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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050490 ID=TCONS_00050490|Name=TCONS_00050490|organism=Clytia hemisphaerica|type=transcript|length=1474bp
AGAAAGACAATGATGGGCAGACTATTGGTTTTCCAGCATTAAAGGCTGCA
GGTGGTTTTCAACCAATGAAGGTGGAACCAAACTCTAAAACATTGGTTAA
CTTGAATTGTCCTTTAAATGTCCGATCTTTAAAGTTGTATATTGGGCAAG
GGAAAATCTTTCTGAGGCCAATACAGAAATCTCTTTCGGTGATACCATTA
AAGAATGATGAAGNTCTTTAAAGTTGTGTATTGGGCAAGGGAAAATCTTT
TTGAGGCCAATACAGAAATCTCTTTCGGTGATACCATTAAAGAATGATGA
AAAAGTTTCCATTCTGAAAGAGAAATGTTTTGAATGCGGTCAGGAGTTTT
CCCTTCAAGATTTAACATTCCATGTTGAATCTTGTGGCAAAGATATGGAC
ACTGATGAAGAACTTCCTCCTTTTTATCGTGAAGTTGGTTCAGAAGATGA
CAACCGAAATAGAAATGATGAAGAtaaggaaaatgaaaacaatgaaaatg
agaataacgaaaatgaaaacaatgaaaatgagaATAACGGAAATGAAAct
gaggaaaatcaaaatcatgaaTCTACTGTTGGAAACCGAAATGATAGTGC
CTTCAACATTACTGTGGAATATGTTGGTCAAGATGACATCATAAGTCAGG
AACATGACGActttaaaaaaatccaagagGATTTTGACATTATTGAATCT
GTTAACAACATTTTAAATCATGGCTTCGCTAACAATAATAATAGCCCAGT
GGAACTACTAAGAGTGATGCAAGAGCATCTTGTTCTTGGGCGGAGCTTAG
AAGTTCGTGATGTTTCGGTTGCTGAGGAAGGTCCTGTCAACTTTATAATG
GTTGACCGTGCCAATTTACTTGTAACAGGCTTCGATGAAATCAGCCAGCT
TGATTTCAAGTTTATGTGCCTGCGTGTCCAATTTTATTGTGAGAGAGCAG
AGGATTCAGGAGGACCAAGGAAAGATTTCTTCAATCAAATGGTCCGGGAA
ATCAAAGAGGAATTCTTTGATTAGGAAGCATTGCCAATCAACAAATACTA
TAATGCTGGCACAGTTATGGGTTTAAGTATGTTACAGAATGGTCCTTTCC
CTCGTTTTTTGAAAGAAGATGAAATTAAGGAAatattcacaaaagaaaaa
cCAGAACTTAAATACTTGCACATAAGACAAGCATTTAAAGATCTTGGAAT
TTTACAGgTTTTCCAACATTTTCCGATGATGCTTCATCTTTTAAGACCAT
CGCCACAATACAATCTAACATTCCGGAAAGTAGTCGAACTTCTTCAACCT
CTCTGGGAAGAAGAAGGTTCAAATGCAAAAATGCGACAGAAGAAATTGTA
TGCAATTTTCCTCAAATATTTGAGGCTGGTGCATGGTAAgttttctattt
tcaacattactCTTCGCTATGTTGTTAATGTTGAGCAATAAATAATGGAA
TGTGGTCTGTGACTGAAAAATTTN Run BLAST on NCBI protein sequence of TCONS_00050490-protein >TCONS_00050490-protein ID=TCONS_00050490-protein|Name=TCONS_00050490-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MDTDEELPPFYREVGSEDDNRNRNDEDKENENNENENNENENNENENNGN
ETEENQNHESTVGNRNDSAFNITVEYVGQDDIISQEHDDFKKIQEDFDII
ESVNNILNHGFANNNNSPVELLRVMQEHLVLGRSLEVRDVSVAEEGPVNF
IMVDRANLLVTGFDEISQLDFKFMCLRVQFYCERAEDSGGPRKDFFNQMV
