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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050482 ID=TCONS_00050482|Name=TCONS_00050482|organism=Clytia hemisphaerica|type=transcript|length=2159bp
tgtacaaagaaattctCGATGAATAAAAGTAGAGGAGTGACTGGGAAGAA
GTTAGTCTAAGTTTATAGAAATAGCTGAATAACTGATAAGCTTTTCTTTC
CCCCTCTTTTCATATAATAATttgtttcattgaaaatgttttttctataT
AAAGTACACTGTAATTTATAAATTTCAACAAATTTATAATATAACTCCta
taaatagaaaattttcaatcatttgcaaaaaaatgaaattaatacATGCC
AGCATATTTACTGTTCCAAAAGCTCAAACATTTAAAATAAAGGTATTATG
TATCCTAAAATAATCCCACCATTAAAAAAAACGaagtttctataaaaaaa
aacacaaaaatttgaattgaagttTTTTTGCAGGAACGACATCAATCAAT
GATAAGCTAAAAACTGCATCATCATTTCAGATTTTATAACAATTTTGAAA
CGAAATACataatacaaaaaaaatgtcaataagAATTGGAATCTCAAAAA
TTCCAAATGAAAACGACACTTTATCATATACCAGAAAATTATAATTTGAA
TCATTTATTCTCTTATTCTCTCTTTTCACATATTTTCTTCACAAGTTATA
TTTCACTTGTTGAAATATTGTATTGTGTTGACAAAAGTAACAAAACTAGC
CTTATGATACCTGATAAGGTCTGCAGGCTGCTGAACTGtattaaaatgaa
aaagcaaaaaatatctGCAGTCTGATTGATTTTAAGATACAATATATCTT
GCATTTTAAAAGTTATAATGGTGGTACTGAAAGATGCTGTCCCATTGAAG
TGGCAGCAGCAATCAAAAGGTCATCAAAAGGTCACTTTTCTAAACAATGT
ATCCTGTGCCTctttttttaagataaaaagtATTATTTTGGTTGCAaaat
aaaccagttatcagcaTCAGACAAAAGCTGTAgttctgaaatatttgttt
taAGAATCTTAGGTAGAAAGAGGTAAACTAAAATTTGcctttctcaaaaa
ataaacctttttcttatttggtaTTACAGGCAGTGGAACCTGTTTAAATT
CTATCAATTATTTAAATCAGTCTTGTCTTAGAGTTGATTGAAAATTGGAA
ATTCATCTAATAGTAAAAACTATCTTTTGCAATACCCAAAGAAATATGTT
TGTTTGTATGTAACcttgccattttcatcatgaagACATGATGTATCTTC
AGTCTCACAGAGTTTACGAAAATCAGCTAATACAGTGTCGTAGTCTGCAA
CATGAACTGAGCAGGCAAACCAGCGAAGATAATAATCTAAACTGGGTAGT
GTTATACAGATATCCTTTTCAATTATGTCTACATGATTGAAACCAGATTT
ATTTGCAAGCTCTTCCAATTCTTCTCTGCTTGATGGATGATAATGATTCA
TCAAAAAATCCACATTAGGTAGTTTCCCTGCAATTGGGCCAATGTTTAAA
GTATTGTTTTTGACAGTGTTGAAAGCAAACATGCCATCCTGTTTCAAGCT
GTCAAAAATGCTTTGGAAAGTTGGAAGCTTTTCTTCTGGTGGTATCCAGT
GCAATACAGTGGAGGACATTGCCAAATCAAAATCTTTCCCATATGTTGAG
CTTTCTTTACCATAAGCTGTGTGAAACTCAAGATGTTTGATATCATGAGT
TTTCGTAGCACTCTCAATTCTATCCATCATTGGGTCAGTGGCAATAACTT
TTCCATTGTCACCAACAAAGTTTGCAAGTTTTACACTATTATTTCCATTT
CCACATCCAACATCAACCATTTTCAAATGTGATTTTTGATATCAATGTGT
CAAAAGTCTTTTCTTGAATCAGCTGGCTAAGGTCTTGGTACTCGGAAACT
CCTTCAACAGTTTGACTCAAGACCATGTTTGTTTATCAATGAAAACCCAA
ACAGGATATAATAATAATCTATTCAATAGCTAAAGCATTGTAAATAATTA
TACCAGACCCTATTACTCAACTTTCCAAACCACTTTTTTACTCAAACTTA
CTCGAACAAGTAAAGTTCAAGTAAACCAATTACTCAAACtcacacaaaat
ttttcaaaaacataagTTTGAGTAATTTAGCCAAACTTACTCGAACAAGT
