TCONS_00050445 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050445
Unique NameTCONS_00050445
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050445 ID=TCONS_00050445|Name=TCONS_00050445|organism=Clytia hemisphaerica|type=transcript|length=355bp
GGATATGTTTGTCTGGATTTATTTCTAcctcaagaaaaaagaacagtcaT
AAGACGAAATTTATACAACGGAGAGAATGAATATTGTCATTGTAGAAACT
CAAAAATTATGGGAATGATTTGCTTTGAATCTTGTTTGTTGTGAGGAATT
TTtggaggattttattttgtccatcaTGATACAGCATGACCCATGGCCTG
CAAAATACAACAGCAGCAGAAGCATATGATAGGGCTATCTAGTgaccaac
aaagacaaaattgttgaattgattGCATATGATTACTGAACCTGTCAAAT
AGTTCCGATATCAAAGAGATTGTAAATAGGGGTAGGGGGTAGagtaactt
ttttg
Run BLAST on NCBI

transcript from alignment at scaffold_171:186423..186777

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050445 ID=TCONS_00050445|Name=TCONS_00050445|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at scaffold_171:186423..186777 (Clytia hemisphaerica)
caaaaaagttactCTACCCCCTACCCCTATTTACAATCTCTTTGATATCG
GAACTATTTGACAGGTTCAGTAATCATATGCaatcaattcaacaattttg
tctttgttggtcACTAGATAGCCCTATCATATGCTTCTGCTGCTGTTGTA
TTTTGCAGGCCATGGGTCATGCTGTATCAtgatggacaaaataaaatcct
ccaAAAATTCCTCACAACAAACAAGATTCAAAGCAAATCATTCCCATAAT
TTTTGAGTTTCTACAATGACAATATTCATTCTCTCCGTTGTATAAATTTC
GTCTTAtgactgttcttttttcttgaggTAGAAATAAATCCAGACAAACA
TATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031947XLOC_031947Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050445-exon-scaffold_171-1491911889:186423..186777TCONS_00050445-exon-scaffold_171-1491911889:186423..186777Clytia hemisphaericaexon
TCONS_00050445-exon-scaffold_171-1510915933:186423..186777TCONS_00050445-exon-scaffold_171-1510915933:186423..186777Clytia hemisphaericaexon
TCONS_00050445-exon-scaffold_171-1575043694:186423..186777TCONS_00050445-exon-scaffold_171-1575043694:186423..186777Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_171supercontigscaffold_171:186423..186777 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.61167	2.8496	2.17062	1.90931	22.7471	18.9222	16.082	18.0532	5.28462	14.435	13.1314	8.77467	10.0231	7.36528	9.23286	7.84546	8.24847	4.57005	11.4087	14.6904	4.80893	8.62629	12.6203	10.2592	10.4726	22.1387	11.6911	9.82254	11.1334	14.1415
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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