REIKEEFFD Run BLAST on NCBI transcript from alignment at scaffold_175:1..11605+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050490 ID=TCONS_00050490|Name=TCONS_00050490|organism=Clytia hemisphaerica|type=transcript|length=11605bp|location=Sequence derived from alignment at scaffold_175:1..11605+ (Clytia hemisphaerica)
AGAAAGACAATGATGGGCAGACTATTGGTTTTCCAGCATTAAAGGCTGCA
GGTGGTTTTCAACCAATGAAGGTGGAACCAAACTCTAAAACATTGGTTAA
CTTGAATTGTCCTTTAAATGTCCGATCTTTAAAGTTGTATATTGGGCAAG
GGAAAATCTTTCTGAGGCCAATACAGAAATCTCTTTCGGTGATACCATTA
AAGAATGATGAAGNTCTTTAAAGTTGTGTATTGGGCAAGGGAAAATCTTT
TTGAGGCCAATACAGAAATCTCTTTCGGTGATACCATTAAAGAATGATGA
AAAAGTTTCCATTCTGAAAGAGAAATGTTTTGAATGCGGTCAGGAGTTTT
CCCTTCAAGATTTAACATTCCATGTTGAATCTTGTGGCAAAGATATGGAC
ACTGATGAAGAACTTCCTCCTTTTTATCGTGAAGTTGGTTCAGAAGATGA
CAACCGAAATAGAAATGATGAAGAtaaggaaaatgaaaacaatgaaaatg
agaataacgaaaatgaaaacaatgaaaatgagaATAACGGAAATGAAAct
gaggaaaatcaaaatcatgaaTCTACTGTTGGAAACCGAAATGATAGTGC
CTTCAACATTACTGTGGAATATGTTGGTCAAGATGACATCATAAGTCAGG
AACATGACGActttaaaaaaatccaagagGATTTTGACATTATTGAATCT
GTTAACAACATTTTAAATCATGGCTTCGCTAACAATAATAATAGCCCAGT
GGAACTACTAAGAGTGATGCAAGAGCATCTTGTTCTTGGGCGGAGCTTAG
AAGTTCGTGATGTTTCGGTTGCTGAGGAAGGTCCTGTCAACTTTATAATG
GTTGACCGTGCCAATTTACTTGTAACAGGCTTCGATGAAATCAGCCAGCT
TGATTTCAAGTTTATGTGCCTGCGTGTCCAATTTTATTGTGAGGTTagta
taatttatgaaaaaatatgccataagtttaatttttgattttcatcccTG
TTATTTAAAGTACATAACATCAATAAATCTACTTGCGAAATGGAAATTGT
TAAAGTGCAGATGTGTTTCTAGTTAATCAAAAACTTGCAAAGCTCCTTTT
TTTGtgagaagaaaaatattatttgataaatttatgGGCTGCAAAAGTTA
ATTTAATTATTGAGATGATTAAATTTTGTGAGTTTGCCTGTTTTTATGGA
ACActgtactttaatgggataaagtTTTGTGGATTTTGGCCCAATCCACA
AAATTATGTCCCCAAGAAAATCCAGAAAGGGGTCATCCACAAAAATCCCa
gcaataaaattaaaaaatgtccGATCTgcgaaattttgagattttctatA
ATTAACGACTTTtcttatccgcaaaatttaatccctggGAAATTTTATAT
AAGTAGGTAAGTGCTGCCATAAGAGCTCATTTTGCGAAGATTTCATTTTG
TGAGAATGgctaaaaattgctaaaaactaattactgTTTAATTATTGTAA
AATTAGACAGTCAGCACTAAAAAAAATTGTGGACTAAGATTTTTGGACTT
CAGCTTCAGGGACGCAAAGAGAACATGTTCTTGATGGTCTCCTAAAGCCT
CACTCTGAGGTCTTTTAGAAGAGACTATTGGGTGGTTATTGCAATTAGAT
ATCCCAAGTAGATCTACATGTTCCTGTTTAGAATATTGACCCTGTTATAC
AGGTTGACTTTTCAAGGTGTCGTTTttaaacataaatattttttgaatac
ttAGAGAGCAGAGGATTCAGGAGGACCAAGGAAAGATTTCTTCAATCAAA
TGGTCCGGGAAATCAAAGAGGAATTCTTTGATTAGGAAGCATTGCCAATC
AACAAATACTATAATGCTGGCACAGTTATGGGTAAGCTCAAATACACTAA
TTACAATAGAGAATATTTCGGCCATAACTTAAGTAAGACTATAGAGGTTC
ATGtattgtttttgtcaatttctaTATTTTGTAATTTGGAAACTTGGAAA
