS_00050438|Name=TCONS_00050438|organism=Clytia hemisphaerica|type=transcript|length=381bp
tcaaattttgacattttagtccgTCTGTGGTGGAAGAGTTTCGAAATAAC
AGAAAATTCGATTAGGTGTCCGAGGtatctagcctggatatccaggctgt
aatcTATTTCCCTGGCATTTTGTGtcatatttatgttttttgtttacggt
ctggtctaCCTAGACCAGCTGTATCCAAATCTGGGGATGCAATAAAATGT
GGCAGAAGTCCTGTCATAGAAGATTCAACATTGTGCTGAATATTCGGCCT
GGTGTGTTTGCATTTATCAATTTGTGTTTTGATATAGGTTTTGTTAGACA
CACATTATCTTTAGTTATACATGcacttcattttgaaaaaagaaaacatg
tttatataattagaaaaatatttgtcTATAA
Run BLAST on NCBI

transcript from alignment at scaffold_171:68554..68934

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050438 ID=TCONS_00050438|Name=TCONS_00050438|organism=Clytia hemisphaerica|type=transcript|length=381bp|location=Sequence derived from alignment at scaffold_171:68554..68934 (Clytia hemisphaerica)
TTATAgacaaatatttttctaattatataaacatgttttcttttttcaaa
atgaagtgCATGTATAACTAAAGATAATGTGTGTCTAACAAAACCTATAT
CAAAACACAAATTGATAAATGCAAACACACCAGGCCGAATATTCAGCACA
ATGTTGAATCTTCTATGACAGGACTTCTGCCACATTTTATTGCATCCCCA
GATTTGGATACAGCTGGTCTAGGtagaccagaccgtaaacaaaaaacata
aatatgaCACAAAATGCCAGGGAAATAgattacagcctggatatccaggc
tagataCCTCGGACACCTAATCGAATTTTCTGTTATTTCGAAACTCTTCC
ACCACAGAcggactaaaatgtcaaaatttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031940XLOC_031940Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050438-exon-scaffold_171-1491911889:68554..68934TCONS_00050438-exon-scaffold_171-1491911889:68554..68934Clytia hemisphaericaexon
TCONS_00050438-exon-scaffold_171-1510915933:68554..68934TCONS_00050438-exon-scaffold_171-1510915933:68554..68934Clytia hemisphaericaexon
TCONS_00050438-exon-scaffold_171-1575043694:68554..68934TCONS_00050438-exon-scaffold_171-1575043694:68554..68934Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_171supercontigscaffold_171:68554..68934 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.206266	0.201142	0.233545	0	1.94713	0.879227	0.530375	0.49653	1.0429	1.5071	0.208975	1.37372	1.64617	2.84928	1.28837	0	1.0839	1.26967	0.877061	1.37667	1.9943	0.583649	0.473001	0.64504	0.442917	0.59294	0.565663	0.603691	0.686817	0.699758
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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