TCONS_00050439 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050439
Unique NameTCONS_00050439
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length223

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050439 ID=TCONS_00050439|Name=TCONS_00050439|organism=Clytia hemisphaerica|type=transcript|length=223bp
CTAGACTGTTGATTTTGGACTTCTTAATTATTGAATAAAGCATATttatt
tcattatatttttaaattgtacATCTACAAGTTTCTTAATATAGTTTTGT
AGCCTTTAAATtacttcatatttttttattgaattattttttgctCCATT
AGCGTAAGTAACTTGTAGAAAGTTCGAgctaaggggccgtccacatagta
cgtacacacTAAAGGGGGAAGGG
Run BLAST on NCBI

transcript from alignment at scaffold_171:69002..69224

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050439 ID=TCONS_00050439|Name=TCONS_00050439|organism=Clytia hemisphaerica|type=transcript|length=223bp|location=Sequence derived from alignment at scaffold_171:69002..69224 (Clytia hemisphaerica)
CCCTTCCCCCTTTAgtgtgtacgtactatgtggacggccccttagcTCGA
ACTTTCTACAAGTTACTTACGCTAATGGagcaaaaaataattcaataaaa
aaatatgaagtaATTTAAAGGCTACAAAACTATATTAAGAAACTTGTAGA
TgtacaatttaaaaatataatgaaataaATATGCTTTATTCAATAATTAA
GAAGTCCAAAATCAACAGTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031941XLOC_031941Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050439-exon-scaffold_171-1491911889:69002..69224TCONS_00050439-exon-scaffold_171-1491911889:69002..69224Clytia hemisphaericaexon
TCONS_00050439-exon-scaffold_171-1510915933:69002..69224TCONS_00050439-exon-scaffold_171-1510915933:69002..69224Clytia hemisphaericaexon
TCONS_00050439-exon-scaffold_171-1575043694:69002..69224TCONS_00050439-exon-scaffold_171-1575043694:69002..69224Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_171supercontigscaffold_171:69002..69224 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.54116	3.45318	0	5.2302	1.59182	2.51575	0	1.42073	11.9363	19.7133	15.5466	14.1503	19.6259	13.0443	6.03236	10.0701	12.4056	11.8071	15.0573	14.4434	3.42379	8.35002	10.8273	2.46089	0	1.13106	3.23709	10.3641	2.62027	4.00446
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top