ACTAAGAACATACTGCTCAATAGCCCTAATTATAATCACCTAATTTATAA
CATCTTTATATTTGATTTAGGTTTAAGTATGTTACAGAATGGTCCTTTCC
CTCGTTTTTTGAAAGAAGATGAAATTAAGGAAatattcacaaaagaaaaa
cCAGAACTTAAATACTTGCACATAAGACAAGCATTTAAAGATCTTGGAAT
TTTACAGGTACTTTTTTTCCATATTCTAATTGGTTTATAAAATTGTTGGC
TTTAGGTCTACTTCTCTTTGTTTGCTTTgtgaaaaataatcaaagaatgc
acctcgggtaagttatggcatgtcccaaaaaatgaaaattaccataattt
ttagatcgcattagtcgacagaaaattaCCAAACAAATGaatgaacatga
agggtactatgatgtagtttctaacctgatgtgtaacctaattgtttgtt
cgctgattttcgcgaaaaaccgtaaaaactgattatgacgtcataatcga
tgacgtcataaaaactaaaaattaaatttctcaagaatggtttatccaat
tNtaacctaattgttttttcgctaattttcgcgaaaaaccgcaaaaactg
attattgcgtcataatcgatgacgtcatcaaaactgaaaattgaatttct
caagaatggttcaTCAAATTGTcctcaaattttcaccaaagatgcatctc
aCTAAAgtcaaacatttgaaaaaatatttttttgaaaattctgattAGGT
CAGcaaaaagtagaatttttctttttttactaatttctgctgacgtcatc
aacatttcgaaaatgtttttttctaaaagatcGACTTTggtgagatacat
ctttggtaaaagtttgaagacaattggataaaccattcttgagaaataca
atttttagttttgatgacgtcatcgtcatCCTAAGGTCCTCTccctcaaa
aaaatattttgattttgtttgtttctcCCTAGCAACATTCGAAtgttcaa
aacattcgaataacaCTGCAATGACCTCAGTAACTTTTAGTGTGCACACA
GTTGCATTAAGTGTTgacgaaaaatttaaattgactgttaatatttccct
tttttaaagtcaatgtTTTGTATTGACTGTCAATATAAGTAATGAACagt
caatgtaaaaaattgacTGTTAATATTGACGGTCAATATATTCTattagt
tttcaagaaaattgattgacagtcaatgtaaaatattttttggcaaTAAT
TTGCATTCGACAGTCAATAAAACTTCCTGACAGTCAATAcaaaacattga
acatgggcctaatcaatgttttttgacctagtagggggggcgtacgatct
ggcggtactcgggataaggcctaatttagggccgggaagcagtaaaaacg
ataaaaagtgttggggaaacggtattttgcaagattcacggtgacggtaa
aacacctgattttttgtccgggatgaggtaattgttataaaaaacaacgg
tatttcggtaatagtcatataaaaaaagcttgtcacAGGAGGAGTCggca
aaaaggtaaaaaaaacgcgaaaaactcCCAAAGAAATAAGGATCTTACAC
CATTTCATAAAAAACCCTTATTTGAAACGTTCAAAGTCGAAAAGGTAGTT
GGTATCCACCTCCTGAAGGCAGTTTCAATTTCAACATGCTTTTTCCCATT
CTTCCAAAAATGATGCCCTCGTTTCTATCGATAAAAAAGACGAAAATCGT
TTGCAAACTTGGGCTAATAGTTACACGAGAGCTGTACGTCAGAGAGCTGT
ACGCCAAGAAACGACTATGGCGAAGATGGGAACTTTGCCACATTATCTCT
AGTCAAGCAAGATCGCAAGATCAGCGAAGTCATCGTGTCTACCAAAGAGT
ATGGGACCCCAGATGAAACAAGCACATCTGACAATGGCCAAAACGCCACA
GGCGCATCTGACCAAGATGCAGAAACAATCGAACAACCCGACCAATTTGA
TGCTTcagatgacgatgatgatgatgaagaaaacGTTGAAAGAATAGCTG
AATCCAGAACCCACAACATCGAAAATTCTCTGGATGAAGGATCGTATTTC
CTTCTTGGATGGTCATCTAGGTTTGGTAGAGCAATCAAGATAAACTCGAA