AAAGTTCAAGTAAACCAATTACTCAAACtcacacaaaatttttcaaaaac
ataagTTTG Run BLAST on NCBI protein sequence of TCONS_00050482-protein >TCONS_00050482-protein ID=TCONS_00050482-protein|Name=TCONS_00050482-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MVDVGCGNGNNSVKLANFVGDNGKVIATDPMMDRIESATKTHDIKHLEFH
TAYGKESSTYGKDFDLAMSSTVLHWIPPEEKLPTFQSIFDSLKQDGMFAF
NTVKNNTLNIGPIAGKLPNVDFLMNHYHPSSREELEELANKSGFNHVDII
EKDICITLPSLDYYLRWFACSVHVADYDTVLADFRKLCETEDTSCLHDEN
GKVTYKQTYFFGYCKR Run BLAST on NCBI transcript from alignment at scaffold_173:2519..4677 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050482 ID=TCONS_00050482|Name=TCONS_00050482|organism=Clytia hemisphaerica|type=transcript|length=2159bp|location=Sequence derived from alignment at scaffold_173:2519..4677 (Clytia hemisphaerica)
CAAActtatgtttttgaaaaattttgtgtgaGTTTGAGTAATTGGTTTAC
TTGAACTTTACTTGTTCGAGTAAGTTTGGCTAAATTACTCAAActtatgt
ttttgaaaaattttgtgtgaGTTTGAGTAATTGGTTTACTTGAACTTTAC
TTGTTCGAGTAAGTTTGAGTAAAAAAGTGGTTTGGAAAGTTGAGTAATAG
GGTCTGGTATAATTATTTACAATGCTTTAGCTATTGAATAGATTATTATT
ATATCCTGTTTGGGTTTTCATTGATAAACAAACATGGTCTTGAGTCAAAC
TGTTGAAGGAGTTTCCGAGTACCAAGACCTTAGCCAGCTGATTCAAGAAA
AGACTTTTGACACATTGATATCAAAAATCACATTTGAAAATGGTTGATGT
TGGATGTGGAAATGGAAATAATAGTGTAAAACTTGCAAACTTTGTTGGTG
ACAATGGAAAAGTTATTGCCACTGACCCAATGATGGATAGAATTGAGAGT
GCTACGAAAACTCATGATATCAAACATCTTGAGTTTCACACAGCTTATGG
TAAAGAAAGCTCAACATATGGGAAAGATTTTGATTTGGCAATGTCCTCCA
CTGTATTGCACTGGATACCACCAGAAGAAAAGCTTCCAACTTTCCAAAGC
ATTTTTGACAGCTTGAAACAGGATGGCATGTTTGCTTTCAACACTGTCAA
AAACAATACTTTAAACATTGGCCCAATTGCAGGGAAACTACCTAATGTGG
ATTTTTTGATGAATCATTATCATCCATCAAGCAGAGAAGAATTGGAAGAG
CTTGCAAATAAATCTGGTTTCAATCATGTAGACATAATTGAAAAGGATAT
CTGTATAACACTACCCAGTTTAGATTATTATCTTCGCTGGTTTGCCTGCT
CAGTTCATGTTGCAGACTACGACACTGTATTAGCTGATTTTCGTAAACTC
TGTGAGACTGAAGATACATCATGTcttcatgatgaaaatggcaagGTTAC
ATACAAACAAACATATTTCTTTGGGTATTGCAAAAGATAGTTTTTACTAT
TAGATGAATTTCCAATTTTCAATCAACTCTAAGACAAGACTGATTTAAAT
AATTGATAGAATTTAAACAGGTTCCACTGCCTGTAAtaccaaataagaaa
aaggtttattttttgagaaaggCAAATTTTAGTTTACCTCTTTCTACCTA
AGATTCTtaaaacaaatatttcagaacTACAGCTTTTGTCTGAtgctgat
aactggtttatttTGCAACCAAAATAATactttttatcttaaaaaaagAG
GCACAGGATACATTGTTTAGAAAAGTGACCTTTTGATGACCTTTTGATTG
CTGCTGCCACTTCAATGGGACAGCATCTTTCAGTACCACCATTATAACTT
TTAAAATGCAAGATATATTGTATCTTAAAATCAATCAGACTGCagatatt
ttttgctttttcattttaataCAGTTCAGCAGCCTGCAGACCTTATCAGG