ACTCCTTTCATGAAACTgctattttttgaacatttttaaacatttttaaa
agcgtGCTTTAAGTTTAAAATGACATAACTCAATGAATAAtgattcaaat
tgaaaaaaggaCCTACCAAAGTTTTCGTTAGACCTCCCTACACCACATTA
AcataaaaaagtctttctaTTCTAAACATTTCCACCTTGGCATAATCAAA
CGTACGTCcggacttttttctgggacacccggtgcatttttttctttagg
AAGGTAGAGTTTATCTCTGTAAATTTTCGCAATCGAAACAAAATACCAAA
CTAGTGATCTACTTCATACACATCTTATTCCATTTTgccgaatttttgac
ttttagtcctaagaattttatgggaaaaacagcgggaaccggtattttcg
aaaattttggacgagataacggtaattttcataaaattggttgggatggc
ggtaattcaaaatttcgtacGTCCCCACCTAGAAGTGATCGCTGCACACT
TAATCTTTCATTTGCACATTTCTGCACACTGACTGCACACTTGCTACACA
GTCAATTTTTCCTTAAGGGAAAGTATGTGTATGACCTCGGATTTGTGCAA
GATGATGTAAATCGTAAAGCCATTTTGATTGCAAATAAATACAAACGTCT
TTTCTCACGTTACTCTGTTTGCCACCTGAAAATGAACGGAAAGATGGTGT
TCGATGATAGTATGTCATGCTTTAATATCAACCAACAAAGACGGtaaatt
aaaatgtaaaaaagacatgctgaatggacctacctgatgataaaagctag
ataataaggcaataaggagaaaaatgaaaacaattagtcagacgatatag
cgttttgcgaaaatgcataacacattaaatttcatcattgattgttgatg
ggggaagagggaaggggagtagggaaaatagaaatagaaagttccggttg
caaaaatcagttttattgacaataattgaatcatgcttaatggtggccat
tgttatcaataatgtttttgtgtgaaaaaacaaaaaaaatcactgaGCTT
TTTTATTCGAATGTGGAACCATGGAGCTTCAAATGCTTTCTTGAAGAAGC
AAGTTGTCAAGTGTTTTTCCAGGTTTCCGGACTGTTTTAAGAAGTATGGG
AAAAACGTTGAagaatttttatatattttcaaattgtaaaattgttttgt
tttttttaaattattattatgTCTGAGGAATTAACATCGGAGTTATtcat
tttctacttttcttCTTCCCGTGCGGTCGTCCCgtcgcggcacgccgaac
cgggttctcgTCCAACTTCTGATTCTGTGTTAgacagtcttttttttttt
ttttcaggttttgtgtgatttttttctatttttgtgtgaGATGTTGTTTG
CTAAAATGTTTGTTCACCTATAgtgtatttttctatttttttctatttgg
tggAGTTGCatgaggctttgaggcctattatTGCAACTATAGGCTCTTTC
AATGAGCGcctgtcagcaccttggactgactacccaattccctcATATGG
CATGGGTTCACCTGGGCGAAGGTTAATTCACTTGCCAAGTCAACCACTgc
aagtgggaatcgaacctcagtcgcctgtgcagcaaccaaggtcaatggcC
ACTATACCACAGATAGATTGTATGGAAGTGtgtttgtcaaaaatttttgc
aattcattgtttctccaatattacttttcttctattaTCTTCatatcttc
atttggattaggtttttctttcacctacCACTATTTAAATCCACTtcgac
tttttgctaaatttccctctgtttcggaatgacttttagattaaaaatta
aaaatattctcaacttttttcgttcttatcagtttgagttatttgtaTAT
AAATACTTTTCCTTTTCTTGACAggagatattacatatcttcactatata
taaaagaaatgtaaaaaataaataaataaagtaaataaaCGACAAGTCCA
ATATTATTATTATCCTTTGAAGAACACATATtaaaacaagtgaaaaaagc
taattccattctaaagtctattcacgataagtgtgcactcttttttcttt
tacctataacttttgaagaaattcgtcaatctttataaatttggtatcat
tggaaagatattagtgagtggaacaatttggaataaaaaaatctttaaag
aaattataaaaacgaagatgagaatgaagaagaaaaaaatgaagatcttg
tagagaagtgctataactttcattttcattggagagattgtttgatctta
ggaggtcatcactatgaaaagattttactaaaatatttattcaagataaa
gttatgatacaaagtttatAAGTGATTGagcccaaaaaacagcagaaaac
aggagAAAACAGCGTTTTCAGACGTCAATCAGCTTATAACTTTGTTTGAT
ATCTTTTGACTgaatgattatttttgagaaattttttcacagtgatgacg
ttcgataatcaaggattcacttcagtgaaaatgatagttatagcactttt
cttcaagatcttcatttttttcttcttcattttcatcttcatttttagaa
ttttcttatcaatttttttattccaaatagttccactcactaatatcttt
ccaatgataccaaatttataaagattgaagaattccttcagaagttatag
gtaaatgaaaaaagagtgcacaattatcgtgaatagactttaggagTCAT
CAGAAGAGGTTTCGAAGACCTTAAAACTTTCTTCACTCTGTACACAACCT
TTGTCATCTCGAGTATGCCCAATCTGTATGGTCACCAAAACTACGTAAGG
ACATCAACTTAATTGAGGTCGTTCAACGACGTGCCACTAGGATGGTCAGA
AGGTTAAGTAATCTACCATACGAGCAGGGCCTACGAAAACTTGACTTGCC
TTCTCTCGAATTCAGAAGACACTTCGGAGACATGGTTCAGATCTACAAAC
ACTTGCACTTCTACGATAAGGACACCACAGTTGGAAAGTTTATTCGCAGG
GTGCGTCCATCTCGAACTCACGATTACGAACTGATACTTTGCAGACGATG
GATTTAGAGGTGTCCAGACCAAGTCGTTTTACTATCGATGTGTGACAGCA
TGGAACCAGCTACCAAAAGAGACTGTTAACGCTACTAGCATCAAAGCGTT
CAAAGAAGAACTAACCAAGGCATGGATGGTACATCCATTGCGCTACGAAT
CAAGATCTTTGTAATTGTAGACGATagatcggtttagaggccctcgtgtg
cctggactgtaaatattcacaaaaaaaaatacattttattgcaattttat
ttgtaaataagGAAAACTCCTGACAGCAGATTTATATAGGGGGAAAATTA
TGCTTCAATTGATAAGCAATGATACAAATTTAACCGAATCTGCTGCAAAT
CTTTTCAATTCGTCATATCTACCAAAAGTCCTTTTAAAAATGTCCTTCAG
TTTATGAGGCTGAGCGCCTTGATTTTTCACTCTCTCAATAATACTTTTAG
CGGACTTAATGAATGGTTCAACTATTGAACTTGCGCGGCCTATTCTCAAG
ATTTCTGCTACCAATGGTggaataaaagattttaaaaggtATATTGCTGC
ATTTAAAAGGCATTCTcacaataaaaaaaggaaagctATCACGTTTGTCA
TACAAGGAAtgtaggaaaaaaagttttgcatAGGAgctttttcagtattt
ttgagTCAATCCTGAGTTGTTTTCCCACCCTACAAACTTTAATGCAAAAA
CAGTTTAATATTGAAGAAATTAGAAGGTTTTAATAACCTTTACATGTgac
ttatattttttaaaacaaaggGNCTGAGTTGTTTTCCCACCCTACAAACT
TTAATGCAAAAACAGTTTAATATTGAAGAAATTAGAAGATTTTAATAACC
TTTACTTGTGACTTACATTTTATGAAACAAAGGGACAGTAACTTTCAGCC
AAGCTGCCTGCAGTAGGTCCATTCCTTTGCTTCACGTGGGGTTGAAAGAA
CGTCCAAAAGTACATGGTCTGTTTTCTTCATGACAATTTCATCAGGAACA
agctaaattatttttttaattgcttGAAATTCGAATAAGAGACCATTCTT
CAAAATAGCTAATTTTTCCGTACCTCTTGTATGCCTGCAGAGATTCGCTC
GCACCGGTCTTAGAAACGGACTTTCGACCGCTCCAGACGTCGCTTCGAAG
ACTCAAGAAAGAGCCGCTAAAAGAGCTGCCTCAAGCAGCCCTTTCAAAAT
AATATATGGCCGCTTAAAGACCGGGCTTttgtgtactccaaatcgcttgg
ggagtcacatatatTCTTGTGTTTTCTTTGGAGGACTTTctatcttttaa