TATCATAAGGCTAGTTTTGTTACTTTTGTCAACACAATACAATATTTCAA
CAAGTGAAATATAACTTGTGAAGAAAATATGTGAAAAGAGAGAATAAGAG
AATAAATGATTCAAATTATAATTTTCTGGTATATGATAAAGTGTCGTTTT
CATTTGGAATTTTTGAGATTCCAATTcttattgacattttttttgtatta
tGTATTTCGTTTCAAAATTGTTATAAAATCTGAAATGATGATGCAGTTTT
TAGCTTATCATTGATTGATGTCGTTCCTGCAAAAAaacttcaattcaaat
ttttgtgtttttttttatagaaacttCGTTTTTTTTAATGGTGGGATTAT
TTTAGGATACATAATACCTTTATTTTAAATGTTTGAGCTTTTGGAACAGT
AAATATGCTGGCATgtattaatttcatttttttgcaaatgattgaaaatt
ttctatttataGGAGTTATATTATAAATTTGTTGAAATTTATAAATTACA
GTGTACTTTAtatagaaaaaacattttcaatgaaacaaATTATTATATGA
AAAGAGGGGGAAAGAAAAGCTTATCAGTTATTCAGCTATTTCTATAAACT
TAGACTAACTTCTTCCCAGTCACTCCTCTACTTTTATTCATCGagaattt
ctttgtaca Coding sequence (CDS) from alignment at scaffold_173:2519..4677 >TCONS_00050482 ID=TCONS_00050482|Name=TCONS_00050482|organism=Clytia hemisphaerica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_173:2519..4677 (Clytia hemisphaerica)
ATGGTTGATGTTGGATGTGGAAATGGAAATAATAGTGTAAAACTTGCAAA
CTTTGTTGGTGACAATGGAAAAGTTATTGCCACTGACCCAATGATGGATA
GAATTGAGAGTGCTACGAAAACTCATGATATCAAACATCTTGAGTTTCAC
ACAGCTTATGGTAAAGAAAGCTCAACATATGGGAAAGATTTTGATTTGGC
AATGTCCTCCACTGTATTGCACTGGATACCACCAGAAGAAAAGCTTCCAA
CTTTCCAAAGCATTTTTGACAGCTTGAAACAGGATGGCATGTTTGCTTTC
AACACTGTCAAAAACAATACTTTAAACATTGGCCCAATTGCAGGGAAACT
ACCTAATGTGGATTTTTTGATGAATCATTATCATCCATCAAGCAGAGAAG
AATTGGAAGAGCTTGCAAATAAATCTGGTTTCAATCATGTAGACATAATT
GAAAAGGATATCTGTATAACACTACCCAGTTTAGATTATTATCTTCGCTG
GTTTGCCTGCTCAGTTCATGTTGCAGACTACGACACTGTATTAGCTGATT
TTCGTAAACTCTGTGAGACTGAAGATACATCATGTcttcatgatgaaaat
ggcaagGTTACATACAAACAAACATATTTCTTTGGGTATTGCAAAAGATA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050482-exon-scaffold_173-1491911889:2519..4677 | TCONS_00050482-exon-scaffold_173-1491911889:2519..4677 | Clytia hemisphaerica | exon |
| TCONS_00050482-exon-scaffold_173-1510915933:2519..4677 | TCONS_00050482-exon-scaffold_173-1510915933:2519..4677 | Clytia hemisphaerica | exon |
| TCONS_00050482-exon-scaffold_173-1575043694:2519..4677 | TCONS_00050482-exon-scaffold_173-1575043694:2519..4677 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_173 | supercontig | scaffold_173:2519..4677 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR029063 | SAM-dependent_MTases |
Blast
The following BLAST results are available for this feature:
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