ataaaattcgAAATTGAAGTATACTAAAAGCTACGTGGATACAATCATCT
GGTATTTTCAAGTCTTTTGACGAGTCTTTGTTTTtgtcaaataaatattt
ttaggttATTTGACTTTTGAAGCAAAAATGACTCATCTGATGGTTCAAAC
TTCTCATTGATTTGATTTagcttaaaattaaattaaagttCAACTTGTAT
TATTTTTAGTGTAAAGACATATTGAGTGTGAATTACGAGATTGTCTCCAC
TAGGaaaattttcgctaaaatacaAATTCTTGGAAAAGGAACAGAATTCA
CACCTTTTCATTTAAGAACCAGGTGTTCTTGCCAATGTATTCCACTTTCT
CAATTATGAGGAACTTCCTTGATACGGAATATTGATTTTGAAGATAAAGA
ATAAATTCCTTCACATCGTCATTTTTGACTTTGCTCCCGAATATTATTGC
ATAGTCAAAAGCTGATGTTAAGCAATTCTGTAGGTATTGGGCCGTAGTAA
AAGCATTGAAGTCCAAAATAGTCCTGTTGATAATATGAGAAAATGCGTAT
TGTTTGCCCAAATTTTAATagcatatttcttttattccaTTACCTTCTAT
ATAAAGGTATACACTCAAGTTAAAGAATATCTTGGAGTACATGTAAGACC
TCTACTAATTAGTTCAACAAATATcttagctgggagacccgtcttCTCTG
TTcgtgtcattttgaaaaataacattTAGTTAAAACAAATAATAATGTAG
AAATATcagagtagccgggtattttcgtagatgccaaatctggttgcata
attctattggctgttaaacaattgttgaaatcatgTGAtattaatgtttt
gatttgaagtgCGCTATCCTGATTGGCTAACCTTCTCGACAgttttttgg
cacgaaattcaaacaaattcaaactgggtaaAAATACCATACTGTCAATG
AGTAGCTTTTGATGGGATTTTTGattatgtggtgtaagtttgaatagaga
gtatggatctccagactacaAAGATCTTACCTTGTTTCTACTTTCAACTC
TCTATTTTTGCCATTGCACATTAGAACTTATTTTGGCTGGGTTTTTCTGC
ATAGCCAATTATCTTTAAAACTACAGGACAAAACAACTCAAAGCTTTTTT
TCTCGTTTTACTTTATTAgcgttttattattttgaattttgaattcagTG
TTCATTCCTCTTCTCTTATCTAaaagaaattggaaatttttcaGTTGATa
agcttttataaaaatcagggagcaaatgtttttaattaaaaCCAGAGAAA
AACTTAACCAAGGGCTATGAACATATGTTTGATAGGTGGCCTCATGGTTC
ACAGACTTAAACTAAAAATCAttggaaaaaatcatcaaaaaagatattat
atataataataacaacgccattttttaatcataaagaTAGTAAAATTTAT
GAGTTTTAGAGCAAACACAACAATTAGATTAAATCATCTTTGATTAGGAG
TACACTCCTCATGTATAATTTTTaacaatcaaaattgaaatttgatgcTC
ATTGAAAACAAAACGAAAAGGTTCATCCCGTTCTAAACAGTCACTATGTT
TTAAAAGATCGTTCTTCTGCTTTTCCATAATTTCCATATTGTCATAGAAG
TCCATTAAAAAGTTGTAATAGATATGATGTGTTAAATTTTGAATACAGAC
AGATCGAttccttttcttatttttttattattaattatCTGACCTGTGGA
GATATGAAAATTGCCTAAACTAAACACAACAACTGTATCTTGAGTAGTAG
TCGAAATGGTGATCCTGTTTTACCTATTTGGATCACAAGATAAGCCTGAA
TCAAAGTCCCTTAGTCTGATGTCCGAAATAAAGATCTTGTTTTGCCTAGC
ATAGATTTGAGAATAAATGGAGACAAGATAATTGAATGAAGTCGAAATTT
ATTCAAATGAAATGACGTTAAACTTAATGGTTTGCTTTGGGGTAACATTG
GGGATGTGCTGTGCTAATCAAAAAGGAGAACCATAATATCCAGTGCACTG
TATGGGCTAAAGCAGCCACTAGGAAAGTAAGAAGGCCCTAAGGTTACCGA
AGGTAAGCCAACACGCCCAAAGTCACCCCAAAtgcaaaaacaacaacata
gtAACAGCAATATAGTAAAAACAACGGatgaaaggaaaaaaagagagaaa
actaAACACAATTATTGTTGATGGTAAAACATTACCATTTATCTGGGTCC
CAAATAGTAGAGGTAAGTGTTAATGATGCAATGCGGGTTTGAAAATGGTG
TATATCATTGTCTGAAATTCTAAGATAACGTAAATAACAGTCGCTGGTCC
AGCGTCCTAGTGAGCAGATCATTGAGTCAGAAGCACACCGANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCTGCAC
ACTATGCTAACTTGCTGTCTTCTGCTAGTATGGATTGTGCAACCAGATGC
AACTTGTTGTGAGAATTAATGCAGTAAATAGTCTTGGTTCAATTGTCTGT
AATGGTTGATTGTGATTTTGTTGTGATCTgtattttctttaatttgatcA
TTGCAGCTATAATAAGCCCTAATGAGACTTTGACTATATATCTTGTACTA
TATGCCATAAAAATATACTTATTGATTGCATGAAAACTTCTCATATCTCA
TATTTTTCATTCCATTGATtcttccaatcttgttccaggTTTTCCAACAT
TTTCCGATGATGCTTCATCTTTTAAGACCATCGCCACAATACAATCTAAC
ATTCCGGAAAGTAGTCGAACTTCTTCAACCTCTCTGGGAAGAAGAAGGTT
CAAATGCAAAAATGCGACAGAAGAAATTGTATGCAATTTTCCTCAAATAT
TTGAGGCTGGTGCATGGTAAgttttctattttcaacattactCTTCGCTA
TGTTGTTAATGTTGAGCAATAAATAATGGAATGTGGTCTGTGACTGAAAA
ATTTN Coding sequence (CDS) from alignment at scaffold_175:1..11605+ >TCONS_00050490 ID=TCONS_00050490|Name=TCONS_00050490|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at scaffold_175:1..11605+ (Clytia hemisphaerica)
ATGGACACTGATGAAGAACTTCCTCCTTTTTATCGTGAAGTTGGTTCAGA
AGATGACAACCGAAATAGAAATGATGAAGAtaaggaaaatgaaaacaatg
aaaatgagaataacgaaaatgaaaacaatgaaaatgagaATAACGGAAAT
GAAActgaggaaaatcaaaatcatgaaTCTACTGTTGGAAACCGAAATGA
TAGTGCCTTCAACATTACTGTGGAATATGTTGGTCAAGATGACATCATAA
GTCAGGAACATGACGActttaaaaaaatccaagagGATTTTGACATTATT
GAATCTGTTAACAACATTTTAAATCATGGCTTCGCTAACAATAATAATAG
CCCAGTGGAACTACTAAGAGTGATGCAAGAGCATCTTGTTCTTGGGCGGA
GCTTAGAAGTTCGTGATGTTTCGGTTGCTGAGGAAGGTCCTGTCAACTTT
ATAATGGTTGACCGTGCCAATTTACTTGTAACAGGCTTCGATGAAATCAG
CCAGCTTGATTTCAAGTTTATGTGCCTGCGTGTCCAATTTTATTGTGAGA
GAGCAGAGGATTCAGGAGGACCAAGGAAAGATTTCTTCAATCAAATGGTC
CGGGAAATCAAAGAGGAATTCTTTGATTAGATGGACACTGATGAAGAACT
TCCTCCTTTTTATCGTGAAGTTGGTTCAGAAGATGACAACCGAAATAGAA
ATGATGAAGAtaaggaaaatgaaaacaatgaaaatgagaataacgaaaat
gaaaacaatgaaaatgagaATAACGGAAATGAAActgaggaaaatcaaaa
tcatgaaTCTACTGTTGGAAACCGAAATGATAGTGCCTTCAACATTACTG
TGGAATATGTTGGTCAAGATGACATCATAAGTCAGGAACATGACGActtt
aaaaaaatccaagagGATTTTGACATTATTGAATCTGTTAACAACATTTT
AAATCATGGCTTCGCTAACAATAATAATAGCCCAGTGGAACTACTAAGAG
TGATGCAAGAGCATCTTGTTCTTGGGCGGAGCTTAGAAGTTCGTGATGTT
TCGGTTGCTGAGGAAGGTCCTGTCAACTTTATAATGGTTGACCGTGCCAA
TTTACTTGTAACAGGCTTCGATGAAATCAGCCAGCTTGATTTCAAGTTTA
TGTGCCTGCGTGTCCAATTTTATTGTGAGAGAGCAGAGGATTCAGGAGGA
CCAAGGAAAGATTTCTTCAATCAAATGGTCCGGGAAATCAAAGAGGAATT
CTTTGATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050490-exon-scaffold_175-1491911889:1..943 | TCONS_00050490-exon-scaffold_175-1491911889:1..943 | Clytia hemisphaerica | exon |
| TCONS_00050490-exon-scaffold_175-1510915933:1..943 | TCONS_00050490-exon-scaffold_175-1510915933:1..943 | Clytia hemisphaerica | exon |
| TCONS_00050490-exon-scaffold_175-1575043694:1..943 | TCONS_00050490-exon-scaffold_175-1575043694:1..943 | Clytia hemisphaerica | exon |
| TCONS_00050490-exon-scaffold_175-1491911889:1755..1881 | TCONS_00050490-exon-scaffold_175-1491911889:1755..1881 | Clytia hemisphaerica | exon |
| TCONS_00050490-exon-scaffold_175-1510915933:1755..1881 | TCONS_00050490-exon-scaffold_175-1510915933:1755..1881 | Clytia hemisphaerica | exon |
| TCONS_00050490-exon-scaffold_175-1575043694:1755..1881 | TCONS_00050490-exon-scaffold_175-1575043694:1755..1881 | Clytia hemisphaerica | exon |
| TCONS_00050490-exon-scaffold_175-1491911889:2071..2207 | TCONS_00050490-exon-scaffold_175-1491911889:2071..2207 | Clytia hemisphaerica | exon |
| TCONS_00050490-exon-scaffold_175-1510915933:2071..2207 | TCONS_00050490-exon-scaffold_175-1510915933:2071..2207 | Clytia hemisphaerica | exon |
| TCONS_00050490-exon-scaffold_175-1575043694:2071..2207 | TCONS_00050490-exon-scaffold_175-1575043694:2071..2207 | Clytia hemisphaerica | exon |
| TCONS_00050490-exon-scaffold_175-1491911889:11339..11605 | TCONS_00050490-exon-scaffold_175-1491911889:11339..11605 | Clytia hemisphaerica | exon |
| TCONS_00050490-exon-scaffold_175-1510915933:11339..11605 | TCONS_00050490-exon-scaffold_175-1510915933:11339..11605 | Clytia hemisphaerica | exon |
| TCONS_00050490-exon-scaffold_175-1575043694:11339..11605 | TCONS_00050490-exon-scaffold_175-1575043694:11339..11605 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_175 | supercontig | scaffold_175:1..11605 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000569 | HECT_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004842 | ubiquitin-protein transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
The following BLAST results are available for this feature:
|
